Rw3G029590

Short-chain type dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
45876788 .. 45877934
1147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G029590.1

Sequence Viewer

Length: 780 bp
ATGATGGCTACTCAGAATCTGAATGGGCGGGTGGCAATTGTCACCGGCGGTTCTCGTGGCATCGGCCGTGAAATTGCTGTCCACCTCCACTCCCTGGGCGCAAGACTTGTCATCAACTACGCTTCCAGTTCCAAGCAGGCAGACGAATTGGCCTCTCACCTCAACAACAACAACAAGAGCTCACAGTTGGCGGCCATTGCAGTAAAAGCAGATGTTTCAGATCCAGATCAGGTGAAGCTCCTCTTCGACAAAGCTGAGCAAGAATTGGGTGCCCAGGTCCACATCCTGGTCAACTGCGCCGGCGTCTTGGATCCCAAGTACCCGTCTCTGGCCGACACCTGTGTCCAGGATTGGGATAACATATTCAATGTCAACACCAAAGGGGCCTTCTTGGCTTGCAGAGAGGCCGCCAACAGACTCCCACGCGGCGCCGGCGGAAGAATTATCATGATTACCTCCTCCCTTGTTGGGGGACTGATGCCGGGATACGCCGCCTATACTGCCTCCAAGGCGGCCGTGGAGACCATGACCAAAATTGTCGCCAAGGAGCTCAAGGGCACCGGCATCACTGCCAACTGTGTTGCTCCCGGCCCTGTTGCCACTGACCTCTTCTTCGCCGGTAAAAGTGAGGAGACCATCAACAGGATCAAGGATGCTTGCCCTCTTGGCCGCCTTGGTCAGCCCCACGATGTGTCCCAGGTTGTCGGATTTTTAGCCGGCGATGCAGGGGAGTGGATCAACGGTCAGGTCATTAGGGTTAATGGTGGATTTGTCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

259

Amino Acids

27.18

Weight (kDa)

7.66

Isoelectric Point (pI)

