Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000166

Orthogroup ID

OG0008711

Physical Location & Seq

Genomic Coordinates Reverse (-)

3198 .. 3977

Gene Structure 780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_166G00440680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGATGGCTACTCAGAATCTGAATGGGCGAGTGGCAATTGTCACCGGCGGTTCTCGTGGCATCGGCCGTGAAATTGCTGTCCACCTCCACTCCCTGGGCGCAAGACTTGTCATCAACTACGCTTCCAGTTCCAAGCAGGCAGACGAATTGGCCTCCCACCTCAACAACAACAACAAGAGCTCACAGTTGGCGGCCATTGCAGTAAAAGCAGATGTTTCAGATCCAGATCAGGTGAAGCTCCTCTTCGACAAAGCCGAGCAAGAATTGGGTGCCCAGGTCCACATCCTGGTCAACTGCGCCGGCGTCTTGGATCCCAAGTACCCGTCTCTGGCCGACACCTGTGTCCAGGACTGGGATAACATATTCAATGTCAACACCAAAGGGGCCTTCTTGGCTTGCAGAGAGGCCGCCAACAGACTCCCACGCGGCGCTGGCGGAAGAATTATCATGATTACCTCCTCCCTTGTTGGGGGACTGATGCCGGGATACGCCGCCTATACTGCCTCCAAGGCCGCCGTGGAGACCATGACCAAAATTGTCGCCAAGGAGCTCAAGGGCACCGGCATCACTGCCAACTGTGTTGCTCCCGGCCCTGTTGCCACCGACCTCTTCTTCGCCGGTAAAAGTGAGGAGACCATCAACAGGATCAAGGATGCTTGCCCTCTTGGCCGCCTTGGTCAGCCCCAAGATGTGTCCCAGGTTGTCGGATTTTTAGCCGGCGATGCAGGGGAGTGGATCAACGGTCAGGTCATTAGGGTTAATGGTGGATTTGTCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00061 ko00333 ko00780 ko01040 ko01100 ko01130 ko01212 map00061 map00333 map00780 map01040 map01100 map01130 map01212

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

259

Amino Acids

27.17

Weight (kDa)

7.64

Isoelectric Point (pI)

