Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008711

Physical Location & Seq

Genomic Coordinates Reverse (-)

7657094 .. 7658302

Gene Structure 1209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G13180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGAGAATAATCCAAGAAGCTCATCGTCTCTCCCTCTAGCCGGGCGTGTAGCTATAGTGACCGGAGCCACCAGAGGCATGGGCCGTGAAATCGCGATTCACCTCCACTCTCTTGGTGCAAGAGTCACCATCAATTATGTCTCGAGCTCATCAAAAGCTGAACTCTTGGTTTCAGAACTAAACGACTCATCTCAATTAAAGTCAGCGATCGCAGTTAAAGCAGATGTGTCAGACCCGGACCAGATCAACAACTTGTTTGATCAAACAGAACAAGAGTTCGGATCTAAAGTTCACATCGTCGTGAATTGTGCAGGTGTTTTGGATCCAAAGTATCCATCTTTATCCGAGACGACACTAGAAGATTTCGATAACACATTCACAATAAACACAAGAGGGTCTTTCTTGTGTTGCAAGGAAGCAGCTAAAAGGGTTATGAGAGGAGGTGGTGGAAGAATCATTATGATGTCTACATCAATGGTTGGTGGTCTCGCCCCGGGTTATGGAGTTTACGCAGCATCAAAGGCCGCCGTTGAGACAATGGTGAAAGTGTTGGCGAAGGAGCTTAAGGGAAGCCGGATAACCGCGAATTGCGTGGCGCCAGGGCCGGTTGCGACGGAGATGTTTTATGCTGGAAAGAGTGATGAAACGGTGAAAATGCTTGCAGGGGCTTGTCCTATGGGGAGGATCGGTGAGTCAAAGGATATAACCGAGATTGTAGGGTTTTTGGCCGGTGATGGTGGTGAATGGATTAACGGTCAAGTTATTAGAGCCAATGGAGGCTTTGTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004033 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008106 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0016491 GO:0016614 GO:0016616 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00061 ko00333 ko00780 ko01040 ko01100 ko01130 ko01212 map00061 map00333 map00780 map01040 map01100 map01130 map01212

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

263

Amino Acids

27.66

Weight (kDa)

6.33

Isoelectric Point (pI)