24.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 10 - 204 3.9e-49 short chain dehydrogenase
SDR PF23441 10 - 257 2.5e-09 SDR-like rossmann domain
KR PF08659 13 - 189 9.3e-14 KR domain
adh_short_C2 PF13561 19 - 257 1.7e-55 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 341
AccB1I GGYRCC 3 cut(s) 269, 428, 557
AccB7I CCANNNNNTGG 2 cut(s) 94, 286
AccII CGCG 1 cut(s) 426
AciI CCGC 9 cut(s) 28, 48, 191, 408, 426, 435, 492, 512, 670
AclWI GGATC 5 cut(s) 215, 305, 318, 653, 743
AcoI YGGCCR 5 cut(s) 64, 192, 330, 513, 667
AcyI GRCGYC 2 cut(s) 303, 429
AdeI CACNNNGTG 1 cut(s) 691
AfaI GTAC 1 cut(s) 320
AfiI CCNNNNNNNGG 7 cut(s) 94, 286, 328, 352, 468, 469, 642
AgsI TTSAA 1 cut(s) 367
AjnI CCWGG 5 cut(s) 93, 273, 285, 345, 696
AjuI GAANNNNNNNTTGG 2 cut(s) 371, 403
AluBI AGCT 4 cut(s) 180, 238, 254, 550
AluI AGCT 4 cut(s) 180, 238, 254, 550
Alw21I GWGCWC 2 cut(s) 182, 552
Alw26I GTCTC 3 cut(s) 330, 515, 626
AlwI GGATC 5 cut(s) 215, 305, 318, 653, 743
AlwNI CAGNNNCTG 1 cut(s) 19
AoxI GGCC 9 cut(s) 64, 150, 192, 330, 384, 405, 513, 589, 667
ArsI GACNNNNNNTTYG 2 cut(s) 596, 628
AspLEI GCGC 3 cut(s) 101, 299, 431
AspS9I GGNCC 3 cut(s) 277, 384, 590
AsuC2I CCSGG 2 cut(s) 483, 588
AsuHPI GGTGA 3 cut(s) 34, 149, 244
AvaII GGWCC 1 cut(s) 277
BaeGI GKGCMC 2 cut(s) 274, 560
BamHI GGATCC 1 cut(s) 310
BanI GGYRCC 3 cut(s) 269, 428, 557
BanII GRGCYC 2 cut(s) 182, 552
BauI CACGAG 1 cut(s) 54
Bbv12I GWGCWC 2 cut(s) 182, 552
BccI CCATC 1 cut(s) 644
BceAI ACGGC 2 cut(s) 51, 500
BciT130I CCWGG 5 cut(s) 95, 275, 287, 347, 698
BciVI GTATCC 1 cut(s) 479
BcnI CCSGG 2 cut(s) 483, 588
BcoDI GTCTC 3 cut(s) 330, 515, 626
BfoI RGCGCY 1 cut(s) 432
BfuI GTATCC 1 cut(s) 479
BglI GCCNNNNNGGC 3 cut(s) 392, 509, 666
BisI GCNGC 6 cut(s) 192, 408, 427, 492, 513, 670
BlpI GCTNAGC 1 cut(s) 255
BlsI GCNGC 6 cut(s) 193, 409, 428, 493, 514, 671
Bme1390I CCNGG 7 cut(s) 95, 275, 287, 347, 483, 588, 698
Bme18I GGWCC 1 cut(s) 277
BmgT120I GGNCC 3 cut(s) 277, 384, 590
BmiI GGNNCC 5 cut(s) 271, 312, 385, 430, 559
BmrFI CCNGG 7 cut(s) 95, 275, 287, 347, 483, 588, 698
BmsI GCATC 5 cut(s) 69, 468, 573, 643, 712
Bpu1102I GCTNAGC 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 536
BpuMI CCSGG 2 cut(s) 483, 588
BsaBI GATNNNNATC 1 cut(s) 225
BsaHI GRCGYC 2 cut(s) 303, 429
BsaI GGTCTC 2 cut(s) 515, 626
BsaJI CCNNGG 8 cut(s) 93, 94, 273, 507, 516, 543, 673, 696
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 7 cut(s) 94, 286, 328, 352, 468, 469, 642
Bse118I RCCGGY 6 cut(s) 44, 299, 431, 560, 617, 716
Bse1I ACTGG 1 cut(s) 126
Bse3DI GCAATG 1 cut(s) 195
Bse8I GATNNNNATC 1 cut(s) 225
BseBI CCWGG 5 cut(s) 95, 275, 287, 347, 698
BseDI CCNNGG 8 cut(s) 93, 94, 273, 507, 516, 543, 673, 696
BseGI GGATG 2 cut(s) 282, 658
BseJI GATNNNNATC 1 cut(s) 225
BseLI CCNNNNNNNGG 7 cut(s) 94, 286, 328, 352, 468, 469, 642
