Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008086.1

Orthogroup ID

OG0008711

Physical Location & Seq

Genomic Coordinates Reverse (-)

23598 .. 24395

Gene Structure 798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008086.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

atgatggctactcagaatctgaatgggcgggtggcaattgtcaccggcggttctcgtggcatcggccgtgaaattgctgtccacctccactccctgggcgcaagacttgtcatcaactacgcttccagttccaagcaggcagacgaattggcctctcacctcaacaacaacaacaacaacaacaacaacaaccagagctcacagttggcggccattgcagtaaaagcagatgtttcagatccagatcaggtgaagctcctcttcgacaaagctgagcaagaattgggtgcccaggtccacatcctggtcaactgcgccggcgtcttggatcccaagtacccgtctctggccgacacctgtgtccaggattgggataacatattcaatgtcaacaccaaaggggccttcttggcttgcagagaggccgccaacagactcccacgcggcgccggcggaagaattatcatgattacctcctcccttgttgggggattgttgccgggatacgccgcctatactgcctccaaggcggccgtggagaccatgaccaaaattgtcgccaaggagctcaagggcaccggcatcactgccaactgtgttgctcccggccctgttgccactgacctcttcttcgccggtaaaagtgaggagaccatcaacaggatcaaggatgcttgccctcttggccgccttggtcagccccacgatgtgtcccaggttgtcggatttttagccggcgatgcaggggagtggatcaacggtcaggtcattagggttaatggtggatttgtcatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00061 ko00333 ko00780 ko01040 ko01100 ko01130 ko01212 map00061 map00333 map00780 map01040 map01100 map01130 map01212

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

265

Amino Acids

27.85

Weight (kDa)

6.95

Isoelectric Point (pI)