33.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDR	PF23441	14 - 261	6.6e-09	SDR-like rossmann domain
adh_short	PF00106	16 - 210	7.9e-46	short chain dehydrogenase
KR	PF08659	19 - 185	1.3e-12	KR domain
adh_short_C2	PF13561	22 - 261	2.4e-56	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13180
fragaria_vesca	FvH4_4g13260
malus_domestica	MD03G1214200.v1.1 MD10G1132600.v1.1 MD14G1002100.v1.1
prunus_persica	Prupe.8G053700_v2.0.a1 Prupe.8G053800_v2.0.a1
pyrus_communis	pycom03g16290 pycom10g11380 pycom49g00170
rosa_chinensis	RchiOBHm_Chr3g0497441
rosa_laevigata	RLG00000022461 RLG00000022463
rosa_multiflora	Rmu_co8233681.1_g000001 Rmu_sc0008086.1_g000011
rosa_roxburghii	Rroxscaffold_166G00440680 Rroxscaffold_6G00388040
rosa_rugosa	Rorug03G0293000
rosa_samantha	Rh3AG336600 Rh3BG374900 Rh3CG370800 Rh3DG371700
rosa_wichuraiana	Rw3G029590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	302
Acc36I	ACCTGC	1 cut(s)	302
AccB1I	GGYRCC	1 cut(s)	595
AccI	GTMKAC	1 cut(s)	467
AccII	CGCG	2 cut(s)	95, 584
AciI	CCGC	2 cut(s)	525, 582
AclWI	GGATC	4 cut(s)	289, 317, 330, 692
AcoI	YGGCCR	1 cut(s)	726
AcyI	GRCGYC	1 cut(s)	596
AfiI	CCNNNNNNNGG	2 cut(s)	41, 500
AflII	CTTAAG	1 cut(s)	563
AjnI	CCWGG	1 cut(s)	598
AloI	GAACNNNNNNTCC	2 cut(s)	273, 305
AluBI	AGCT	6 cut(s)	21, 53, 147, 158, 422, 562
AluI	AGCT	6 cut(s)	21, 53, 147, 158, 422, 562
Alw21I	GWGCWC	1 cut(s)	149
Alw26I	GTCTC	5 cut(s)	33, 145, 341, 491, 527
AlwI	GGATC	4 cut(s)	289, 317, 330, 692
Ama87I	CYCGRG	2 cut(s)	142, 493
AoxI	GGCC	4 cut(s)	82, 522, 602, 726
ApeKI	GCWGC	2 cut(s)	419, 512
AsiSI	GCGATCGC	1 cut(s)	210
AspLEI	GCGC	1 cut(s)	598
AspS9I	GGNCC	3 cut(s)	82, 238, 602
AsuC2I	CCSGG	4 cut(s)	43, 236, 494, 495
AsuHPI	GGTGA	7 cut(s)	92, 118, 553, 661, 701, 743, 752
AvaI	CYCGRG	2 cut(s)	142, 493
AvaII	GGWCC	1 cut(s)	238
BamHI	GGATCC	1 cut(s)	322
BanI	GGYRCC	1 cut(s)	595
BanII	GRGCYC	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	149
BbvI	GCAGC	2 cut(s)	431, 524
BccI	CCATC	3 cut(s)	137, 343, 728
BceAI	ACGGC	2 cut(s)	69, 512
BciT130I	CCWGG	1 cut(s)	600
BciVI	GTATCC	1 cut(s)	342
BclI	TGATCA	1 cut(s)	259
BcnI	CCSGG	4 cut(s)	43, 236, 494, 495
BcoDI	GTCTC	5 cut(s)	33, 145, 341, 491, 527
BfaI	CTAG	2 cut(s)	38, 356
BfmI	CTRYAG	1 cut(s)	54
BfoI	RGCGCY	1 cut(s)	599
BfrI	CTTAAG	1 cut(s)	563
BfuAI	ACCTGC	1 cut(s)	302
BfuI	GTATCC	1 cut(s)	342
BisI	GCNGC	3 cut(s)	420, 513, 525
BlsI	GCNGC	3 cut(s)	421, 514, 526
Bme1390I	CCNGG	5 cut(s)	43, 236, 494, 495, 600
Bme18I	GGWCC	1 cut(s)	238
BmeT110I	CYCGRG	2 cut(s)	142, 493
