Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003228

Physical Location & Seq

Genomic Coordinates Forward (+)

25073875 .. 25077938

Gene Structure 4064 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1159600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGTGAGCTTACGAAGGCGCAGACTACTGGGATTGGGACTATGCTGTGAGATACCTCCTGTTCTAGATCCACTTCCTAGGGTTGCCAACAATGGAACCACACCTCAAAATTTCACCCGAACAAATCCTGTCAGTGTGCATCCCATGCCTTCAAATGATGCAAATCAACCAGATGGGAATACCATTGTGAAAGCAGAACCTCGATCCTTAACTGCATCTGGTTCTATCTTATCCAAAGAGCAGCACGATGTGGCAGTTGCAGGGCCACCAATCAAACGCAGAAAGCGACATCGCAGAAAGCATGCTCAAAACCAGGAACCATGTCTAATGAGAGGTGTCTATTTTAAGAATATGAAGTGGCAGGCAGCAATAAAAGTTGACAAGAAACAAATCCACTTAGGCACTGTTGGTTCCCAAGAAGAGGCTGCTCATTTGTATGACAGGGCTGCTTTCATGTGTGGGAGGGAACCAAATTTCGAGCTTTCTGAGGGGGAGAAGCAAGAACTCAGGAAATTCAAGTGGGATGAATTCTTGGTCATGACTCGTCATGCAATTACTAATAAAAAACACAGGAGAAGGCAAGGGGCAGAGTCAGAGAAGAGGTCCGAGAGTCCTCAACTGGAAGACGGCGACTGGGAGGATGACAAAGAAGAAGTGAATGGCCTTTCAGCTTCAGAAGGTGCAGAGCAAGACATGTTAGACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

236

Amino Acids

26.64

Weight (kDa)

8.87

Isoelectric Point (pI)

