Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0008711

Physical Location & Seq

Genomic Coordinates Reverse (-)

6056191 .. 6057460

Gene Structure 1270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G053700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCTGCTCAGATCACCGGCCCCGAAGCCCAAAACTCCTCTTCCTCTTCCCTTCCCCTCAACGGCCGTGTGGCAATCGTCACCGGAAGCTCGCGCGGCATCGGCGGCGCCATTGCAACCCAACTCCACTCCCTCGGCGCCAAGCTGGTCATCAATTACGCCTCCTCAAATTCAACGCAAGCAGACCAATTAGCTTCCGAGCTCAACAGTTGCGAAAATACCCAATCCAAAGCCATTGCAGTTCGAGCTGACGTCTCAGATCCCGAGCAGGTAAAGCATCTCTTCGACAGAGCAGAGCAAGAATTCGAGACCCAAGCCCACATCGTCGTGAACTGCGCCGGAATTTTGAACCCAAAGCTTCCAACTTTGGCCGAGACGAGCGTGGAGGATTGGGACAAGACCTTCAGCGTGAACGCCAGAGGGGCATTTTTGGTATCTAGGGAGGCGGCGAGGAGGCTGAGACGCGGCGGCGGCGGCAGAATCATCGCGATTTCGACCTCGCTCGTCCGGGCGCTGAAGCCAGGATATGGAGCTTACGCGGCGTCGAAGGCGGCGGCGGAGACGATGACGAAGATTTTGGCGAAGGAGCTGAAGGGGAGCAGGATAACGGTGAATTGCGTGGCGCCGGGGCCCGTTGCGACGGAGTTGTTCTTCGCAGGGAAGAGTGAGGAGACGGTGAAGAAGATTGCAGAGGCTTGCCCTCTGAATCGGCTGGGGGAGCCCAAGGATGTGGCTCAGGTGGTGGGTTTCTTGGCAGGGGATGCTGGGGAGTGGGTCAACGGCCAAGTCATTAGAGTCAACGGTGGATATGTCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00061 ko00333 ko00780 ko01040 ko01100 ko01130 ko01212 map00061 map00333 map00780 map01040 map01100 map01130 map01212

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

273

Amino Acids

28.52

Weight (kDa)

8.65

Isoelectric Point (pI)