BmgT120I	GGNCC	3 cut(s)	82, 238, 602
BmiI	GGNNCC	3 cut(s)	67, 324, 597
BmrFI	CCNGG	5 cut(s)	43, 236, 494, 495, 600
BmsI	GCATC	1 cut(s)	524
BpuMI	CCSGG	4 cut(s)	43, 236, 494, 495
BsaHI	GRCGYC	1 cut(s)	596
BsaI	GGTCTC	1 cut(s)	491
BsaJI	CCNNGG	3 cut(s)	492, 493, 599
BsaWI	WCCGGW	1 cut(s)	62
BsaXI	ACNNNNNCTCC	3 cut(s)	673, 703, 768
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 500
Bse118I	RCCGGY	2 cut(s)	604, 728
BseBI	CCWGG	1 cut(s)	600
BseDI	CCNNGG	3 cut(s)	492, 493, 599
BseLI	CCNNNNNNNGG	2 cut(s)	41, 500
BseRI	GAGGAG	1 cut(s)	453
BseXI	GCAGC	2 cut(s)	431, 524
BsgI	GTGCAG	1 cut(s)	330
Bsh1236I	CGCG	2 cut(s)	95, 584
Bsh1285I	CGRYCG	1 cut(s)	210
BshFI	GGCC	4 cut(s)	84, 524, 604, 728
BshNI	GGYRCC	1 cut(s)	595
BsiEI	CGRYCG	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	149
BsiHKCI	CYCGRG	2 cut(s)	142, 493
BsiSI	CCGG	7 cut(s)	42, 63, 236, 494, 574, 605, 729
BslI	CCNNNNNNNGG	2 cut(s)	41, 500
BsmAI	GTCTC	5 cut(s)	33, 145, 341, 491, 527
BsmBI	CGTCTC	2 cut(s)	33, 341
BsnI	GGCC	4 cut(s)	84, 524, 604, 728
Bso31I	GGTCTC	1 cut(s)	491
BsoBI	CYCGRG	2 cut(s)	142, 493
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp143I	GATC	6 cut(s)	207, 243, 259, 281, 322, 684
Bsp68I	TCGCGA	1 cut(s)	95
BspACI	CCGC	2 cut(s)	525, 582
BspANI	GGCC	4 cut(s)	84, 524, 604, 728
BspFNI	CGCG	2 cut(s)	95, 584
BspLI	GGNNCC	3 cut(s)	67, 324, 597
BspMI	ACCTGC	1 cut(s)	302
BspPI	GGATC	4 cut(s)	289, 317, 330, 692
BspT107I	GGYRCC	1 cut(s)	595
BspTI	CTTAAG	1 cut(s)	563
BspTNI	GGTCTC	1 cut(s)	491
BsrFI	RCCGGY	2 cut(s)	604, 728
BssAI	RCCGGY	2 cut(s)	604, 728
BssECI	CCNNGG	3 cut(s)	492, 493, 599
BssMI	GATC	6 cut(s)	207, 243, 259, 281, 322, 684
BssNI	GRCGYC	1 cut(s)	596
Bst2UI	CCWGG	1 cut(s)	600
Bst4CI	ACNGT	2 cut(s)	649, 755
BstACI	GRCGYC	1 cut(s)	596
BstAFI	CTTAAG	1 cut(s)	563
BstC8I	GCNNGC	1 cut(s)	660
BstFNI	CGCG	2 cut(s)	95, 584
BstH2I	RGCGCY	1 cut(s)	599
BstHHI	GCGC	1 cut(s)	598
BstKTI	GATC	6 cut(s)	210, 246, 262, 284, 325, 687
BstMAI	GTCTC	5 cut(s)	33, 145, 341, 491, 527
BstMBI	GATC	6 cut(s)	207, 243, 259, 281, 322, 684
BstMCI	CGRYCG	1 cut(s)	210
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 521
BstNI	CCWGG	1 cut(s)	600
BstSCI	CCNGG	5 cut(s)	41, 234, 492, 493, 598
BstSFI	CTRYAG	1 cut(s)	54
BstUI	CGCG	2 cut(s)	95, 584
BstV1I	GCAGC	2 cut(s)	431, 524
BstX2I	RGATCY	2 cut(s)	281, 322
BstXI	CCANNNNNNTGG	2 cut(s)	79, 113
BstYI	RGATCY	2 cut(s)	281, 322
BsuI	GTATCC	1 cut(s)	342
BsuRI	GGCC	4 cut(s)	84, 524, 604, 728
BtuMI	TCGCGA	1 cut(s)	95
BveI	ACCTGC	1 cut(s)	302
Cac8I	GCNNGC	1 cut(s)	660