23.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13180
fragaria_vesca	FvH4_4g13260
malus_domestica	MD03G1214200.v1.1 MD10G1132600.v1.1 MD14G1002100.v1.1
prunus_persica	Prupe.8G053700_v2.0.a1 Prupe.8G053800_v2.0.a1
pyrus_communis	pycom03g16290 pycom10g11380 pycom49g00170
rosa_chinensis	RchiOBHm_Chr3g0497441
rosa_laevigata	RLG00000022461 RLG00000022463
rosa_multiflora	Rmu_co8233681.1_g000001 Rmu_sc0008086.1_g000011
rosa_roxburghii	Rroxscaffold_166G00440680 Rroxscaffold_6G00388040
rosa_rugosa	Rorug03G0293000
rosa_samantha	Rh3AG336600 Rh3BG374900 Rh3CG370800 Rh3DG371700
rosa_wichuraiana	Rw3G029590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	359
AccB1I	GGYRCC	3 cut(s)	287, 446, 575
AccB7I	CCANNNNNTGG	2 cut(s)	94, 304
AccII	CGCG	1 cut(s)	444
AciI	CCGC	9 cut(s)	28, 48, 209, 426, 444, 453, 510, 530, 688
AclWI	GGATC	5 cut(s)	233, 323, 336, 671, 761
AcoI	YGGCCR	5 cut(s)	64, 210, 348, 531, 685
AcyI	GRCGYC	2 cut(s)	321, 447
AdeI	CACNNNGTG	1 cut(s)	709
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	7 cut(s)	94, 304, 346, 370, 486, 487, 660
AgsI	TTSAA	1 cut(s)	385
AjnI	CCWGG	5 cut(s)	93, 291, 303, 363, 714
AjuI	GAANNNNNNNTTGG	2 cut(s)	389, 421
AluBI	AGCT	4 cut(s)	198, 256, 272, 568
AluI	AGCT	4 cut(s)	198, 256, 272, 568
Alw21I	GWGCWC	2 cut(s)	200, 570
Alw26I	GTCTC	3 cut(s)	348, 533, 644
AlwI	GGATC	5 cut(s)	233, 323, 336, 671, 761
AlwNI	CAGNNNCTG	1 cut(s)	19
AoxI	GGCC	9 cut(s)	64, 150, 210, 348, 402, 423, 531, 607, 685
ArsI	GACNNNNNNTTYG	2 cut(s)	614, 646
AspLEI	GCGC	3 cut(s)	101, 317, 449
AspS9I	GGNCC	3 cut(s)	295, 402, 608
AsuC2I	CCSGG	2 cut(s)	501, 606
AsuHPI	GGTGA	3 cut(s)	34, 149, 262
AvaII	GGWCC	1 cut(s)	295
BaeGI	GKGCMC	2 cut(s)	292, 578
BamHI	GGATCC	1 cut(s)	328
BanI	GGYRCC	3 cut(s)	287, 446, 575
BanII	GRGCYC	2 cut(s)	200, 570
BauI	CACGAG	1 cut(s)	54
Bbv12I	GWGCWC	2 cut(s)	200, 570
BccI	CCATC	1 cut(s)	662
BceAI	ACGGC	2 cut(s)	51, 518
BciT130I	CCWGG	5 cut(s)	95, 293, 305, 365, 716
BciVI	GTATCC	1 cut(s)	497
BcnI	CCSGG	2 cut(s)	501, 606
BcoDI	GTCTC	3 cut(s)	348, 533, 644
BfoI	RGCGCY	1 cut(s)	450
BfuI	GTATCC	1 cut(s)	497
BglI	GCCNNNNNGGC	3 cut(s)	410, 527, 684
BisI	GCNGC	6 cut(s)	210, 426, 445, 510, 531, 688
BlpI	GCTNAGC	1 cut(s)	273
BlsI	GCNGC	6 cut(s)	211, 427, 446, 511, 532, 689
Bme1390I	CCNGG	7 cut(s)	95, 293, 305, 365, 501, 606, 716
Bme18I	GGWCC	1 cut(s)	295