29.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13180
fragaria_vesca	FvH4_4g13260
malus_domestica	MD03G1214200.v1.1 MD10G1132600.v1.1 MD14G1002100.v1.1
prunus_persica	Prupe.8G053700_v2.0.a1 Prupe.8G053800_v2.0.a1
pyrus_communis	pycom03g16290 pycom10g11380 pycom49g00170
rosa_chinensis	RchiOBHm_Chr3g0497441
rosa_laevigata	RLG00000022461 RLG00000022463
rosa_multiflora	Rmu_co8233681.1_g000001 Rmu_sc0008086.1_g000011
rosa_roxburghii	Rroxscaffold_166G00440680 Rroxscaffold_6G00388040
rosa_rugosa	Rorug03G0293000
rosa_samantha	Rh3AG336600 Rh3BG374900 Rh3CG370800 Rh3DG371700
rosa_wichuraiana	Rw3G029590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	255
Acc36I	ACCTGC	1 cut(s)	259
AccB1I	GGYRCC	3 cut(s)	107, 137, 622
AccB7I	CCANNNNNTGG	1 cut(s)	527
AccII	CGCG	5 cut(s)	94, 96, 465, 488, 539
AclWI	GGATC	1 cut(s)	254
AcoI	YGGCCR	3 cut(s)	64, 369, 781
AcsI	RAATTY	3 cut(s)	169, 302, 342
AcuI	CTGAAG	3 cut(s)	388, 536, 611
AcyI	GRCGYC	5 cut(s)	108, 138, 252, 542, 623
AfiI	CCNNNNNNNGG	2 cut(s)	62, 527
AgsI	TTSAA	2 cut(s)	174, 349
AjnI	CCWGG	1 cut(s)	520
AluBI	AGCT	8 cut(s)	90, 145, 194, 202, 248, 358, 533, 589
AluI	AGCT	8 cut(s)	90, 145, 194, 202, 248, 358, 533, 589
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	6 cut(s)	259, 302, 368, 454, 554, 665
AlwI	GGATC	1 cut(s)	254
Ama87I	CYCGRG	1 cut(s)	263
AoxI	GGCC	5 cut(s)	19, 64, 369, 629, 781
ApaI	GGGCCC	1 cut(s)	633
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	3 cut(s)	169, 302, 342
ArsI	GACNNNNNNTTYG	2 cut(s)	559, 591
AspLEI	GCGC	6 cut(s)	96, 110, 140, 338, 514, 625
AspS9I	GGNCC	3 cut(s)	20, 629, 630
AsuC2I	CCSGG	2 cut(s)	509, 627
AsuHPI	GGTGA	4 cut(s)	7, 73, 622, 688
AvaI	CYCGRG	1 cut(s)	263
BaeGI	GKGCMC	1 cut(s)	633
BanI	GGYRCC	3 cut(s)	107, 137, 622
BanII	GRGCYC	3 cut(s)	204, 633, 723
Bbv12I	GWGCWC	1 cut(s)	204
BceAI	ACGGC	3 cut(s)	51, 79, 796
BcgI	CGANNNNNNTGC	2 cut(s)	466, 500
BciT130I	CCWGG	1 cut(s)	522
BcnI	CCSGG	2 cut(s)	509, 627
BcoDI	GTCTC	6 cut(s)	259, 302, 368, 454, 554, 665
BfaI	CTAG	1 cut(s)	438
BfoI	RGCGCY	4 cut(s)	111, 141, 515, 626
BfuAI	ACCTGC	1 cut(s)	259
BglI	GCCNNNNNGGC	1 cut(s)	422
Bme1390I	CCNGG	3 cut(s)	509, 522, 627
BmeT110I	CYCGRG	1 cut(s)	263
BmgT120I	GGNCC	3 cut(s)	20, 629, 630
BmiI	GGNNCC	7 cut(s)	22, 109, 139, 624, 630, 631, 720
BmrFI	CCNGG	3 cut(s)	509, 522, 627
BmsI	GCATC	3 cut(s)	108, 286, 751
Bpu10I	CCTNAGC	1 cut(s)	735
BpuMI	CCSGG	2 cut(s)	509, 627
BsaHI	GRCGYC	5 cut(s)	108, 138, 252, 542, 623
BsaI	GGTCTC	1 cut(s)	302
BsaJI	CCNNGG	3 cut(s)	133, 626, 723