CfoI	GCGC	1 cut(s)	598
Cfr10I	RCCGGY	2 cut(s)	604, 728
Cfr13I	GGNCC	3 cut(s)	82, 238, 602
Cfr9I	CCCGGG	1 cut(s)	493
CviAII	CATG	1 cut(s)	79
DinI	GGCGCC	1 cut(s)	597
DpnI	GATC	6 cut(s)	209, 245, 261, 283, 324, 686
DpnII	GATC	6 cut(s)	207, 243, 259, 281, 322, 684
EaeI	YGGCCR	1 cut(s)	726
Ecl136II	GAGCTC	1 cut(s)	147
Eco24I	GRGCYC	1 cut(s)	149
Eco31I	GGTCTC	1 cut(s)	491
Eco47I	GGWCC	1 cut(s)	238
Eco53kI	GAGCTC	1 cut(s)	147
Eco88I	CYCGRG	2 cut(s)	142, 493
EcoICRI	GAGCTC	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	598
EcoT38I	GRGCYC	1 cut(s)	149
EgeI	GGCGCC	1 cut(s)	597
EheI	GGCGCC	1 cut(s)	597
Esp3I	CGTCTC	2 cut(s)	33, 341
FaeI	CATG	1 cut(s)	82
FaiI	YATR	9 cut(s)	56, 80, 138, 434, 461, 501, 627, 677, 704
FalI	AAGNNNNNCTT	2 cut(s)	382, 414
FatI	CATG	1 cut(s)	78
FbaI	TGATCA	1 cut(s)	259
FblI	GTMKAC	1 cut(s)	467
Fnu4HI	GCNGC	3 cut(s)	420, 513, 525
FriOI	GRGCYC	1 cut(s)	149
Fsp4HI	GCNGC	3 cut(s)	420, 513, 525
FspBI	CTAG	2 cut(s)	38, 356
GlaI	GCGC	1 cut(s)	597
GluI	GCNGC	3 cut(s)	420, 513, 525
HaeII	RGCGCY	1 cut(s)	599
HaeIII	GGCC	4 cut(s)	84, 524, 604, 728
HapII	CCGG	7 cut(s)	42, 63, 236, 494, 574, 605, 729
HhaI	GCGC	1 cut(s)	598
Hin1I	GRCGYC	1 cut(s)	596
Hin1II	CATG	1 cut(s)	82
Hin6I	GCGC	1 cut(s)	596
HinP1I	GCGC	1 cut(s)	596
HinfI	GANTC	5 cut(s)	97, 123, 185, 453, 692
HpaII	CCGG	7 cut(s)	42, 63, 236, 494, 574, 605, 729
HphI	GGTGA	7 cut(s)	92, 118, 553, 661, 701, 743, 752
Hpy166II	GTNNAC	3 cut(s)	292, 468, 508
Hpy188I	TCNGA	4 cut(s)	175, 232, 281, 346
Hpy188III	TCNNGA	3 cut(s)	94, 142, 301
Hpy8I	GTNNAC	3 cut(s)	292, 468, 508
Hpy99I	CGWCG	2 cut(s)	302, 616
HpyAV	CCTTC	1 cut(s)	550
HpyCH4III	ACNGT	2 cut(s)	649, 755
HpyCH4V	TGCA	4 cut(s)	119, 311, 411, 662
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 521
Hsp92I	GRCGYC	1 cut(s)	596
Hsp92II	CATG	1 cut(s)	82
HspAI	GCGC	1 cut(s)	596
KasI	GGCGCC	1 cut(s)	595
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	6 cut(s)	207, 243, 259, 281, 322, 684
LmnI	GCTCC	2 cut(s)	65, 559
Lsp1109I	GCAGC	2 cut(s)	431, 524
LweI	GCATC	1 cut(s)	524
MaeI	CTAG	2 cut(s)	38, 356
MaeIII	GTNAC	2 cut(s)	58, 124
MalI	GATC	6 cut(s)	209, 245, 261, 283, 324, 686
MboI	GATC	6 cut(s)	207, 243, 259, 281, 322, 684
MboII	GAAGA	2 cut(s)	371, 462
MflI	RGATCY	2 cut(s)	281, 322
MhlI	GDGCHC	1 cut(s)	149
MluCI	AATT	4 cut(s)	133, 194, 304, 586
Mly113I	GGCGCC	1 cut(s)	596
MlyI	GAGTC	3 cut(s)	132, 179, 701
MnlI	CCTC	8 cut(s)	45, 68, 113, 386, 431, 434, 675, 770
MseI	TTAA	4 cut(s)	197, 216, 564, 750
MslI	CAYNNNNRTG	2 cut(s)	299, 461
