Rh4AG069800

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000986
Physical Location & Seq
Forward (+)
14504533 .. 14507017
2485 bp
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UTR
Exon/CDS
Intron
Rh4AG069800.1

Sequence Viewer

Length: 402 bp
ATGGAAGAATTCAATCACATTGGCACCATGTCTTTCACCGCCAGTTGCTCTTGTGTGATCATCACCTTGGTCCTAGCAACCCTGACAATAACATATTCTGAAGCGACAGCTGTGAAATGGACTCACTGGCACAACGTTCACGTCGTCAATGGCTTTTCCCGCAACGATGAGCCATTGATTGTTCATTGCAAATCTAAAAACGATGATCTTGGTGACCACACACTATGGATTAATCAAGAGTTTCGCTGGCATTTCGGCCTGAACTTTTGGTTTACGACTCTCTTCTATTGCAATTTCAAATGGGATTCACAAGAGAAACACATCGACGTTTTCAATACTCCTGATGAAAGCCCCCTTGAGTGCATGGAAAATGAGGAAGTAAAACTATACACAAAGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

133

Amino Acids

15.71

Weight (kDa)

5.2

Isoelectric Point (pI)

52.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 45 - 115 1.5e-21 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 23
AciI CCGC 2 cut(s) 39, 160
AclI AACGTT 1 cut(s) 135
AcsI RAATTY 1 cut(s) 8
AcuI CTGAAG 1 cut(s) 120
AgsI TTSAA 3 cut(s) 13, 298, 334
AjiI CACGTC 1 cut(s) 142
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
AoxI GGCC 1 cut(s) 256
ApoI RAATTY 1 cut(s) 8
AseI ATTAAT 1 cut(s) 231
AspS9I GGNCC 1 cut(s) 70
AsuHPI GGTGA 3 cut(s) 28, 55, 224
AvaII GGWCC 1 cut(s) 70
BanI GGYRCC 1 cut(s) 23
BclI TGATCA 1 cut(s) 57
BfaI CTAG 1 cut(s) 74
Bme18I GGWCC 1 cut(s) 70
BmgBI CACGTC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 1 cut(s) 25
BpuEI CTTGAG 1 cut(s) 377
BsaJI CCNNGG 1 cut(s) 66
Bse1I ACTGG 2 cut(s) 42, 131
Bse3DI GCAATG 1 cut(s) 184
BseDI CCNNGG 1 cut(s) 66
BseMI GCAATG 1 cut(s) 184
BseNI ACTGG 2 cut(s) 42, 131
BshFI GGCC 1 cut(s) 258
BshNI GGYRCC 1 cut(s) 23
BsnI GGCC 1 cut(s) 258
Bsp143I GATC 2 cut(s) 57, 205
BspACI CCGC 2 cut(s) 39, 160
BspANI GGCC 1 cut(s) 258
BspLI GGNNCC 1 cut(s) 25
BspT107I GGYRCC 1 cut(s) 23
BsrDI GCAATG 1 cut(s) 184
BsrI ACTGG 2 cut(s) 42, 131
BssECI CCNNGG 1 cut(s) 66
BssMI GATC 2 cut(s) 57, 205
BssT1I CCWWGG 1 cut(s) 66
Bst6I CTCTTC 1 cut(s) 287
BstC8I GCNNGC 1 cut(s) 248
BstEII GGTNACC 1 cut(s) 212
BstKTI GATC 2 cut(s) 60, 208
BstMBI GATC 2 cut(s) 57, 205
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstPI GGTNACC 1 cut(s) 212
BsuRI GGCC 1 cut(s) 258
BtrI CACGTC 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 124
Cac8I GCNNGC 1 cut(s) 248
Cfr13I GGNCC 1 cut(s) 70
CviAII CATG 2 cut(s) 28, 364
CviJI RGCY 5 cut(s) 110, 153, 172, 258, 351
CviKI_1 RGCY 5 cut(s) 110, 153, 172, 258, 351
DpnI GATC 2 cut(s) 59, 207
DpnII GATC 2 cut(s) 57, 205