BsaWI	WCCGGW	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 527
Bse118I	RCCGGY	1 cut(s)	17
Bse3DI	GCAATG	2 cut(s)	111, 234
BseBI	CCWGG	1 cut(s)	522
BseDI	CCNNGG	3 cut(s)	133, 626, 723
BseGI	GGATG	2 cut(s)	733, 766
BseLI	CCNNNNNNNGG	2 cut(s)	62, 527
BseMI	GCAATG	2 cut(s)	111, 234
BseMII	CTCAG	4 cut(s)	23, 270, 449, 749
BseRI	GAGGAG	4 cut(s)	28, 154, 466, 683
BseSI	GKGCMC	1 cut(s)	633
BseX3I	CGGCCG	1 cut(s)	64
BseYI	CCCAGC	2 cut(s)	712, 764
Bsh1236I	CGCG	5 cut(s)	94, 96, 465, 488, 539
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	5 cut(s)	21, 66, 371, 631, 783
BshNI	GGYRCC	3 cut(s)	107, 137, 622
BsiEI	CGRYCG	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	204
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	5 cut(s)	18, 84, 339, 508, 626
BslFI	GGGAC	1 cut(s)	407
BslI	CCNNNNNNNGG	2 cut(s)	62, 527
BsmAI	GTCTC	6 cut(s)	259, 302, 368, 454, 554, 665
BsmBI	CGTCTC	5 cut(s)	259, 368, 454, 554, 665
BsmFI	GGGAC	1 cut(s)	407
BsnI	GGCC	5 cut(s)	21, 66, 371, 631, 783
Bso31I	GGTCTC	1 cut(s)	302
BsoBI	CYCGRG	1 cut(s)	263
Bsp120I	GGGCCC	1 cut(s)	629
Bsp1286I	GDGCHC	3 cut(s)	204, 633, 723
Bsp143I	GATC	2 cut(s)	12, 259
Bsp68I	TCGCGA	1 cut(s)	488
BspANI	GGCC	5 cut(s)	21, 66, 371, 631, 783
BspCNI	CTCAG	4 cut(s)	22, 269, 450, 748
BspFNI	CGCG	5 cut(s)	94, 96, 465, 488, 539
BspLI	GGNNCC	7 cut(s)	22, 109, 139, 624, 630, 631, 720
BspMI	ACCTGC	1 cut(s)	259
BspPI	GGATC	1 cut(s)	254
BspT107I	GGYRCC	3 cut(s)	107, 137, 622
BspTNI	GGTCTC	1 cut(s)	302
BsrDI	GCAATG	2 cut(s)	111, 234
BsrFI	RCCGGY	1 cut(s)	17
BssAI	RCCGGY	1 cut(s)	17
BssECI	CCNNGG	3 cut(s)	133, 626, 723
BssMI	GATC	2 cut(s)	12, 259
BssNI	GRCGYC	5 cut(s)	108, 138, 252, 542, 623
BssT1I	CCWWGG	1 cut(s)	723
Bst2UI	CCWGG	1 cut(s)	522
Bst4CI	ACNGT	4 cut(s)	209, 610, 676, 803
Bst6I	CTCTTC	4 cut(s)	46, 52, 287, 656
BstACI	GRCGYC	5 cut(s)	108, 138, 252, 542, 623
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstC8I	GCNNGC	3 cut(s)	92, 180, 697
BstDEI	CTNAG	4 cut(s)	9, 256, 458, 735
BstF5I	GGATG	2 cut(s)	733, 766
BstFNI	CGCG	5 cut(s)	94, 96, 465, 488, 539
BstH2I	RGCGCY	4 cut(s)	111, 141, 515, 626
BstHHI	GCGC	6 cut(s)	96, 110, 140, 338, 514, 625
BstKTI	GATC	2 cut(s)	15, 262
BstMAI	GTCTC	6 cut(s)	259, 302, 368, 454, 554, 665
BstMBI	GATC	2 cut(s)	12, 259
BstMCI	CGRYCG	1 cut(s)	67
BstNI	CCWGG	1 cut(s)	522
BstSCI	CCNGG	3 cut(s)	507, 520, 625
BstSLI	GKGCMC	1 cut(s)	633
BstUI	CGCG	5 cut(s)	94, 96, 465, 488, 539
BstX2I	RGATCY	1 cut(s)	259
BstXI	CCANNNNNNTGG	1 cut(s)	730