BmgT120I	GGNCC	3 cut(s)	295, 402, 608
BmiI	GGNNCC	5 cut(s)	289, 330, 403, 448, 577
BmrFI	CCNGG	7 cut(s)	95, 293, 305, 365, 501, 606, 716
BmsI	GCATC	4 cut(s)	69, 591, 661, 730
Bpu1102I	GCTNAGC	1 cut(s)	273
BpuEI	CTTGAG	1 cut(s)	554
BpuMI	CCSGG	2 cut(s)	501, 606
BsaBI	GATNNNNATC	1 cut(s)	243
BsaHI	GRCGYC	2 cut(s)	321, 447
BsaI	GGTCTC	2 cut(s)	533, 644
BsaJI	CCNNGG	8 cut(s)	93, 94, 291, 525, 534, 561, 691, 714
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	7 cut(s)	94, 304, 346, 370, 486, 487, 660
Bse118I	RCCGGY	6 cut(s)	44, 317, 449, 578, 635, 734
Bse1I	ACTGG	1 cut(s)	126
Bse3DI	GCAATG	1 cut(s)	213
Bse8I	GATNNNNATC	1 cut(s)	243
BseBI	CCWGG	5 cut(s)	95, 293, 305, 365, 716
BseDI	CCNNGG	8 cut(s)	93, 94, 291, 525, 534, 561, 691, 714
BseGI	GGATG	2 cut(s)	300, 676
BseJI	GATNNNNATC	1 cut(s)	243
BseLI	CCNNNNNNNGG	7 cut(s)	94, 304, 346, 370, 486, 487, 660
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	2 cut(s)	26, 264
BseNI	ACTGG	1 cut(s)	126
BseRI	GAGGAG	3 cut(s)	248, 466, 662
BseSI	GKGCMC	2 cut(s)	292, 578
BseX3I	CGGCCG	2 cut(s)	64, 531
Bsh1236I	CGCG	1 cut(s)	444
Bsh1285I	CGRYCG	2 cut(s)	67, 534
BshFI	GGCC	9 cut(s)	66, 152, 212, 350, 404, 425, 533, 609, 687
BshNI	GGYRCC	3 cut(s)	287, 446, 575
BsiEI	CGRYCG	2 cut(s)	67, 534
BsiHKAI	GWGCWC	2 cut(s)	200, 570
BsiSI	CCGG	8 cut(s)	45, 318, 450, 500, 579, 606, 636, 735
BslFI	GGGAC	1 cut(s)	697
BslI	CCNNNNNNNGG	7 cut(s)	94, 304, 346, 370, 486, 487, 660
BsmAI	GTCTC	3 cut(s)	348, 533, 644
BsmBI	CGTCTC	1 cut(s)	348
BsmFI	GGGAC	1 cut(s)	697
BsnI	GGCC	9 cut(s)	66, 152, 212, 350, 404, 425, 533, 609, 687
Bso31I	GGTCTC	2 cut(s)	533, 644
Bsp1286I	GDGCHC	4 cut(s)	200, 292, 570, 578
Bsp143I	GATC	5 cut(s)	238, 244, 328, 663, 753
Bsp1720I	GCTNAGC	1 cut(s)	273
BspACI	CCGC	9 cut(s)	28, 48, 209, 426, 444, 453, 510, 530, 688
BspANI	GGCC	9 cut(s)	66, 152, 212, 350, 404, 425, 533, 609, 687
BspCNI	CTCAG	2 cut(s)	25, 265
BspFNI	CGCG	1 cut(s)	444
BspHI	TCATGA	1 cut(s)	465
BspLI	GGNNCC	5 cut(s)	289, 330, 403, 448, 577
BspPI	GGATC	5 cut(s)	233, 323, 336, 671, 761
BspT107I	GGYRCC	3 cut(s)	287, 446, 575
BspTNI	GGTCTC	2 cut(s)	533, 644
BsrDI	GCAATG	1 cut(s)	213
BsrFI	RCCGGY	6 cut(s)	44, 317, 449, 578, 635, 734
BsrI	ACTGG	1 cut(s)	126
BssAI	RCCGGY	6 cut(s)	44, 317, 449, 578, 635, 734
BssECI	CCNNGG	8 cut(s)	93, 94, 291, 525, 534, 561, 691, 714