26.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	10 - 204	3.9e-49	short chain dehydrogenase
SDR	PF23441	10 - 257	1.9e-09	SDR-like rossmann domain
KR	PF08659	13 - 189	9.3e-14	KR domain
adh_short_C2	PF13561	19 - 257	1.1e-55	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13180
fragaria_vesca	FvH4_4g13260
malus_domestica	MD03G1214200.v1.1 MD10G1132600.v1.1 MD14G1002100.v1.1
prunus_persica	Prupe.8G053700_v2.0.a1 Prupe.8G053800_v2.0.a1
pyrus_communis	pycom03g16290 pycom10g11380 pycom49g00170
rosa_chinensis	RchiOBHm_Chr3g0497441
rosa_laevigata	RLG00000022461 RLG00000022463
rosa_multiflora	Rmu_co8233681.1_g000001 Rmu_sc0008086.1_g000011
rosa_roxburghii	Rroxscaffold_166G00440680 Rroxscaffold_6G00388040
rosa_rugosa	Rorug03G0293000
rosa_samantha	Rh3AG336600 Rh3BG374900 Rh3CG370800 Rh3DG371700
rosa_wichuraiana	Rw3G029590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	341
AccB1I	GGYRCC	2 cut(s)	269, 557
AccB7I	CCANNNNNTGG	2 cut(s)	94, 286
AccII	CGCG	1 cut(s)	426
AciI	CCGC	8 cut(s)	48, 191, 408, 426, 435, 492, 513, 670
AclWI	GGATC	5 cut(s)	215, 305, 318, 653, 743
AcoI	YGGCCR	4 cut(s)	64, 192, 330, 667
AcyI	GRCGYC	1 cut(s)	303
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	7 cut(s)	94, 286, 328, 352, 468, 469, 642
AgsI	TTSAA	1 cut(s)	367
AjnI	CCWGG	5 cut(s)	93, 273, 285, 345, 696
AjuI	GAANNNNNNNTTGG	2 cut(s)	371, 403
AluBI	AGCT	3 cut(s)	180, 238, 550
AluI	AGCT	3 cut(s)	180, 238, 550
Alw21I	GWGCWC	2 cut(s)	182, 552
Alw26I	GTCTC	3 cut(s)	330, 515, 626
AlwI	GGATC	5 cut(s)	215, 305, 318, 653, 743
AlwNI	CAGNNNCTG	1 cut(s)	19
AoxI	GGCC	9 cut(s)	64, 150, 192, 330, 384, 405, 510, 589, 667
ArsI	GACNNNNNNTTYG	2 cut(s)	596, 628
AspLEI	GCGC	3 cut(s)	101, 299, 431
AspS9I	GGNCC	3 cut(s)	277, 384, 590
AsuC2I	CCSGG	2 cut(s)	483, 588
AsuHPI	GGTGA	2 cut(s)	34, 244
AvaII	GGWCC	1 cut(s)	277
BaeGI	GKGCMC	2 cut(s)	274, 560
BamHI	GGATCC	1 cut(s)	310
BanI	GGYRCC	2 cut(s)	269, 557
BanII	GRGCYC	2 cut(s)	182, 552
BauI	CACGAG	1 cut(s)	54
Bbv12I	GWGCWC	2 cut(s)	182, 552
BccI	CCATC	1 cut(s)	644
BceAI	ACGGC	2 cut(s)	51, 500
BciT130I	CCWGG	5 cut(s)	95, 275, 287, 347, 698
BciVI	GTATCC	1 cut(s)	479
BcnI	CCSGG	2 cut(s)	483, 588
BcoDI	GTCTC	3 cut(s)	330, 515, 626
BfoI	RGCGCY	1 cut(s)	432
BfuI	GTATCC	1 cut(s)	479
BglI	GCCNNNNNGGC	3 cut(s)	392, 509, 666
BisI	GCNGC	6 cut(s)	192, 408, 427, 492, 513, 670
BlsI	GCNGC	6 cut(s)	193, 409, 428, 493, 514, 671
Bme1390I	CCNGG	7 cut(s)	95, 275, 287, 347, 483, 588, 698
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	3 cut(s)	277, 384, 590
BmiI	GGNNCC	4 cut(s)	271, 312, 385, 559
BmrFI	CCNGG	7 cut(s)	95, 275, 287, 347, 483, 588, 698
BmrI	ACTGGG	1 cut(s)	361
BmsI	GCATC	5 cut(s)	69, 468, 573, 643, 712
BmuI	ACTGGG	1 cut(s)	361
BpuEI	CTTGAG	1 cut(s)	536
BpuMI	CCSGG	2 cut(s)	483, 588
BsaBI	GATNNNNATC	1 cut(s)	225
BsaHI	GRCGYC	1 cut(s)	303
BsaI	GGTCTC	2 cut(s)	515, 626