BstYI	RGATCY	1 cut(s)	259
BstZI	CGGCCG	1 cut(s)	64
BsuRI	GGCC	5 cut(s)	21, 66, 371, 631, 783
BtgZI	GCGATG	1 cut(s)	469
BtsCI	GGATG	2 cut(s)	733, 766
BtuMI	TCGCGA	1 cut(s)	488
BveI	ACCTGC	1 cut(s)	259
Cac8I	GCNNGC	3 cut(s)	92, 180, 697
CfoI	GCGC	6 cut(s)	96, 110, 140, 338, 514, 625
Cfr10I	RCCGGY	1 cut(s)	17
Cfr13I	GGNCC	3 cut(s)	20, 629, 630
CseI	GACGC	2 cut(s)	471, 531
DdeI	CTNAG	4 cut(s)	9, 256, 458, 735
DinI	GGCGCC	3 cut(s)	109, 139, 624
DpnI	GATC	2 cut(s)	14, 261
DpnII	GATC	2 cut(s)	12, 259
EaeI	YGGCCR	3 cut(s)	64, 369, 781
EagI	CGGCCG	1 cut(s)	64
Eam1104I	CTCTTC	4 cut(s)	46, 52, 287, 656
EarI	CTCTTC	4 cut(s)	46, 52, 287, 656
EciI	GGCGGA	1 cut(s)	572
Ecl136II	GAGCTC	1 cut(s)	202
EclXI	CGGCCG	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	723
Eco24I	GRGCYC	3 cut(s)	204, 633, 723
Eco31I	GGTCTC	1 cut(s)	302
Eco52I	CGGCCG	1 cut(s)	64
Eco53kI	GAGCTC	1 cut(s)	202
Eco57I	CTGAAG	3 cut(s)	388, 536, 611
Eco88I	CYCGRG	1 cut(s)	263
EcoICRI	GAGCTC	1 cut(s)	202
EcoO109I	RGGNCCY	1 cut(s)	629
EcoRI	GAATTC	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	520
EcoT14I	CCWWGG	1 cut(s)	723
EcoT38I	GRGCYC	3 cut(s)	204, 633, 723
EgeI	GGCGCC	3 cut(s)	109, 139, 624
EheI	GGCGCC	3 cut(s)	109, 139, 624
ErhI	CCWWGG	1 cut(s)	723
Esp3I	CGTCTC	5 cut(s)	259, 368, 454, 554, 665
FaiI	YATR	2 cut(s)	528, 810
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FaqI	GGGAC	1 cut(s)	407
FokI	GGATG	2 cut(s)	740, 773
FriOI	GRGCYC	3 cut(s)	204, 633, 723
FspBI	CTAG	1 cut(s)	438
GlaI	GCGC	6 cut(s)	95, 109, 139, 337, 513, 624
GsaI	CCCAGC	2 cut(s)	716, 768
HaeII	RGCGCY	4 cut(s)	111, 141, 515, 626
HaeIII	GGCC	5 cut(s)	21, 66, 371, 631, 783
HapII	CCGG	5 cut(s)	18, 84, 339, 508, 626
HgaI	GACGC	2 cut(s)	471, 531
HhaI	GCGC	6 cut(s)	96, 110, 140, 338, 514, 625
Hin1I	GRCGYC	5 cut(s)	108, 138, 252, 542, 623
Hin6I	GCGC	6 cut(s)	94, 108, 138, 336, 512, 623
HinP1I	GCGC	6 cut(s)	94, 108, 138, 336, 512, 623
HincII	GTYRAC	2 cut(s)	778, 799
HindII	GTYRAC	2 cut(s)	778, 799
HindIII	AAGCTT	1 cut(s)	356
HinfI	GANTC	3 cut(s)	480, 706, 795
HpaII	CCGG	5 cut(s)	18, 84, 339, 508, 626
HphI	GGTGA	4 cut(s)	7, 73, 622, 688
Hpy166II	GTNNAC	4 cut(s)	331, 412, 778, 799
Hpy188I	TCNGA	5 cut(s)	12, 199, 259, 705, 818
Hpy188III	TCNNGA	4 cut(s)	263, 307, 328, 487
Hpy8I	GTNNAC	4 cut(s)	331, 412, 778, 799
Hpy99I	CGWCG	3 cut(s)	329, 547, 643
HpyAV	CCTTC	5 cut(s)	62, 412, 541, 577, 586
HpyCH4III	ACNGT	4 cut(s)	209, 610, 676, 803
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	3 cut(s)	116, 239, 689