60.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13040 AT4G13040 AT4G13040 AT4G13040 AT4G13040 AT4G13040 AT4G13040 AT4G13040
fragaria_vesca	FvH4_2g18520
malus_domestica	MD05G1171400.v1.1 MD10G1039600.v1.1 MD10G1159600.v1.1
prunus_persica	Prupe.8G198700_v2.0.a1 Prupe.8G198700_v2.0.a1 Prupe.8G198700_v2.0.a1 Prupe.8G198700_v2.0.a1 Prupe.8G198700_v2.0.a1
pyrus_communis	pycom05g15810 pycom10g13780
rosa_chinensis	RchiOBHm_Chr3g0472871 RchiOBHm_Chr6g0284081
rosa_laevigata	RLG00000012771
rosa_multiflora	Rmu_sc0015649.1_g000011
rosa_roxburghii	Rroxscaffold_7G00184950
rosa_rugosa	Rorug04G0064700 Rorug06G0160300 Rorug06G0160400 Rorug06G0160500
rosa_samantha	Rh5BG215100 Rh5BG429800 Rh5CG453400 Rh5DG270800 Rh6AG273300 Rh6BG274000 Rh6CG275400 Rh6DG268400
rosa_wichuraiana	Rw6G023520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	62, 198
AcsI	RAATTY	4 cut(s)	109, 472, 512, 527
AcuI	CTGAAG	1 cut(s)	657
AdeI	CACNNNGTG	1 cut(s)	250
AfiI	CCNNNNNNNGG	1 cut(s)	421
AflIII	ACRYGT	1 cut(s)	693
AgsI	TTSAA	2 cut(s)	153, 517
AjnI	CCWGG	1 cut(s)	312
AluBI	AGCT	3 cut(s)	9, 481, 671
AluI	AGCT	3 cut(s)	9, 481, 671
AlwI	GGATC	2 cut(s)	62, 198
AoxI	GGCC	2 cut(s)	263, 661
ApeKI	GCWGC	4 cut(s)	241, 365, 425, 446
ApoI	RAATTY	4 cut(s)	109, 472, 512, 527
AspA2I	CCTAGG	1 cut(s)	77
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	2 cut(s)	263, 603
AsuHPI	GGTGA	2 cut(s)	16, 106
AvaII	GGWCC	1 cut(s)	603
AvrII	CCTAGG	1 cut(s)	77
BbsI	GAAGAC	1 cut(s)	630
BbvI	GCAGC	4 cut(s)	253, 377, 412, 433
BccI	CCATC	1 cut(s)	167
BceAI	ACGGC	1 cut(s)	643
BciT130I	CCWGG	1 cut(s)	314
BfaI	CTAG	2 cut(s)	65, 78
BisI	GCNGC	4 cut(s)	242, 366, 426, 447
BlnI	CCTAGG	1 cut(s)	77
BlsI	GCNGC	4 cut(s)	243, 367, 427, 448
Bme1390I	CCNGG	1 cut(s)	314
Bme18I	GGWCC	1 cut(s)	603
BmgT120I	GGNCC	2 cut(s)	263, 603
BmiI	GGNNCC	4 cut(s)	97, 318, 412, 468
BmrFI	CCNGG	1 cut(s)	314
BmrI	ACTGGG	2 cut(s)	38, 643
BmsI	GCATC	3 cut(s)	148, 148, 224
BmuI	ACTGGG	2 cut(s)	38, 643
BpiI	GAAGAC	1 cut(s)	630
BsaBI	GATNNNNATC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	421
Bse1I	ACTGG	3 cut(s)	33, 624, 638
Bse8I	GATNNNNATC	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	314
BseDI	CCNNGG	1 cut(s)	77
BseGI	GGATG	3 cut(s)	139, 529, 646
BseJI	GATNNNNATC	1 cut(s)	162
BseLI	CCNNNNNNNGG	1 cut(s)	421
BseMII	CTCAG	2 cut(s)	477, 520
BseNI	ACTGG	3 cut(s)	33, 624, 638
BseXI	GCAGC	4 cut(s)	253, 377, 412, 433
BsgI	GTGCAG	1 cut(s)	702
BshFI	GGCC	2 cut(s)	265, 663
BslFI	GGGAC	1 cut(s)	51
BslI	CCNNNNNNNGG	1 cut(s)	421
BsmFI	GGGAC	1 cut(s)	51
BsnI	GGCC	2 cut(s)	265, 663
Bsp143I	GATC	2 cut(s)	67, 203
BspANI	GGCC	2 cut(s)	265, 663
BspCNI	CTCAG	2 cut(s)	478, 519
BspHI	TCATGA	1 cut(s)	537
BspLI	GGNNCC	4 cut(s)	97, 318, 412, 468
BspPI	GGATC	2 cut(s)	62, 198
BsrI	ACTGG	3 cut(s)	33, 624, 638
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	2 cut(s)	67, 203
BssT1I	CCWWGG	1 cut(s)	77
Bst2UI	CCWGG	1 cut(s)	314
Bst4CI	ACNGT	1 cut(s)	406
Bst6I	CTCTTC	2 cut(s)	414, 593
BstAPI	GCANNNNNTGC	1 cut(s)	145
BstC8I	GCNNGC	2 cut(s)	303, 363
BstDEI	CTNAG	3 cut(s)	397, 486, 506
BstF5I	GGATG	3 cut(s)	139, 529, 646
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	2 cut(s)	70, 206
BstMBI	GATC	2 cut(s)	67, 203
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstNI	CCWGG	1 cut(s)	314
BstNSI	RCATGY	2 cut(s)	305, 697
BstSCI	CCNGG	1 cut(s)	312
BstV1I	GCAGC	4 cut(s)	253, 377, 412, 433
BstV2I	GAAGAC	1 cut(s)	630
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BsuRI	GGCC	2 cut(s)	265, 663
BtgZI	GCGATG	1 cut(s)	275
BtsCI	GGATG	3 cut(s)	139, 529, 646
BtsIMutI	CAGTG	2 cut(s)	139, 402
Cac8I	GCNNGC	2 cut(s)	303, 363
CciI	TCATGA	1 cut(s)	537
CfoI	GCGC	1 cut(s)	21
