AT1G28305

carboxyl

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
9904710 .. 9905516
807 bp
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UTR
Exon/CDS
Intron
AT1G28305.1

Sequence Viewer

Length: 414 bp
ATGAAATATCTGTCAGTGTTTCTATTTTTTTATGGCCTATGCATAATTGGTAATGTATATGGACGAGCAAACAAGCTCCATATCTGGAACGATCTTGATCCCAATCAGAAGCACTCAGACCTCTTTGTGCAGTGTAAATCTGGAAAGGCCGACATGGGAAAACATTATGTCAAGTATGGAAAAATATATCAATTTGATATTAGGGATAATTTTTGGAAGACGACACTTTTTTGGTGTACCTTTAGACATGGGCCTGATTATAGGACTGGCCAACAATTTGATGTGTATGAATATAAACCGGGTGTGGCTCAAGGAGGCACATATGAATGGACAGCTAGAGAAGATGGAATATATTTTAGGTTAAATCAAGGTACGATCCATAAAGTTCATAATTGGAAGCCAATGCCACCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

137

Amino Acids

16.3

Weight (kDa)

9.2

Isoelectric Point (pI)

17.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 26 - 132 2e-26 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 92, 370
AcoI YGGCCR 1 cut(s) 268
AfaI GTAC 2 cut(s) 238, 373
AluBI AGCT 2 cut(s) 76, 335
AluI AGCT 2 cut(s) 76, 335
AlwI GGATC 2 cut(s) 92, 370
AoxI GGCC 4 cut(s) 34, 147, 251, 268
AspS9I GGNCC 1 cut(s) 251
AsuC2I CCSGG 1 cut(s) 300
BalI TGGCCA 1 cut(s) 270
BbsI GAAGAC 1 cut(s) 224
BccI CCATC 1 cut(s) 338
BcnI CCSGG 1 cut(s) 300
BfaI CTAG 1 cut(s) 336
Bme1390I CCNGG 1 cut(s) 300
BmgT120I GGNCC 1 cut(s) 251
BmrFI CCNGG 1 cut(s) 300
BpiI GAAGAC 1 cut(s) 224
BpuEI CTTGAG 1 cut(s) 294
BpuMI CCSGG 1 cut(s) 300
BsaBI GATNNNNATC 2 cut(s) 96, 102
Bse1I ACTGG 1 cut(s) 271
Bse8I GATNNNNATC 2 cut(s) 96, 102
BseJI GATNNNNATC 2 cut(s) 96, 102
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 271
BsgI GTGCAG 1 cut(s) 149
BshFI GGCC 4 cut(s) 36, 149, 253, 270
BsiSI CCGG 1 cut(s) 299
BsnI GGCC 4 cut(s) 36, 149, 253, 270
Bsp143I GATC 3 cut(s) 91, 97, 375
BspANI GGCC 4 cut(s) 36, 149, 253, 270
BspCNI CTCAG 1 cut(s) 128
BspPI GGATC 2 cut(s) 92, 370
BsrI ACTGG 1 cut(s) 271
BssMI GATC 3 cut(s) 91, 97, 375
Bst4CI ACNGT 1 cut(s) 411
BstDEI CTNAG 1 cut(s) 115
BstKTI GATC 3 cut(s) 94, 100, 378
BstMBI GATC 3 cut(s) 91, 97, 375
BstSCI CCNGG 1 cut(s) 298
BstV2I GAAGAC 1 cut(s) 224
BsuRI GGCC 4 cut(s) 36, 149, 253, 270
BtsI GCAGTG 1 cut(s) 137
BtsIMutI CAGTG 2 cut(s) 21, 137
Cfr13I GGNCC 1 cut(s) 251
Csp6I GTAC 2 cut(s) 237, 372