BseMI GCAATG 1 cut(s) 195
BseMII CTCAG 2 cut(s) 26, 246
BseNI ACTGG 1 cut(s) 126
BseRI GAGGAG 3 cut(s) 230, 448, 644
BseSI GKGCMC 2 cut(s) 274, 560
BseX3I CGGCCG 2 cut(s) 64, 513
Bsh1236I CGCG 1 cut(s) 426
Bsh1285I CGRYCG 2 cut(s) 67, 516
BshFI GGCC 9 cut(s) 66, 152, 194, 332, 386, 407, 515, 591, 669
BshNI GGYRCC 3 cut(s) 269, 428, 557
BsiEI CGRYCG 2 cut(s) 67, 516
BsiHKAI GWGCWC 2 cut(s) 182, 552
BsiSI CCGG 8 cut(s) 45, 300, 432, 482, 561, 588, 618, 717
BslFI GGGAC 2 cut(s) 486, 679
BslI CCNNNNNNNGG 7 cut(s) 94, 286, 328, 352, 468, 469, 642
BsmAI GTCTC 3 cut(s) 330, 515, 626
BsmBI CGTCTC 1 cut(s) 330
BsmFI GGGAC 2 cut(s) 486, 679
BsnI GGCC 9 cut(s) 66, 152, 194, 332, 386, 407, 515, 591, 669
Bso31I GGTCTC 2 cut(s) 515, 626
Bsp1286I GDGCHC 4 cut(s) 182, 274, 552, 560
Bsp143I GATC 5 cut(s) 220, 226, 310, 645, 735
Bsp1720I GCTNAGC 1 cut(s) 255
BspACI CCGC 9 cut(s) 28, 48, 191, 408, 426, 435, 492, 512, 670
BspANI GGCC 9 cut(s) 66, 152, 194, 332, 386, 407, 515, 591, 669
BspCNI CTCAG 2 cut(s) 25, 247
BspFNI CGCG 1 cut(s) 426
BspHI TCATGA 1 cut(s) 447
BspLI GGNNCC 5 cut(s) 271, 312, 385, 430, 559
BspPI GGATC 5 cut(s) 215, 305, 318, 653, 743
BspT107I GGYRCC 3 cut(s) 269, 428, 557
BspTNI GGTCTC 2 cut(s) 515, 626
BsrDI GCAATG 1 cut(s) 195
BsrFI RCCGGY 6 cut(s) 44, 299, 431, 560, 617, 716
BsrI ACTGG 1 cut(s) 126
BssAI RCCGGY 6 cut(s) 44, 299, 431, 560, 617, 716
BssECI CCNNGG 8 cut(s) 93, 94, 273, 507, 516, 543, 673, 696
BssMI GATC 5 cut(s) 220, 226, 310, 645, 735
BssNI GRCGYC 2 cut(s) 303, 429
BssSI CACGAG 1 cut(s) 54
BssT1I CCWWGG 3 cut(s) 507, 543, 673
Bst2BI CACGAG 1 cut(s) 54
Bst2UI CCWGG 5 cut(s) 95, 275, 287, 347, 698
Bst4CI ACNGT 3 cut(s) 186, 578, 743
Bst6I CTCTTC 2 cut(s) 248, 614
BstACI GRCGYC 2 cut(s) 303, 429
BstC8I GCNNGC 6 cut(s) 138, 301, 397, 433, 658, 718
BstDEI CTNAG 2 cut(s) 12, 255
BstDSI CCRYGG 1 cut(s) 516
BstF5I GGATG 2 cut(s) 282, 658
BstFNI CGCG 1 cut(s) 426
BstH2I RGCGCY 1 cut(s) 432
BstHHI GCGC 3 cut(s) 101, 299, 431
BstKTI GATC 5 cut(s) 223, 229, 313, 648, 738
BstMAI GTCTC 3 cut(s) 330, 515, 626
BstMBI GATC 5 cut(s) 220, 226, 310, 645, 735
BstMCI CGRYCG 2 cut(s) 67, 516
BstMWI GCNNNNNNNGC 8 cut(s) 197, 206, 392, 432, 500, 509, 666, 722
BstNI CCWGG 5 cut(s) 95, 275, 287, 347, 698
BstSCI CCNGG 7 cut(s) 93, 273, 285, 345, 481, 586, 696
BstSLI GKGCMC 2 cut(s) 274, 560
BstUI CGCG 1 cut(s) 426
BstX2I RGATCY 2 cut(s) 220, 310
BstYI RGATCY 2 cut(s) 220, 310
BstZI CGGCCG 2 cut(s) 64, 513
BsuI GTATCC 1 cut(s) 479
BsuRI GGCC 9 cut(s) 66, 152, 194, 332, 386, 407, 515, 591, 669
BtgI CCRYGG 1 cut(s) 516
BtgZI GCGATG 1 cut(s) 735
BtsCI GGATG 2 cut(s) 282, 658
BtsI GCAGTG 1 cut(s) 567
BtsIMutI CAGTG 2 cut(s) 567, 600
Cac8I GCNNGC 6 cut(s) 138, 301, 397, 433, 658, 718
CaiI CAGNNNCTG 1 cut(s) 19
CciI TCATGA 1 cut(s) 447