BsaJI	CCNNGG	8 cut(s)	93, 94, 273, 507, 516, 543, 673, 696
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	7 cut(s)	94, 286, 328, 352, 468, 469, 642
Bse118I	RCCGGY	5 cut(s)	44, 299, 560, 617, 716
Bse1I	ACTGG	2 cut(s)	126, 356
Bse3DI	GCAATG	1 cut(s)	195
Bse8I	GATNNNNATC	1 cut(s)	225
BseBI	CCWGG	5 cut(s)	95, 275, 287, 347, 698
BseDI	CCNNGG	8 cut(s)	93, 94, 273, 507, 516, 543, 673, 696
BseGI	GGATG	2 cut(s)	282, 658
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	7 cut(s)	94, 286, 328, 352, 468, 469, 642
BseMI	GCAATG	1 cut(s)	195
BseMII	CTCAG	1 cut(s)	26
BseNI	ACTGG	2 cut(s)	126, 356
BseRI	GAGGAG	3 cut(s)	230, 448, 644
BseSI	GKGCMC	2 cut(s)	274, 560
BseX3I	CGGCCG	1 cut(s)	64
Bsh1236I	CGCG	1 cut(s)	426
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	9 cut(s)	66, 152, 194, 332, 386, 407, 512, 591, 669
BshNI	GGYRCC	2 cut(s)	269, 557
BsiEI	CGRYCG	1 cut(s)	67
BsiHKAI	GWGCWC	2 cut(s)	182, 552
BsiSI	CCGG	7 cut(s)	45, 300, 482, 561, 588, 618, 717
BslFI	GGGAC	2 cut(s)	486, 679
BslI	CCNNNNNNNGG	7 cut(s)	94, 286, 328, 352, 468, 469, 642
BsmAI	GTCTC	3 cut(s)	330, 515, 626
BsmBI	CGTCTC	1 cut(s)	330
BsmFI	GGGAC	2 cut(s)	486, 679
BsnI	GGCC	9 cut(s)	66, 152, 194, 332, 386, 407, 512, 591, 669
Bso31I	GGTCTC	2 cut(s)	515, 626
Bsp1286I	GDGCHC	4 cut(s)	182, 274, 552, 560
Bsp143I	GATC	5 cut(s)	220, 226, 310, 645, 735
BspACI	CCGC	8 cut(s)	48, 191, 408, 426, 435, 492, 513, 670
BspANI	GGCC	9 cut(s)	66, 152, 194, 332, 386, 407, 512, 591, 669
BspCNI	CTCAG	1 cut(s)	25
BspFNI	CGCG	1 cut(s)	426
BspHI	TCATGA	1 cut(s)	447
BspLI	GGNNCC	4 cut(s)	271, 312, 385, 559
BspPI	GGATC	5 cut(s)	215, 305, 318, 653, 743
BspT107I	GGYRCC	2 cut(s)	269, 557
BspTNI	GGTCTC	2 cut(s)	515, 626
BsrDI	GCAATG	1 cut(s)	195
BsrFI	RCCGGY	5 cut(s)	44, 299, 560, 617, 716
BsrI	ACTGG	2 cut(s)	126, 356
BssAI	RCCGGY	5 cut(s)	44, 299, 560, 617, 716
BssECI	CCNNGG	8 cut(s)	93, 94, 273, 507, 516, 543, 673, 696
BssMI	GATC	5 cut(s)	220, 226, 310, 645, 735
BssNI	GRCGYC	1 cut(s)	303
BssSI	CACGAG	1 cut(s)	54
BssT1I	CCWWGG	3 cut(s)	507, 543, 673
Bst2BI	CACGAG	1 cut(s)	54
Bst2UI	CCWGG	5 cut(s)	95, 275, 287, 347, 698
Bst4CI	ACNGT	3 cut(s)	186, 578, 743
Bst6I	CTCTTC	2 cut(s)	248, 614
BstACI	GRCGYC	1 cut(s)	303
BstC8I	GCNNGC	6 cut(s)	138, 301, 397, 433, 658, 718
BstDEI	CTNAG	1 cut(s)	12
BstDSI	CCRYGG	1 cut(s)	516
BstF5I	GGATG	2 cut(s)	282, 658
BstFNI	CGCG	1 cut(s)	426
BstH2I	RGCGCY	1 cut(s)	432
BstHHI	GCGC	3 cut(s)	101, 299, 431
BstKTI	GATC	5 cut(s)	223, 229, 313, 648, 738
BstMAI	GTCTC	3 cut(s)	330, 515, 626
BstMBI	GATC	5 cut(s)	220, 226, 310, 645, 735
BstMCI	CGRYCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	8 cut(s)	197, 206, 392, 432, 500, 509, 666, 722
BstNI	CCWGG	5 cut(s)	95, 275, 287, 347, 698
BstSCI	CCNGG	7 cut(s)	93, 273, 285, 345, 481, 586, 696
BstSLI	GKGCMC	2 cut(s)	274, 560
BstUI	CGCG	1 cut(s)	426
BstX2I	RGATCY	2 cut(s)	220, 310
BstYI	RGATCY	2 cut(s)	220, 310