MspCI	CTTAAG	1 cut(s)	563
MspI	CCGG	7 cut(s)	42, 63, 236, 494, 574, 605, 729
MspR9I	CCNGG	5 cut(s)	43, 236, 494, 495, 600
MvaI	CCWGG	1 cut(s)	600
MvnI	CGCG	2 cut(s)	95, 584
MwoI	GCNNNNNNNGC	2 cut(s)	218, 521
NarI	GGCGCC	1 cut(s)	596
NciI	CCSGG	4 cut(s)	43, 236, 494, 495
NdeII	GATC	6 cut(s)	207, 243, 259, 281, 322, 684
NlaIII	CATG	1 cut(s)	82
NlaIV	GGNNCC	3 cut(s)	67, 324, 597
NmuCI	GTSAC	2 cut(s)	58, 124
NruI	TCGCGA	1 cut(s)	95
PaeR7I	CTCGAG	1 cut(s)	142
PaqCI	CACCTGC	1 cut(s)	302
PfeI	GAWTC	2 cut(s)	97, 453
PkrI	GCNGC	3 cut(s)	421, 514, 526
Ple19I	CGATCG	1 cut(s)	210
PleI	GAGTC	3 cut(s)	131, 179, 700
PluTI	GGCGCC	1 cut(s)	599
PpsI	GAGTC	3 cut(s)	131, 179, 700
Psp124BI	GAGCTC	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	598
PspGI	CCWGG	1 cut(s)	598
PspN4I	GGNNCC	3 cut(s)	67, 324, 597
PspPI	GGNCC	3 cut(s)	82, 238, 602
PsuI	RGATCY	2 cut(s)	281, 322
PvuI	CGATCG	1 cut(s)	210
RgaI	GCGATCGC	1 cut(s)	210
RruI	TCGCGA	1 cut(s)	95
RseI	CAYNNNNRTG	2 cut(s)	299, 461
SacI	GAGCTC	1 cut(s)	149
SaqAI	TTAA	4 cut(s)	197, 216, 564, 750
SatI	GCNGC	3 cut(s)	420, 513, 525
Sau3AI	GATC	6 cut(s)	207, 243, 259, 281, 322, 684
Sau96I	GGNCC	3 cut(s)	82, 238, 602
SchI	GAGTC	3 cut(s)	132, 179, 701
ScrFI	CCNGG	5 cut(s)	43, 236, 494, 495, 600
SduI	GDGCHC	1 cut(s)	149
SetI	ASST	9 cut(s)	23, 55, 105, 149, 160, 316, 424, 445, 564
SfaAI	GCGATCGC	1 cut(s)	210
SfaNI	GCATC	1 cut(s)	524
SfcI	CTRYAG	1 cut(s)	54
SfoI	GGCGCC	1 cut(s)	597
Sfr274I	CTCGAG	1 cut(s)	142
SgfI	GCGATCGC	1 cut(s)	210
SinI	GGWCC	1 cut(s)	238
SlaI	CTCGAG	1 cut(s)	142
SmaI	CCCGGG	1 cut(s)	495
SmiMI	CAYNNNNRTG	2 cut(s)	299, 461
SmlI	CTYRAG	2 cut(s)	142, 563
SmoI	CTYRAG	2 cut(s)	142, 563
Sse9I	AATT	4 cut(s)	133, 194, 304, 586
SsiI	CCGC	2 cut(s)	525, 582
SspDI	GGCGCC	1 cut(s)	595
SspMI	CTAG	2 cut(s)	38, 356
SstI	GAGCTC	1 cut(s)	149
StyD4I	CCNGG	5 cut(s)	41, 234, 492, 493, 598
TaaI	ACNGT	2 cut(s)	649, 755
TaqI	TCGA	2 cut(s)	143, 366
TasI	AATT	4 cut(s)	133, 194, 304, 586
TauI	GCSGC	1 cut(s)	527
TfiI	GAWTC	2 cut(s)	97, 453
Tru1I	TTAA	4 cut(s)	197, 216, 564, 750
Tru9I	TTAA	4 cut(s)	197, 216, 564, 750
TseFI	GTSAC	2 cut(s)	58, 124
TseI	GCWGC	2 cut(s)	419, 512
Tsp45I	GTSAC	2 cut(s)	58, 124
TspDTI	ATGAA	1 cut(s)	657
TspGWI	ACGGA	1 cut(s)	629
TspMI	CCCGGG	1 cut(s)	493
Vha464I	CTTAAG	1 cut(s)	563
VpaK11BI	GGWCC	1 cut(s)	238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	76
XhoI	CTCGAG	1 cut(s)	142
XmaI	CCCGGG	1 cut(s)	493
XmiI	GTMKAC	1 cut(s)	467
XspI	CTAG	2 cut(s)	38, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.