Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003228

Physical Location & Seq

Genomic Coordinates Forward (+)

15897651 .. 15901910

Gene Structure 4260 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g18520.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGTGAGCTTAAGAAGGCGCAGGCTCTTGGGACTATGCTCTGGGAGAAGTTCTTTTCTAACTCCACTTCCTTTGTTTTGTGACAATGCAAAACCTGATAGCGTCCATCCCATGCCTTCGAAAGACAGAAATCTGCCAGATGGGATTACTGGTGCAAAAACAGAACCTTTATCATCTACAGCATATGGTTCTAGCTTGGCAAAAGAGCAACCTCAAAAATACGTTCCAGGGCCACCAATTAAACGCAGAAAACGACATCGCAGAAAGCATATTCATAACCAAGAACCATGTCTAATGAGAGGTGTCTATTTCAAGAATATGAAATGGCAGGCAGCAATTAAGGTTGACAAGAAACAAATTCACTTGGGCACTGTTGGTTCACAAGAAGAGGCTGCTCATTTGTATGATAGGGCTGCTTTCATGTGTGGGAGGGAGCCAAATTTTGAGCTTCCTGAAGAGGAGAAGCAAGAACTGATGAAGTTCAAGTGGGATGAATTCTTGGCGGTGACACGTCACTCCATTAATAACAAAAAGCTCAAGAAGTGGCAGTGGTCTGCCTCAGAAAAGAGGTCTGAGACGCCTCCATTACAAGATGGTGACTGGGATGACAAGCAAGAAGTAAATGTTTTGTCAACTTCGGAAGATGGGGAGGAAGACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

221

Amino Acids

25.38

Weight (kDa)

9.3

Isoelectric Point (pI)