BssMI	GATC	5 cut(s)	238, 244, 328, 663, 753
BssNI	GRCGYC	2 cut(s)	321, 447
BssSI	CACGAG	1 cut(s)	54
BssT1I	CCWWGG	3 cut(s)	525, 561, 691
Bst2BI	CACGAG	1 cut(s)	54
Bst2UI	CCWGG	5 cut(s)	95, 293, 305, 365, 716
Bst4CI	ACNGT	3 cut(s)	204, 596, 761
Bst6I	CTCTTC	2 cut(s)	266, 632
BstACI	GRCGYC	2 cut(s)	321, 447
BstC8I	GCNNGC	6 cut(s)	138, 319, 415, 451, 676, 736
BstDEI	CTNAG	2 cut(s)	12, 273
BstDSI	CCRYGG	1 cut(s)	534
BstF5I	GGATG	2 cut(s)	300, 676
BstFNI	CGCG	1 cut(s)	444
BstH2I	RGCGCY	1 cut(s)	450
BstHHI	GCGC	3 cut(s)	101, 317, 449
BstKTI	GATC	5 cut(s)	241, 247, 331, 666, 756
BstMAI	GTCTC	3 cut(s)	348, 533, 644
BstMBI	GATC	5 cut(s)	238, 244, 328, 663, 753
BstMCI	CGRYCG	2 cut(s)	67, 534
BstMWI	GCNNNNNNNGC	8 cut(s)	215, 224, 410, 450, 518, 527, 684, 740
BstNI	CCWGG	5 cut(s)	95, 293, 305, 365, 716
BstSCI	CCNGG	7 cut(s)	93, 291, 303, 363, 499, 604, 714
BstSLI	GKGCMC	2 cut(s)	292, 578
BstUI	CGCG	1 cut(s)	444
BstX2I	RGATCY	2 cut(s)	238, 328
BstYI	RGATCY	2 cut(s)	238, 328
BstZI	CGGCCG	2 cut(s)	64, 531
BsuI	GTATCC	1 cut(s)	497
BsuRI	GGCC	9 cut(s)	66, 152, 212, 350, 404, 425, 533, 609, 687
BtgI	CCRYGG	1 cut(s)	534
BtgZI	GCGATG	1 cut(s)	753
BtsCI	GGATG	2 cut(s)	300, 676
BtsI	GCAGTG	1 cut(s)	585
BtsIMutI	CAGTG	2 cut(s)	585, 618
Cac8I	GCNNGC	6 cut(s)	138, 319, 415, 451, 676, 736
CaiI	CAGNNNCTG	1 cut(s)	19
CciI	TCATGA	1 cut(s)	465
CfoI	GCGC	3 cut(s)	101, 317, 449
Cfr10I	RCCGGY	6 cut(s)	44, 317, 449, 578, 635, 734
Cfr13I	GGNCC	3 cut(s)	295, 402, 608
CseI	GACGC	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	2 cut(s)	466, 544
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	2 cut(s)	12, 273
DinI	GGCGCC	1 cut(s)	448
DpnI	GATC	5 cut(s)	240, 246, 330, 665, 755
DpnII	GATC	5 cut(s)	238, 244, 328, 663, 753
DraIII	CACNNNGTG	1 cut(s)	709
DrdI	GACNNNNNNGTC	1 cut(s)	359
DseDI	GACNNNNNNGTC	1 cut(s)	359
EaeI	YGGCCR	5 cut(s)	64, 210, 348, 531, 685
EagI	CGGCCG	2 cut(s)	64, 531
Eam1104I	CTCTTC	2 cut(s)	266, 632
EarI	CTCTTC	2 cut(s)	266, 632
EciI	GGCGGA	1 cut(s)	468
Ecl136II	GAGCTC	2 cut(s)	198, 568
EclXI	CGGCCG	2 cut(s)	64, 531
Eco130I	CCWWGG	3 cut(s)	525, 561, 691
Eco24I	GRGCYC	2 cut(s)	200, 570
Eco31I	GGTCTC	2 cut(s)	533, 644
Eco47I	GGWCC	1 cut(s)	295
Eco52I	CGGCCG	2 cut(s)	64, 531
Eco53kI	GAGCTC	2 cut(s)	198, 568
EcoICRI	GAGCTC	2 cut(s)	198, 568
EcoO109I	RGGNCCY	1 cut(s)	402
EcoRII	CCWGG	5 cut(s)	93, 291, 303, 363, 714