BstZI	CGGCCG	1 cut(s)	64
BsuI	GTATCC	1 cut(s)	479
BsuRI	GGCC	9 cut(s)	66, 152, 194, 332, 386, 407, 512, 591, 669
BtgI	CCRYGG	1 cut(s)	516
BtgZI	GCGATG	1 cut(s)	735
BtsCI	GGATG	2 cut(s)	282, 658
BtsI	GCAGTG	1 cut(s)	567
BtsIMutI	CAGTG	1 cut(s)	567
Cac8I	GCNNGC	6 cut(s)	138, 301, 397, 433, 658, 718
CaiI	CAGNNNCTG	1 cut(s)	19
CciI	TCATGA	1 cut(s)	447
CfoI	GCGC	3 cut(s)	101, 299, 431
Cfr10I	RCCGGY	5 cut(s)	44, 299, 560, 617, 716
Cfr13I	GGNCC	3 cut(s)	277, 384, 590
CseI	GACGC	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	2 cut(s)	448, 526
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	5 cut(s)	222, 228, 312, 647, 737
DpnII	GATC	5 cut(s)	220, 226, 310, 645, 735
DrdI	GACNNNNNNGTC	1 cut(s)	341
DseDI	GACNNNNNNGTC	1 cut(s)	341
EaeI	YGGCCR	4 cut(s)	64, 192, 330, 667
EagI	CGGCCG	1 cut(s)	64
Eam1104I	CTCTTC	2 cut(s)	248, 614
EarI	CTCTTC	2 cut(s)	248, 614
EciI	GGCGGA	1 cut(s)	450
Ecl136II	GAGCTC	2 cut(s)	180, 550
EclXI	CGGCCG	1 cut(s)	64
Eco130I	CCWWGG	3 cut(s)	507, 543, 673
Eco24I	GRGCYC	2 cut(s)	182, 552
Eco31I	GGTCTC	2 cut(s)	515, 626
Eco47I	GGWCC	1 cut(s)	277
Eco52I	CGGCCG	1 cut(s)	64
Eco53kI	GAGCTC	2 cut(s)	180, 550
EcoICRI	GAGCTC	2 cut(s)	180, 550
EcoO109I	RGGNCCY	1 cut(s)	384
EcoRII	CCWGG	5 cut(s)	93, 273, 285, 345, 696
EcoT14I	CCWWGG	3 cut(s)	507, 543, 673
EcoT38I	GRGCYC	2 cut(s)	182, 552
ErhI	CCWWGG	3 cut(s)	507, 543, 673
Esp3I	CGTCTC	1 cut(s)	330
FaeI	CATG	2 cut(s)	451, 529
FaiI	YATR	4 cut(s)	362, 449, 498, 527
FalI	AAGNNNNNCTT	2 cut(s)	227, 259
FaqI	GGGAC	2 cut(s)	486, 679
FatI	CATG	2 cut(s)	447, 525
Fnu4HI	GCNGC	6 cut(s)	192, 408, 427, 492, 513, 670
FokI	GGATG	2 cut(s)	269, 665
FriOI	GRGCYC	2 cut(s)	182, 552
Fsp4HI	GCNGC	6 cut(s)	192, 408, 427, 492, 513, 670
GlaI	GCGC	3 cut(s)	100, 298, 430
GluI	GCNGC	6 cut(s)	192, 408, 427, 492, 513, 670
HaeII	RGCGCY	1 cut(s)	432
HaeIII	GGCC	9 cut(s)	66, 152, 194, 332, 386, 407, 512, 591, 669
HapII	CCGG	7 cut(s)	45, 300, 482, 561, 588, 618, 717
HgaI	GACGC	1 cut(s)	292
HhaI	GCGC	3 cut(s)	101, 299, 431
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	2 cut(s)	451, 529
Hin6I	GCGC	3 cut(s)	99, 297, 429
HinP1I	GCGC	3 cut(s)	99, 297, 429
HincII	GTYRAC	2 cut(s)	292, 373
HindII	GTYRAC	2 cut(s)	292, 373
HinfI	GANTC	2 cut(s)	16, 417
HpaII	CCGG	7 cut(s)	45, 300, 482, 561, 588, 618, 717
HphI	GGTGA	2 cut(s)	34, 244
Hpy166II	GTNNAC	4 cut(s)	82, 280, 292, 373
Hpy188I	TCNGA	5 cut(s)	15, 21, 220, 707, 779
Hpy188III	TCNNGA	2 cut(s)	224, 448
Hpy8I	GTNNAC	4 cut(s)	82, 280, 292, 373
HpyAV	CCTTC	1 cut(s)	397
HpyCH4III	ACNGT	3 cut(s)	186, 578, 743
HpyCH4V	TGCA	3 cut(s)	200, 399, 725
HpyF10VI	GCNNNNNNNGC	8 cut(s)	197, 206, 392, 432, 500, 509, 666, 722
HpyF3I	CTNAG	1 cut(s)	12
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	2 cut(s)	451, 529
HspAI	GCGC	3 cut(s)	99, 297, 429
KroI	GCCGGC	2 cut(s)	299, 716
KroNI	GCCGGC	2 cut(s)	301, 718
Kzo9I	GATC	5 cut(s)	220, 226, 310, 645, 735