68.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13040 AT4G13040 AT4G13040 AT4G13040 AT4G13040 AT4G13040 AT4G13040 AT4G13040
fragaria_vesca	FvH4_2g18520
malus_domestica	MD05G1171400.v1.1 MD10G1039600.v1.1 MD10G1159600.v1.1
prunus_persica	Prupe.8G198700_v2.0.a1 Prupe.8G198700_v2.0.a1 Prupe.8G198700_v2.0.a1 Prupe.8G198700_v2.0.a1 Prupe.8G198700_v2.0.a1
pyrus_communis	pycom05g15810 pycom10g13780
rosa_chinensis	RchiOBHm_Chr3g0472871 RchiOBHm_Chr6g0284081
rosa_laevigata	RLG00000012771
rosa_multiflora	Rmu_sc0015649.1_g000011
rosa_roxburghii	Rroxscaffold_7G00184950
rosa_rugosa	Rorug04G0064700 Rorug06G0160300 Rorug06G0160400 Rorug06G0160500
rosa_samantha	Rh5BG215100 Rh5BG429800 Rh5CG453400 Rh5DG270800 Rh6AG273300 Rh6BG274000 Rh6CG275400 Rh6DG268400
rosa_wichuraiana	Rw6G023520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	503
AcsI	RAATTY	3 cut(s)	357, 439, 494
AcuI	CTGAAG	1 cut(s)	474
AcyI	GRCGYC	1 cut(s)	578
AflII	CTTAAG	1 cut(s)	10
AflIII	ACRYGT	1 cut(s)	509
AgsI	TTSAA	2 cut(s)	313, 484
AjiI	CACGTC	1 cut(s)	512
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	4 cut(s)	9, 195, 448, 535
AluI	AGCT	4 cut(s)	9, 195, 448, 535
Alw26I	GTCTC	1 cut(s)	569
AoxI	GGCC	1 cut(s)	230
ApeKI	GCWGC	3 cut(s)	332, 392, 413
ApoI	RAATTY	3 cut(s)	357, 439, 494
AseI	ATTAAT	1 cut(s)	522
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	230
AsuHPI	GGTGA	3 cut(s)	16, 517, 608
AsuII	TTCGAA	1 cut(s)	119
BaeGI	GKGCMC	1 cut(s)	371
BbvI	GCAGC	3 cut(s)	344, 379, 400
BccI	CCATC	4 cut(s)	114, 134, 587, 638
BciT130I	CCWGG	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	569
BfaI	CTAG	1 cut(s)	192
BfmI	CTRYAG	1 cut(s)	177
BfrI	CTTAAG	1 cut(s)	10
BisI	GCNGC	3 cut(s)	333, 393, 414
BlsI	GCNGC	3 cut(s)	334, 394, 415
Bme1390I	CCNGG	1 cut(s)	228
BmgBI	CACGTC	1 cut(s)	512
BmgT120I	GGNCC	1 cut(s)	230
BmiI	GGNNCC	1 cut(s)	435
BmrFI	CCNGG	1 cut(s)	228
BmrI	ACTGGG	1 cut(s)	610
BmuI	ACTGGG	1 cut(s)	610
Bpu14I	TTCGAA	1 cut(s)	119
BpuEI	CTTGAG	1 cut(s)	521
BsaHI	GRCGYC	1 cut(s)	578
BsaJI	CCNNGG	1 cut(s)	227
Bse1I	ACTGG	2 cut(s)	154, 605
BseBI	CCWGG	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	227
BseGI	GGATG	3 cut(s)	106, 496, 610
BseMII	CTCAG	2 cut(s)	564, 573
BseNI	ACTGG	2 cut(s)	154, 605
BseRI	GAGGAG	1 cut(s)	473
BseSI	GKGCMC	1 cut(s)	371
BseXI	GCAGC	3 cut(s)	344, 379, 400
BshFI	GGCC	1 cut(s)	232
BslFI	GGGAC	1 cut(s)	45
BsmAI	GTCTC	1 cut(s)	569
BsmBI	CGTCTC	1 cut(s)	569
BsmFI	GGGAC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	232
Bsp119I	TTCGAA	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	371
BspACI	CCGC	1 cut(s)	503
BspANI	GGCC	1 cut(s)	232
BspCNI	CTCAG	2 cut(s)	565, 572
BspLI	GGNNCC	1 cut(s)	435
BspT104I	TTCGAA	1 cut(s)	119
BspTI	CTTAAG	1 cut(s)	10
BsrI	ACTGG	2 cut(s)	154, 605
BssECI	CCNNGG	1 cut(s)	227
BssNI	GRCGYC	1 cut(s)	578
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	373
Bst6I	CTCTTC	2 cut(s)	381, 450
BstACI	GRCGYC	1 cut(s)	578
BstAFI	CTTAAG	1 cut(s)	10
BstBI	TTCGAA	1 cut(s)	119
BstC8I	GCNNGC	2 cut(s)	23, 330
BstDEI	CTNAG	2 cut(s)	559, 573
BstF5I	GGATG	3 cut(s)	106, 496, 610
BstHHI	GCGC	1 cut(s)	21
BstMAI	GTCTC	1 cut(s)	569
BstNI	CCWGG	1 cut(s)	228
BstSCI	CCNGG	1 cut(s)	226
BstSFI	CTRYAG	1 cut(s)	177
BstSLI	GKGCMC	1 cut(s)	371
BstV1I	GCAGC	3 cut(s)	344, 379, 400
BsuRI	GGCC	1 cut(s)	232
BtgZI	GCGATG	1 cut(s)	242
BtrI	CACGTC	1 cut(s)	512
BtsCI	GGATG	3 cut(s)	106, 496, 610
BtsI	GCAGTG	1 cut(s)	554
BtsIMutI	CAGTG	2 cut(s)	369, 554