Eam1104I CTCTTC 1 cut(s) 287
EarI CTCTTC 1 cut(s) 287
Eco130I CCWWGG 1 cut(s) 66
Eco47I GGWCC 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 120
Eco91I GGTNACC 1 cut(s) 212
EcoO65I GGTNACC 1 cut(s) 212
EcoRI GAATTC 1 cut(s) 8
EcoT14I CCWWGG 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 66
FaeI CATG 2 cut(s) 31, 367
FaiI YATR 5 cut(s) 29, 94, 226, 365, 388
FatI CATG 2 cut(s) 27, 363
FauI CCCGC 1 cut(s) 167
FbaI TGATCA 1 cut(s) 57
FspBI CTAG 1 cut(s) 74
HaeIII GGCC 1 cut(s) 258
Hin1II CATG 2 cut(s) 31, 367
HinfI GANTC 3 cut(s) 121, 277, 305
HphI GGTGA 3 cut(s) 28, 55, 224
Hpy166II GTNNAC 2 cut(s) 139, 273
Hpy188I TCNGA 2 cut(s) 100, 401
Hpy188III TCNNGA 2 cut(s) 236, 341
Hpy8I GTNNAC 2 cut(s) 139, 273
Hpy99I CGWCG 2 cut(s) 146, 329
HpyCH4IV ACGT 3 cut(s) 135, 141, 327
HpyCH4V TGCA 3 cut(s) 189, 291, 363
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HpySE526I ACGT 3 cut(s) 135, 141, 327
Hsp92II CATG 2 cut(s) 31, 367
Ksp22I TGATCA 1 cut(s) 57
Kzo9I GATC 2 cut(s) 57, 205
LpnPI CCDG 6 cut(s) 55, 95, 112, 232, 272, 354
MaeI CTAG 1 cut(s) 74
MaeII ACGT 3 cut(s) 135, 141, 327
MaeIII GTNAC 1 cut(s) 212
MalI GATC 2 cut(s) 59, 207
MboI GATC 2 cut(s) 57, 205
MboII GAAGA 2 cut(s) 17, 274
MluCI AATT 2 cut(s) 8, 292
MlyI GAGTC 2 cut(s) 115, 271
MnlI CCTC 1 cut(s) 367
MseI TTAA 1 cut(s) 231
MspA1I CMGCKG 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 159
NdeII GATC 2 cut(s) 57, 205
NlaIII CATG 2 cut(s) 31, 367
NlaIV GGNNCC 1 cut(s) 25
NmuCI GTSAC 1 cut(s) 212
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PfeI GAWTC 1 cut(s) 305
PleI GAGTC 2 cut(s) 115, 271
PpsI GAGTC 2 cut(s) 115, 271
PshBI ATTAAT 1 cut(s) 231
Psp1406I AACGTT 1 cut(s) 135
PspEI GGTNACC 1 cut(s) 212
PspN4I GGNNCC 1 cut(s) 25
PspPI GGNCC 1 cut(s) 70
PvuII CAGCTG 1 cut(s) 110
SaqAI TTAA 1 cut(s) 231
Sau3AI GATC 2 cut(s) 57, 205
Sau96I GGNCC 1 cut(s) 70
SchI GAGTC 2 cut(s) 115, 271
SetI ASST 5 cut(s) 68, 112, 138, 144, 330
SinI GGWCC 1 cut(s) 70
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 2 cut(s) 8, 292
SsiI CCGC 2 cut(s) 39, 160
SspMI CTAG 1 cut(s) 74
StyI CCWWGG 1 cut(s) 66
TaiI ACGT 3 cut(s) 138, 144, 330
TaqI TCGA 1 cut(s) 324
TasI AATT 2 cut(s) 8, 292
TfiI GAWTC 1 cut(s) 305
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 1 cut(s) 131
TseFI GTSAC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 2 cut(s) 173, 360
TspRI CASTG 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 70
VspI ATTAAT 1 cut(s) 231
XapI RAATTY 1 cut(s) 8
XspI CTAG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.