LmnI	GCTCC	3 cut(s)	243, 547, 589
LweI	GCATC	5 cut(s)	69, 468, 573, 643, 712
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	5 cut(s)	222, 228, 312, 647, 737
MboI	GATC	5 cut(s)	220, 226, 310, 645, 735
MboII	GAAGA	4 cut(s)	235, 450, 601, 604
MfeI	CAATTG	1 cut(s)	36
MflI	RGATCY	2 cut(s)	220, 310
MhlI	GDGCHC	4 cut(s)	182, 274, 552, 560
MluCI	AATT	6 cut(s)	36, 72, 146, 263, 441, 534
MlyI	GAGTC	1 cut(s)	411
MmeI	TCCRAC	1 cut(s)	685
MreI	CGCCGGCG	1 cut(s)	299
MroNI	GCCGGC	2 cut(s)	299, 716
MseI	TTAA	1 cut(s)	759
MspI	CCGG	7 cut(s)	45, 300, 482, 561, 588, 618, 717
MspR9I	CCNGG	7 cut(s)	95, 275, 287, 347, 483, 588, 698
MunI	CAATTG	1 cut(s)	36
MvaI	CCWGG	5 cut(s)	95, 275, 287, 347, 698
MvnI	CGCG	1 cut(s)	426
MwoI	GCNNNNNNNGC	8 cut(s)	197, 206, 392, 432, 500, 509, 666, 722
NaeI	GCCGGC	2 cut(s)	301, 718
NciI	CCSGG	2 cut(s)	483, 588
NdeII	GATC	5 cut(s)	220, 226, 310, 645, 735
NgoMIV	GCCGGC	2 cut(s)	299, 716
NlaIII	CATG	2 cut(s)	451, 529
NlaIV	GGNNCC	4 cut(s)	271, 312, 385, 559
NmeAIII	GCCGAG	1 cut(s)	280
NmuCI	GTSAC	1 cut(s)	40
PagI	TCATGA	1 cut(s)	447
PasI	CCCWGGG	1 cut(s)	94
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PdiI	GCCGGC	2 cut(s)	301, 718
PfeI	GAWTC	1 cut(s)	16
PflMI	CCANNNNNTGG	2 cut(s)	94, 286
PfoI	TCCNGGA	1 cut(s)	345
PkrI	GCNGC	6 cut(s)	193, 409, 428, 493, 514, 671
PleI	GAGTC	1 cut(s)	411
PpsI	GAGTC	1 cut(s)	411
Psp124BI	GAGCTC	2 cut(s)	182, 552
Psp6I	CCWGG	5 cut(s)	93, 273, 285, 345, 696
PspGI	CCWGG	5 cut(s)	93, 273, 285, 345, 696
PspN4I	GGNNCC	4 cut(s)	271, 312, 385, 559
PspPI	GGNCC	3 cut(s)	277, 384, 590
PstNI	CAGNNNCTG	1 cut(s)	19
PsuI	RGATCY	2 cut(s)	220, 310
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
SacI	GAGCTC	2 cut(s)	182, 552
SaqAI	TTAA	1 cut(s)	759
SatI	GCNGC	6 cut(s)	192, 408, 427, 492, 513, 670
Sau3AI	GATC	5 cut(s)	220, 226, 310, 645, 735
Sau96I	GGNCC	3 cut(s)	277, 384, 590
SchI	GAGTC	1 cut(s)	411
ScrFI	CCNGG	7 cut(s)	95, 275, 287, 347, 483, 588, 698
SduI	GDGCHC	4 cut(s)	182, 274, 552, 560
SfaNI	GCATC	5 cut(s)	69, 468, 573, 643, 712
SgrAI	CRCCGGYG	2 cut(s)	44, 299
SinI	GGWCC	1 cut(s)	277
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
Sse9I	AATT	6 cut(s)	36, 72, 146, 263, 441, 534
SsiI	CCGC	8 cut(s)	48, 191, 408, 426, 435, 492, 513, 670
SstI	GAGCTC	2 cut(s)	182, 552
StyD4I	CCNGG	7 cut(s)	93, 273, 285, 345, 481, 586, 696
StyI	CCWWGG	3 cut(s)	507, 543, 673
TaaI	ACNGT	3 cut(s)	186, 578, 743
TaqI	TCGA	1 cut(s)	246
TasI	AATT	6 cut(s)	36, 72, 146, 263, 441, 534
TauI	GCSGC	6 cut(s)	194, 410, 429, 494, 515, 672
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	1 cut(s)	759
Tru9I	TTAA	1 cut(s)	759
TscAI	CASTG	1 cut(s)	574
TseFI	GTSAC	1 cut(s)	40
Tsp45I	GTSAC	1 cut(s)	40
TspRI	CASTG	1 cut(s)	574
Van91I	CCANNNNNTGG	2 cut(s)	94, 286
VpaK11BI	GGWCC	1 cut(s)	277
XcmI	CCANNNNNNNNNTGG	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.