HpyF3I	CTNAG	4 cut(s)	9, 256, 458, 735
HpySE526I	ACGT	1 cut(s)	252
Hsp92I	GRCGYC	5 cut(s)	108, 138, 252, 542, 623
HspAI	GCGC	6 cut(s)	94, 108, 138, 336, 512, 623
KasI	GGCGCC	3 cut(s)	107, 137, 622
Kzo9I	GATC	2 cut(s)	12, 259
LmnI	GCTCC	4 cut(s)	530, 586, 597, 718
LweI	GCATC	3 cut(s)	108, 286, 751
MaeI	CTAG	1 cut(s)	438
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	2 cut(s)	14, 261
MboI	GATC	2 cut(s)	12, 259
MboII	GAAGA	8 cut(s)	33, 39, 274, 583, 643, 673, 691, 694
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	3 cut(s)	204, 633, 723
MluCI	AATT	6 cut(s)	154, 169, 188, 302, 342, 613
Mly113I	GGCGCC	3 cut(s)	108, 138, 623
MlyI	GAGTC	1 cut(s)	804
MmeI	TCCRAC	1 cut(s)	386
MslI	CAYNNNNRTG	1 cut(s)	326
MspI	CCGG	5 cut(s)	18, 84, 339, 508, 626
MspR9I	CCNGG	3 cut(s)	509, 522, 627
MvaI	CCWGG	1 cut(s)	522
MvnI	CGCG	5 cut(s)	94, 96, 465, 488, 539
NarI	GGCGCC	3 cut(s)	108, 138, 623
NciI	CCSGG	2 cut(s)	509, 627
NdeII	GATC	2 cut(s)	12, 259
NlaIV	GGNNCC	7 cut(s)	22, 109, 139, 624, 630, 631, 720
NmeAIII	GCCGAG	2 cut(s)	114, 397
NmuCI	GTSAC	1 cut(s)	79
NruI	TCGCGA	1 cut(s)	488
PfeI	GAWTC	2 cut(s)	480, 706
PflMI	CCANNNNNTGG	1 cut(s)	527
PleI	GAGTC	1 cut(s)	803
PluTI	GGCGCC	3 cut(s)	111, 141, 626
PpsI	GAGTC	1 cut(s)	803
Psp124BI	GAGCTC	1 cut(s)	204
Psp6I	CCWGG	1 cut(s)	520
PspFI	CCCAGC	2 cut(s)	712, 764
PspGI	CCWGG	1 cut(s)	520
PspN4I	GGNNCC	7 cut(s)	22, 109, 139, 624, 630, 631, 720
PspOMI	GGGCCC	1 cut(s)	629
PspPI	GGNCC	3 cut(s)	20, 629, 630
PsuI	RGATCY	1 cut(s)	259
RruI	TCGCGA	1 cut(s)	488
RseI	CAYNNNNRTG	1 cut(s)	326
SacI	GAGCTC	1 cut(s)	204
Sau3AI	GATC	2 cut(s)	12, 259
Sau96I	GGNCC	3 cut(s)	20, 629, 630
SchI	GAGTC	1 cut(s)	804
ScrFI	CCNGG	3 cut(s)	509, 522, 627
SduI	GDGCHC	3 cut(s)	204, 633, 723
SfaNI	GCATC	3 cut(s)	108, 286, 751
SfoI	GGCGCC	3 cut(s)	109, 139, 624
SmiMI	CAYNNNNRTG	1 cut(s)	326
Sse9I	AATT	6 cut(s)	154, 169, 188, 302, 342, 613
SspDI	GGCGCC	3 cut(s)	107, 137, 622
SspMI	CTAG	1 cut(s)	438
SstI	GAGCTC	1 cut(s)	204
StyD4I	CCNGG	3 cut(s)	507, 520, 625
StyI	CCWWGG	1 cut(s)	723
TaaI	ACNGT	4 cut(s)	209, 610, 676, 803
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	5 cut(s)	244, 285, 306, 494, 545
TasI	AATT	6 cut(s)	154, 169, 188, 302, 342, 613
TfiI	GAWTC	2 cut(s)	480, 706
TseFI	GTSAC	1 cut(s)	79
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	79
TspGWI	ACGGA	1 cut(s)	656
Van91I	CCANNNNNTGG	1 cut(s)	527
XapI	RAATTY	3 cut(s)	169, 302, 342
XspI	CTAG	1 cut(s)	438
ZraI	GACGTC	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.