CfoI GCGC 3 cut(s) 101, 299, 431
Cfr10I RCCGGY 6 cut(s) 44, 299, 431, 560, 617, 716
Cfr13I GGNCC 3 cut(s) 277, 384, 590
CseI GACGC 1 cut(s) 292
Csp6I GTAC 1 cut(s) 319
CviAII CATG 2 cut(s) 448, 526
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 2 cut(s) 12, 255
DinI GGCGCC 1 cut(s) 430
DpnI GATC 5 cut(s) 222, 228, 312, 647, 737
DpnII GATC 5 cut(s) 220, 226, 310, 645, 735
DraIII CACNNNGTG 1 cut(s) 691
DrdI GACNNNNNNGTC 1 cut(s) 341
DseDI GACNNNNNNGTC 1 cut(s) 341
EaeI YGGCCR 5 cut(s) 64, 192, 330, 513, 667
EagI CGGCCG 2 cut(s) 64, 513
Eam1104I CTCTTC 2 cut(s) 248, 614
EarI CTCTTC 2 cut(s) 248, 614
EciI GGCGGA 1 cut(s) 450
Ecl136II GAGCTC 2 cut(s) 180, 550
EclXI CGGCCG 2 cut(s) 64, 513
Eco130I CCWWGG 3 cut(s) 507, 543, 673
Eco24I GRGCYC 2 cut(s) 182, 552
Eco31I GGTCTC 2 cut(s) 515, 626
Eco47I GGWCC 1 cut(s) 277
Eco52I CGGCCG 2 cut(s) 64, 513
Eco53kI GAGCTC 2 cut(s) 180, 550
EcoICRI GAGCTC 2 cut(s) 180, 550
EcoO109I RGGNCCY 1 cut(s) 384
EcoRII CCWGG 5 cut(s) 93, 273, 285, 345, 696
EcoT14I CCWWGG 3 cut(s) 507, 543, 673
EcoT38I GRGCYC 2 cut(s) 182, 552
EgeI GGCGCC 1 cut(s) 430
EheI GGCGCC 1 cut(s) 430
ErhI CCWWGG 3 cut(s) 507, 543, 673
Esp3I CGTCTC 1 cut(s) 330
FaeI CATG 2 cut(s) 451, 529
FaiI YATR 4 cut(s) 362, 449, 498, 527
FalI AAGNNNNNCTT 2 cut(s) 227, 259
FaqI GGGAC 2 cut(s) 486, 679
FatI CATG 2 cut(s) 447, 525
FauI CCCGC 1 cut(s) 21
Fnu4HI GCNGC 6 cut(s) 192, 408, 427, 492, 513, 670
FokI GGATG 2 cut(s) 269, 665
FriOI GRGCYC 2 cut(s) 182, 552
Fsp4HI GCNGC 6 cut(s) 192, 408, 427, 492, 513, 670
GlaI GCGC 3 cut(s) 100, 298, 430
GluI GCNGC 6 cut(s) 192, 408, 427, 492, 513, 670
HaeII RGCGCY 1 cut(s) 432
HaeIII GGCC 9 cut(s) 66, 152, 194, 332, 386, 407, 515, 591, 669
HapII CCGG 8 cut(s) 45, 300, 432, 482, 561, 588, 618, 717
HgaI GACGC 1 cut(s) 292
HhaI GCGC 3 cut(s) 101, 299, 431
Hin1I GRCGYC 2 cut(s) 303, 429
Hin1II CATG 2 cut(s) 451, 529
Hin6I GCGC 3 cut(s) 99, 297, 429
HinP1I GCGC 3 cut(s) 99, 297, 429
HincII GTYRAC 2 cut(s) 292, 373
HindII GTYRAC 2 cut(s) 292, 373
HinfI GANTC 2 cut(s) 16, 417
HpaII CCGG 8 cut(s) 45, 300, 432, 482, 561, 588, 618, 717
HphI GGTGA 3 cut(s) 34, 149, 244
Hpy166II GTNNAC 4 cut(s) 82, 280, 292, 373
Hpy188I TCNGA 5 cut(s) 15, 21, 220, 707, 779
Hpy188III TCNNGA 2 cut(s) 224, 448
Hpy8I GTNNAC 4 cut(s) 82, 280, 292, 373
HpyAV CCTTC 1 cut(s) 397
HpyCH4III ACNGT 3 cut(s) 186, 578, 743
HpyCH4V TGCA 3 cut(s) 200, 399, 725
HpyF10VI GCNNNNNNNGC 8 cut(s) 197, 206, 392, 432, 500, 509, 666, 722
HpyF3I CTNAG 2 cut(s) 12, 255
Hsp92I GRCGYC 2 cut(s) 303, 429
Hsp92II CATG 2 cut(s) 451, 529
HspAI GCGC 3 cut(s) 99, 297, 429
KasI GGCGCC 1 cut(s) 428
KroI GCCGGC 3 cut(s) 299, 431, 716
KroNI GCCGGC 3 cut(s) 301, 433, 718
Kzo9I GATC 5 cut(s) 220, 226, 310, 645, 735
LmnI GCTCC 3 cut(s) 243, 547, 589
LweI GCATC 5 cut(s) 69, 468, 573, 643, 712
MaeIII GTNAC 1 cut(s) 40