EcoT14I	CCWWGG	3 cut(s)	525, 561, 691
EcoT38I	GRGCYC	2 cut(s)	200, 570
EgeI	GGCGCC	1 cut(s)	448
EheI	GGCGCC	1 cut(s)	448
ErhI	CCWWGG	3 cut(s)	525, 561, 691
Esp3I	CGTCTC	1 cut(s)	348
FaeI	CATG	2 cut(s)	469, 547
FaiI	YATR	4 cut(s)	380, 467, 516, 545
FalI	AAGNNNNNCTT	2 cut(s)	245, 277
FaqI	GGGAC	1 cut(s)	697
FatI	CATG	2 cut(s)	465, 543
FauI	CCCGC	1 cut(s)	21
Fnu4HI	GCNGC	6 cut(s)	210, 426, 445, 510, 531, 688
FokI	GGATG	2 cut(s)	287, 683
FriOI	GRGCYC	2 cut(s)	200, 570
Fsp4HI	GCNGC	6 cut(s)	210, 426, 445, 510, 531, 688
GlaI	GCGC	3 cut(s)	100, 316, 448
GluI	GCNGC	6 cut(s)	210, 426, 445, 510, 531, 688
HaeII	RGCGCY	1 cut(s)	450
HaeIII	GGCC	9 cut(s)	66, 152, 212, 350, 404, 425, 533, 609, 687
HapII	CCGG	8 cut(s)	45, 318, 450, 500, 579, 606, 636, 735
HgaI	GACGC	1 cut(s)	310
HhaI	GCGC	3 cut(s)	101, 317, 449
Hin1I	GRCGYC	2 cut(s)	321, 447
Hin1II	CATG	2 cut(s)	469, 547
Hin6I	GCGC	3 cut(s)	99, 315, 447
HinP1I	GCGC	3 cut(s)	99, 315, 447
HincII	GTYRAC	2 cut(s)	310, 391
HindII	GTYRAC	2 cut(s)	310, 391
HinfI	GANTC	2 cut(s)	16, 435
HpaII	CCGG	8 cut(s)	45, 318, 450, 500, 579, 606, 636, 735
HphI	GGTGA	3 cut(s)	34, 149, 262
Hpy166II	GTNNAC	4 cut(s)	82, 298, 310, 391
Hpy188I	TCNGA	5 cut(s)	15, 21, 238, 725, 797
Hpy188III	TCNNGA	2 cut(s)	242, 466
Hpy8I	GTNNAC	4 cut(s)	82, 298, 310, 391
HpyAV	CCTTC	1 cut(s)	415
HpyCH4III	ACNGT	3 cut(s)	204, 596, 761
HpyCH4V	TGCA	3 cut(s)	218, 417, 743
HpyF10VI	GCNNNNNNNGC	8 cut(s)	215, 224, 410, 450, 518, 527, 684, 740
HpyF3I	CTNAG	2 cut(s)	12, 273
Hsp92I	GRCGYC	2 cut(s)	321, 447
Hsp92II	CATG	2 cut(s)	469, 547
HspAI	GCGC	3 cut(s)	99, 315, 447
KasI	GGCGCC	1 cut(s)	446
KroI	GCCGGC	3 cut(s)	317, 449, 734
KroNI	GCCGGC	3 cut(s)	319, 451, 736
Kzo9I	GATC	5 cut(s)	238, 244, 328, 663, 753
LmnI	GCTCC	3 cut(s)	261, 565, 607
LweI	GCATC	4 cut(s)	69, 591, 661, 730
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	5 cut(s)	240, 246, 330, 665, 755
MboI	GATC	5 cut(s)	238, 244, 328, 663, 753
MboII	GAAGA	4 cut(s)	253, 468, 619, 622
MfeI	CAATTG	1 cut(s)	36
MflI	RGATCY	2 cut(s)	238, 328
MhlI	GDGCHC	4 cut(s)	200, 292, 570, 578
MluCI	AATT	6 cut(s)	36, 72, 146, 281, 459, 552
Mly113I	GGCGCC	1 cut(s)	447
MlyI	GAGTC	1 cut(s)	429
MmeI	TCCRAC	1 cut(s)	703
MreI	CGCCGGCG	2 cut(s)	317, 449
MroNI	GCCGGC	3 cut(s)	317, 449, 734
MseI	TTAA	1 cut(s)	777
MspI	CCGG	8 cut(s)	45, 318, 450, 500, 579, 606, 636, 735