CviAII CATG 2 cut(s) 154, 248
CviJI RGCY 8 cut(s) 36, 76, 149, 253, 270, 308, 335, 400
CviKI_1 RGCY 8 cut(s) 36, 76, 149, 253, 270, 308, 335, 400
CviQI GTAC 2 cut(s) 237, 372
DdeI CTNAG 1 cut(s) 115
DpnI GATC 3 cut(s) 93, 99, 377
DpnII GATC 3 cut(s) 91, 97, 375
EaeI YGGCCR 1 cut(s) 268
EcoT22I ATGCAT 1 cut(s) 44
FaeI CATG 2 cut(s) 157, 251
FatI CATG 2 cut(s) 153, 247
FauNDI CATATG 1 cut(s) 322
FspBI CTAG 1 cut(s) 336
HaeIII GGCC 4 cut(s) 36, 149, 253, 270
HapII CCGG 1 cut(s) 299
Hin1II CATG 2 cut(s) 157, 251
HpaII CCGG 1 cut(s) 299
Hpy166II GTNNAC 1 cut(s) 237
Hpy188I TCNGA 2 cut(s) 108, 118
Hpy188III TCNNGA 3 cut(s) 85, 95, 141
Hpy8I GTNNAC 1 cut(s) 237
HpyCH4III ACNGT 1 cut(s) 411
HpyCH4V TGCA 2 cut(s) 42, 130
HpyF3I CTNAG 1 cut(s) 115
Hsp92II CATG 2 cut(s) 157, 251
Kzo9I GATC 3 cut(s) 91, 97, 375
LmnI GCTCC 1 cut(s) 81
LpnPI CCDG 5 cut(s) 70, 126, 252, 267, 312
MaeI CTAG 1 cut(s) 336
MalI GATC 3 cut(s) 93, 99, 377
MboI GATC 3 cut(s) 91, 97, 375
MboII GAAGA 2 cut(s) 229, 353
MlsI TGGCCA 1 cut(s) 270
MluCI AATT 5 cut(s) 45, 191, 208, 275, 391
MluNI TGGCCA 1 cut(s) 270
MnlI CCTC 2 cut(s) 131, 308
Mox20I TGGCCA 1 cut(s) 270
Mph1103I ATGCAT 1 cut(s) 44
MscI TGGCCA 1 cut(s) 270
MseI TTAA 1 cut(s) 362
MslI CAYNNNNRTG 1 cut(s) 325
Msp20I TGGCCA 1 cut(s) 270
MspI CCGG 1 cut(s) 299
MspR9I CCNGG 1 cut(s) 300
NciI CCSGG 1 cut(s) 300
NdeI CATATG 1 cut(s) 322
NdeII GATC 3 cut(s) 91, 97, 375
NlaIII CATG 2 cut(s) 157, 251
NsiI ATGCAT 1 cut(s) 44
PspPI GGNCC 1 cut(s) 251
RsaI GTAC 2 cut(s) 238, 373
RsaNI GTAC 2 cut(s) 237, 372
RseI CAYNNNNRTG 1 cut(s) 325
SaqAI TTAA 1 cut(s) 362
Sau3AI GATC 3 cut(s) 91, 97, 375
Sau96I GGNCC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 300
SetI ASST 6 cut(s) 78, 123, 242, 337, 362, 373
SmiMI CAYNNNNRTG 1 cut(s) 325
SmlI CTYRAG 1 cut(s) 309
SmoI CTYRAG 1 cut(s) 309
Sse9I AATT 5 cut(s) 45, 191, 208, 275, 391
SspMI CTAG 1 cut(s) 336
StyD4I CCNGG 1 cut(s) 298
TaaI ACNGT 1 cut(s) 411
TasI AATT 5 cut(s) 45, 191, 208, 275, 391
Tru1I TTAA 1 cut(s) 362
Tru9I TTAA 1 cut(s) 362
TscAI CASTG 2 cut(s) 21, 137
TspDTI ATGAA 4 cut(s) 17, 303, 339, 377
TspRI CASTG 2 cut(s) 21, 137
XspI CTAG 1 cut(s) 336
Zsp2I ATGCAT 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.