Cfr13I	GGNCC	2 cut(s)	263, 603
CviAII	CATG	7 cut(s)	145, 302, 321, 454, 538, 548, 694
CviJI	RGCY	7 cut(s)	9, 265, 425, 446, 481, 663, 671
CviKI_1	RGCY	7 cut(s)	9, 265, 425, 446, 481, 663, 671
DdeI	CTNAG	3 cut(s)	397, 486, 506
DpnI	GATC	2 cut(s)	69, 205
DpnII	GATC	2 cut(s)	67, 203
DraIII	CACNNNGTG	1 cut(s)	250
Eam1104I	CTCTTC	2 cut(s)	414, 593
EarI	CTCTTC	2 cut(s)	414, 593
Eco130I	CCWWGG	1 cut(s)	77
Eco47I	GGWCC	1 cut(s)	603
Eco57I	CTGAAG	1 cut(s)	657
EcoRI	GAATTC	1 cut(s)	527
EcoRII	CCWGG	1 cut(s)	312
EcoT14I	CCWWGG	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	77
FaeI	CATG	7 cut(s)	148, 305, 324, 457, 541, 551, 697
FaqI	GGGAC	1 cut(s)	51
FatI	CATG	7 cut(s)	144, 301, 320, 453, 537, 547, 693
Fnu4HI	GCNGC	4 cut(s)	242, 366, 426, 447
FokI	GGATG	3 cut(s)	126, 536, 653
Fsp4HI	GCNGC	4 cut(s)	242, 366, 426, 447
FspBI	CTAG	2 cut(s)	65, 78
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	4 cut(s)	242, 366, 426, 447
HaeIII	GGCC	2 cut(s)	265, 663
HhaI	GCGC	1 cut(s)	21
Hin1II	CATG	7 cut(s)	148, 305, 324, 457, 541, 551, 697
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HinfI	GANTC	4 cut(s)	541, 590, 610, 701
HphI	GGTGA	2 cut(s)	16, 106
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	4 cut(s)	487, 595, 607, 676
Hpy188III	TCNNGA	4 cut(s)	65, 508, 538, 705
Hpy8I	GTNNAC	1 cut(s)	379
HpyAV	CCTTC	4 cut(s)	9, 159, 570, 671
HpyCH4III	ACNGT	1 cut(s)	406
HpyCH4V	TGCA	6 cut(s)	139, 161, 215, 260, 551, 683
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
HpyF3I	CTNAG	3 cut(s)	397, 486, 506
Hsp92II	CATG	7 cut(s)	148, 305, 324, 457, 541, 551, 697
HspAI	GCGC	1 cut(s)	19
Kzo9I	GATC	2 cut(s)	67, 203
Lsp1109I	GCAGC	4 cut(s)	253, 377, 412, 433
LweI	GCATC	3 cut(s)	148, 148, 224
MaeI	CTAG	2 cut(s)	65, 78
MalI	GATC	2 cut(s)	69, 205
MboI	GATC	2 cut(s)	67, 203
MboII	GAAGA	4 cut(s)	431, 610, 635, 662
MflI	RGATCY	1 cut(s)	67
MluCI	AATT	5 cut(s)	109, 472, 512, 527, 552
MlyI	GAGTC	4 cut(s)	535, 599, 619, 695
MseI	TTAA	2 cut(s)	209, 345
MslI	CAYNNNNRTG	1 cut(s)	435
MspR9I	CCNGG	1 cut(s)	314
MvaI	CCWGG	1 cut(s)	314
MwoI	GCNNNNNNNGC	1 cut(s)	145
NdeII	GATC	2 cut(s)	67, 203
NlaIII	CATG	7 cut(s)	148, 305, 324, 457, 541, 551, 697
NlaIV	GGNNCC	4 cut(s)	97, 318, 412, 468
NspI	RCATGY	2 cut(s)	305, 697
PaeI	GCATGC	1 cut(s)	305
PagI	TCATGA	1 cut(s)	537
PciI	ACATGT	1 cut(s)	693
PcsI	WCGNNNNNNNCGW	1 cut(s)	283
PkrI	GCNGC	4 cut(s)	243, 367, 427, 448
PleI	GAGTC	4 cut(s)	535, 598, 618, 695
PpsI	GAGTC	4 cut(s)	535, 598, 618, 695
PscI	ACATGT	1 cut(s)	693
Psp6I	CCWGG	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	4 cut(s)	97, 318, 412, 468
PspPI	GGNCC	2 cut(s)	263, 603
PsuI	RGATCY	1 cut(s)	67
RseI	CAYNNNNRTG	1 cut(s)	435
SaqAI	TTAA	2 cut(s)	209, 345
SatI	GCNGC	4 cut(s)	242, 366, 426, 447
Sau3AI	GATC	2 cut(s)	67, 203
Sau96I	GGNCC	2 cut(s)	263, 603
SchI	GAGTC	4 cut(s)	535, 599, 619, 695
ScrFI	CCNGG	1 cut(s)	314
SetI	ASST	9 cut(s)	11, 58, 106, 202, 337, 483, 605, 673, 682
SfaNI	GCATC	3 cut(s)	148, 148, 224
SinI	GGWCC	1 cut(s)	603
SmiMI	CAYNNNNRTG	1 cut(s)	435
SphI	GCATGC	1 cut(s)	305
Sse9I	AATT	5 cut(s)	109, 472, 512, 527, 552
SspMI	CTAG	2 cut(s)	65, 78
StyD4I	CCNGG	1 cut(s)	312
StyI	CCWWGG	1 cut(s)	77
TaaI	ACNGT	1 cut(s)	406
TaqI	TCGA	2 cut(s)	202, 477
TasI	AATT	5 cut(s)	109, 472, 512, 527, 552
Tru1I	TTAA	2 cut(s)	209, 345
Tru9I	TTAA	2 cut(s)	209, 345
TscAI	CASTG	2 cut(s)	139, 409
TseI	GCWGC	4 cut(s)	241, 365, 425, 446
TspDTI	ATGAA	3 cut(s)	368, 442, 540
TspRI	CASTG	2 cut(s)	139, 409
VpaK11BI	GGWCC	1 cut(s)	603
XapI	RAATTY	4 cut(s)	109, 472, 512, 527
XbaI	TCTAGA	1 cut(s)	64
XceI	RCATGY	2 cut(s)	305, 697
XmaJI	CCTAGG	1 cut(s)	77
XspI	CTAG	2 cut(s)	65, 78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.