Cac8I	GCNNGC	2 cut(s)	23, 330
CfoI	GCGC	1 cut(s)	21
Cfr13I	GGNCC	1 cut(s)	230
CseI	GACGC	2 cut(s)	91, 586
CspCI	CAANNNNNGTGG	2 cut(s)	54, 89
CviAII	CATG	3 cut(s)	112, 288, 421
CviJI	RGCY	9 cut(s)	9, 25, 195, 232, 392, 413, 436, 448, 535
CviKI_1	RGCY	9 cut(s)	9, 25, 195, 232, 392, 413, 436, 448, 535
DdeI	CTNAG	2 cut(s)	559, 573
Eam1104I	CTCTTC	2 cut(s)	381, 450
EarI	CTCTTC	2 cut(s)	381, 450
Eco57I	CTGAAG	1 cut(s)	474
EcoRI	GAATTC	1 cut(s)	494
EcoRII	CCWGG	1 cut(s)	226
Esp3I	CGTCTC	1 cut(s)	569
FaeI	CATG	3 cut(s)	115, 291, 424
FaqI	GGGAC	1 cut(s)	45
FatI	CATG	3 cut(s)	111, 287, 420
FauNDI	CATATG	1 cut(s)	184
Fnu4HI	GCNGC	3 cut(s)	333, 393, 414
FokI	GGATG	3 cut(s)	93, 503, 617
Fsp4HI	GCNGC	3 cut(s)	333, 393, 414
FspBI	CTAG	1 cut(s)	192
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	3 cut(s)	333, 393, 414
HaeIII	GGCC	1 cut(s)	232
HgaI	GACGC	2 cut(s)	91, 586
HhaI	GCGC	1 cut(s)	21
Hin1I	GRCGYC	1 cut(s)	578
Hin1II	CATG	3 cut(s)	115, 291, 424
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HincII	GTYRAC	2 cut(s)	346, 633
HindII	GTYRAC	2 cut(s)	346, 633
HphI	GGTGA	3 cut(s)	16, 517, 608
Hpy166II	GTNNAC	3 cut(s)	346, 380, 633
Hpy188I	TCNGA	3 cut(s)	562, 574, 640
Hpy188III	TCNNGA	3 cut(s)	313, 452, 538
Hpy8I	GTNNAC	3 cut(s)	346, 380, 633
HpyAV	CCTTC	2 cut(s)	9, 126
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4IV	ACGT	2 cut(s)	222, 511
HpyCH4V	TGCA	2 cut(s)	89, 155
HpyF3I	CTNAG	2 cut(s)	559, 573
HpySE526I	ACGT	2 cut(s)	222, 511
Hsp92I	GRCGYC	1 cut(s)	578
Hsp92II	CATG	3 cut(s)	115, 291, 424
HspAI	GCGC	1 cut(s)	19
LmnI	GCTCC	1 cut(s)	433
Lsp1109I	GCAGC	3 cut(s)	344, 379, 400
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	2 cut(s)	222, 511
MaeIII	GTNAC	4 cut(s)	80, 505, 512, 596
MboII	GAAGA	3 cut(s)	398, 467, 653
MhlI	GDGCHC	1 cut(s)	371
MluCI	AATT	5 cut(s)	237, 336, 357, 439, 494
MnlI	CCTC	9 cut(s)	222, 293, 382, 423, 451, 561, 568, 591, 643
MseI	TTAA	4 cut(s)	11, 240, 339, 522
MslI	CAYNNNNRTG	1 cut(s)	402
MspCI	CTTAAG	1 cut(s)	10
MspR9I	CCNGG	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	228
NdeI	CATATG	1 cut(s)	184
NlaIII	CATG	3 cut(s)	115, 291, 424
NlaIV	GGNNCC	1 cut(s)	435
NmuCI	GTSAC	4 cut(s)	80, 505, 512, 596
NspV	TTCGAA	1 cut(s)	119
PcsI	WCGNNNNNNNCGW	1 cut(s)	250
PkrI	GCNGC	3 cut(s)	334, 394, 415
PshBI	ATTAAT	1 cut(s)	522
Psp6I	CCWGG	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	1 cut(s)	435
PspPI	GGNCC	1 cut(s)	230
RseI	CAYNNNNRTG	1 cut(s)	402
SaqAI	TTAA	4 cut(s)	11, 240, 339, 522
SatI	GCNGC	3 cut(s)	333, 393, 414
Sau96I	GGNCC	1 cut(s)	230
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	1 cut(s)	371
SfcI	CTRYAG	1 cut(s)	177
SfuI	TTCGAA	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	2 cut(s)	10, 536
SmoI	CTYRAG	2 cut(s)	10, 536
Sse9I	AATT	5 cut(s)	237, 336, 357, 439, 494
SsiI	CCGC	1 cut(s)	503
SspMI	CTAG	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	226
TaaI	ACNGT	1 cut(s)	373
TaiI	ACGT	2 cut(s)	225, 514
TaqI	TCGA	1 cut(s)	119
TasI	AATT	5 cut(s)	237, 336, 357, 439, 494
Tru1I	TTAA	4 cut(s)	11, 240, 339, 522
Tru9I	TTAA	4 cut(s)	11, 240, 339, 522
TscAI	CASTG	2 cut(s)	376, 554
TseFI	GTSAC	4 cut(s)	80, 505, 512, 596
TseI	GCWGC	3 cut(s)	332, 392, 413
Tsp45I	GTSAC	4 cut(s)	80, 505, 512, 596
TspDTI	ATGAA	5 cut(s)	263, 335, 409, 491, 507
TspRI	CASTG	2 cut(s)	376, 554
Vha464I	CTTAAG	1 cut(s)	10
VspI	ATTAAT	1 cut(s)	522
XapI	RAATTY	3 cut(s)	357, 439, 494
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.