MalI GATC 5 cut(s) 222, 228, 312, 647, 737
MboI GATC 5 cut(s) 220, 226, 310, 645, 735
MboII GAAGA 4 cut(s) 235, 450, 601, 604
MfeI CAATTG 1 cut(s) 36
MflI RGATCY 2 cut(s) 220, 310
MhlI GDGCHC 4 cut(s) 182, 274, 552, 560
MluCI AATT 6 cut(s) 36, 72, 146, 263, 441, 534
Mly113I GGCGCC 1 cut(s) 429
MlyI GAGTC 1 cut(s) 411
MmeI TCCRAC 1 cut(s) 685
MreI CGCCGGCG 2 cut(s) 299, 431
MroNI GCCGGC 3 cut(s) 299, 431, 716
MseI TTAA 1 cut(s) 759
MspI CCGG 8 cut(s) 45, 300, 432, 482, 561, 588, 618, 717
MspR9I CCNGG 7 cut(s) 95, 275, 287, 347, 483, 588, 698
MunI CAATTG 1 cut(s) 36
MvaI CCWGG 5 cut(s) 95, 275, 287, 347, 698
MvnI CGCG 1 cut(s) 426
MwoI GCNNNNNNNGC 8 cut(s) 197, 206, 392, 432, 500, 509, 666, 722
NaeI GCCGGC 3 cut(s) 301, 433, 718
NarI GGCGCC 1 cut(s) 429
NciI CCSGG 2 cut(s) 483, 588
NdeII GATC 5 cut(s) 220, 226, 310, 645, 735
NgoMIV GCCGGC 3 cut(s) 299, 431, 716
NlaIII CATG 2 cut(s) 451, 529
NlaIV GGNNCC 5 cut(s) 271, 312, 385, 430, 559
NmuCI GTSAC 1 cut(s) 40
PagI TCATGA 1 cut(s) 447
PasI CCCWGGG 1 cut(s) 94
PdiI GCCGGC 3 cut(s) 301, 433, 718
PfeI GAWTC 1 cut(s) 16
PflMI CCANNNNNTGG 2 cut(s) 94, 286
PfoI TCCNGGA 1 cut(s) 345
PkrI GCNGC 6 cut(s) 193, 409, 428, 493, 514, 671
PleI GAGTC 1 cut(s) 411
PluTI GGCGCC 1 cut(s) 432
PpsI GAGTC 1 cut(s) 411
Psp124BI GAGCTC 2 cut(s) 182, 552
Psp6I CCWGG 5 cut(s) 93, 273, 285, 345, 696
PspGI CCWGG 5 cut(s) 93, 273, 285, 345, 696
PspN4I GGNNCC 5 cut(s) 271, 312, 385, 430, 559
PspPI GGNCC 3 cut(s) 277, 384, 590
PstNI CAGNNNCTG 1 cut(s) 19
PsuI RGATCY 2 cut(s) 220, 310
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
SacI GAGCTC 2 cut(s) 182, 552
SaqAI TTAA 1 cut(s) 759
SatI GCNGC 6 cut(s) 192, 408, 427, 492, 513, 670
Sau3AI GATC 5 cut(s) 220, 226, 310, 645, 735
Sau96I GGNCC 3 cut(s) 277, 384, 590
SchI GAGTC 1 cut(s) 411
ScrFI CCNGG 7 cut(s) 95, 275, 287, 347, 483, 588, 698
SduI GDGCHC 4 cut(s) 182, 274, 552, 560
SfaNI GCATC 5 cut(s) 69, 468, 573, 643, 712
SfoI GGCGCC 1 cut(s) 430
SgrAI CRCCGGYG 3 cut(s) 44, 299, 431
SinI GGWCC 1 cut(s) 277
SmlI CTYRAG 1 cut(s) 551
SmoI CTYRAG 1 cut(s) 551
Sse9I AATT 6 cut(s) 36, 72, 146, 263, 441, 534
SsiI CCGC 9 cut(s) 28, 48, 191, 408, 426, 435, 492, 512, 670
SspDI GGCGCC 1 cut(s) 428
SstI GAGCTC 2 cut(s) 182, 552
StyD4I CCNGG 7 cut(s) 93, 273, 285, 345, 481, 586, 696
StyI CCWWGG 3 cut(s) 507, 543, 673
TaaI ACNGT 3 cut(s) 186, 578, 743
TaqI TCGA 1 cut(s) 246
TasI AATT 6 cut(s) 36, 72, 146, 263, 441, 534
TauI GCSGC 6 cut(s) 194, 410, 429, 494, 515, 672
TfiI GAWTC 1 cut(s) 16
Tru1I TTAA 1 cut(s) 759
Tru9I TTAA 1 cut(s) 759
TscAI CASTG 2 cut(s) 574, 607
TseFI GTSAC 1 cut(s) 40
Tsp45I GTSAC 1 cut(s) 40
TspRI CASTG 2 cut(s) 574, 607
Van91I CCANNNNNTGG 2 cut(s) 94, 286
VpaK11BI GGWCC 1 cut(s) 277
XcmI CCANNNNNNNNNTGG 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.