MspR9I	CCNGG	7 cut(s)	95, 293, 305, 365, 501, 606, 716
MunI	CAATTG	1 cut(s)	36
MvaI	CCWGG	5 cut(s)	95, 293, 305, 365, 716
MvnI	CGCG	1 cut(s)	444
MwoI	GCNNNNNNNGC	8 cut(s)	215, 224, 410, 450, 518, 527, 684, 740
NaeI	GCCGGC	3 cut(s)	319, 451, 736
NarI	GGCGCC	1 cut(s)	447
NciI	CCSGG	2 cut(s)	501, 606
NdeII	GATC	5 cut(s)	238, 244, 328, 663, 753
NgoMIV	GCCGGC	3 cut(s)	317, 449, 734
NlaIII	CATG	2 cut(s)	469, 547
NlaIV	GGNNCC	5 cut(s)	289, 330, 403, 448, 577
NmuCI	GTSAC	1 cut(s)	40
PagI	TCATGA	1 cut(s)	465
PasI	CCCWGGG	1 cut(s)	94
PdiI	GCCGGC	3 cut(s)	319, 451, 736
PfeI	GAWTC	1 cut(s)	16
PflMI	CCANNNNNTGG	2 cut(s)	94, 304
PfoI	TCCNGGA	1 cut(s)	363
PkrI	GCNGC	6 cut(s)	211, 427, 446, 511, 532, 689
PleI	GAGTC	1 cut(s)	429
PluTI	GGCGCC	1 cut(s)	450
PpsI	GAGTC	1 cut(s)	429
Psp124BI	GAGCTC	2 cut(s)	200, 570
Psp6I	CCWGG	5 cut(s)	93, 291, 303, 363, 714
PspGI	CCWGG	5 cut(s)	93, 291, 303, 363, 714
PspN4I	GGNNCC	5 cut(s)	289, 330, 403, 448, 577
PspPI	GGNCC	3 cut(s)	295, 402, 608
PstNI	CAGNNNCTG	1 cut(s)	19
PsuI	RGATCY	2 cut(s)	238, 328
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
SacI	GAGCTC	2 cut(s)	200, 570
SaqAI	TTAA	1 cut(s)	777
SatI	GCNGC	6 cut(s)	210, 426, 445, 510, 531, 688
Sau3AI	GATC	5 cut(s)	238, 244, 328, 663, 753
Sau96I	GGNCC	3 cut(s)	295, 402, 608
SchI	GAGTC	1 cut(s)	429
ScrFI	CCNGG	7 cut(s)	95, 293, 305, 365, 501, 606, 716
SduI	GDGCHC	4 cut(s)	200, 292, 570, 578
SfaNI	GCATC	4 cut(s)	69, 591, 661, 730
SfoI	GGCGCC	1 cut(s)	448
SgrAI	CRCCGGYG	3 cut(s)	44, 317, 449
SinI	GGWCC	1 cut(s)	295
SmlI	CTYRAG	1 cut(s)	569
SmoI	CTYRAG	1 cut(s)	569
Sse9I	AATT	6 cut(s)	36, 72, 146, 281, 459, 552
SsiI	CCGC	9 cut(s)	28, 48, 209, 426, 444, 453, 510, 530, 688
SspDI	GGCGCC	1 cut(s)	446
SstI	GAGCTC	2 cut(s)	200, 570
StyD4I	CCNGG	7 cut(s)	93, 291, 303, 363, 499, 604, 714
StyI	CCWWGG	3 cut(s)	525, 561, 691
TaaI	ACNGT	3 cut(s)	204, 596, 761
TaqI	TCGA	1 cut(s)	264
TasI	AATT	6 cut(s)	36, 72, 146, 281, 459, 552
TauI	GCSGC	6 cut(s)	212, 428, 447, 512, 533, 690
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	1 cut(s)	777
Tru9I	TTAA	1 cut(s)	777
TscAI	CASTG	2 cut(s)	592, 625
TseFI	GTSAC	1 cut(s)	40
Tsp45I	GTSAC	1 cut(s)	40
TspRI	CASTG	2 cut(s)	592, 625
Van91I	CCANNNNNTGG	2 cut(s)	94, 304
VpaK11BI	GGWCC	1 cut(s)	295
XcmI	CCANNNNNNNNNTGG	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.