FvH4_4g13260

Short-chain type dehydrogenase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
16856653 .. 16858178
1526 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g13260.t1

Sequence Viewer

Length: 780 bp
ATGATGGCTAATCAGAATCTGAACGGGCGGGTAGCAATCGTGACCGGCGGTTCGCGTGGCATCGGCCGTGAAATAGTACTCCACCTTCACTCCCTGGGCGCAAGAGTTGTCATCAACTACGCCTCAAGTTCAAACCAGGCAGACGAACTGGCCTCCCAACTCAACACCAAGACCTCACCACAGGTATCAGCCATTGCTGCTAAAGCAGATGTCTCAGACCCAGATCAGGTAAAGCTCCTGTTCGACAAGGCCGAGCAAGAAATGGGTGCCCAGGTCCACATCCTGGTCAACTGCGCCGGCGTCTTGGATCCCAAGTACCCTTCTCTGGCCGACACCACTGTCGACGATTGGGACAACACCTTCAACATCAACACCAAAGGAGCATTCTTGATTTGCAGAGAGGCCACCAACAGACTCGCACGCGGCGCCGGCGGAAGAATCATCATGATCACCACCTCCGTCGTTGGGGGACTGATGCCTGGTTACGCCGCCTATGCTGCTTCCAAGGCCGCTGTGGAAACCATGACCAAAATAGTCGCCAAGGAGCTCAAGGGTAGCGGGATCACTGCCAACTGTGTTGCTCCGGGCCCTGTCGCCACCGAACTCTTCTTCGCCGGGAAAAGTGAGGAAACAGTTAACAGGATCACGGAAGCTTGCCCTCTCGGCCGCCTGGGTCAGCCCCACGATGTGTCCCAGGTTGTTGGGTTCTTGGCTGGAGATGCAGGGGAGTGGATCAATGGTCAGGTCCTTCGGGTTAATGGTGGAGCTCTCATCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

260

Amino Acids

27.09

Weight (kDa)

6.09

Isoelectric Point (pI)

23.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SDR PF23441 3 - 258 3.3e-09 SDR-like rossmann domain
adh_short PF00106 10 - 203 1.2e-48 short chain dehydrogenase
KR PF08659 13 - 179 6.8e-15 KR domain
adh_short_C2 PF13561 19 - 255 9.7e-56 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 338
AccB1I GGYRCC 2 cut(s) 266, 425
AccB7I CCANNNNNTGG 1 cut(s) 283
AccI GTMKAC 1 cut(s) 342
AccII CGCG 2 cut(s) 55, 423
AciI CCGC 8 cut(s) 28, 48, 423, 432, 489, 510, 558, 667
AclWI GGATC 5 cut(s) 302, 315, 569, 650, 740
AcoI YGGCCR 3 cut(s) 64, 327, 664
AcyI GRCGYC 2 cut(s) 300, 426
AdeI CACNNNGTG 1 cut(s) 688
AfaI GTAC 2 cut(s) 78, 317
AfiI CCNNNNNNNGG 4 cut(s) 226, 283, 325, 465
AgsI TTSAA 2 cut(s) 132, 364
AjnI CCWGG 7 cut(s) 93, 135, 270, 282, 478, 669, 693
AjuI GAANNNNNNNTTGG 2 cut(s) 368, 400
AluBI AGCT 4 cut(s) 235, 547, 653, 767
AluI AGCT 4 cut(s) 235, 547, 653, 767
Alw21I GWGCWC 2 cut(s) 549, 769
Alw26I GTCTC 1 cut(s) 217
AlwI GGATC 5 cut(s) 302, 315, 569, 650, 740
AlwNI CAGNNNCTG 1 cut(s) 19
AoxI GGCC 8 cut(s) 64, 150, 249, 327, 402, 507, 586, 664
ApaI GGGCCC 1 cut(s) 590
ApeKI GCWGC 2 cut(s) 197, 497
ArsI GACNNNNNNTTYG 2 cut(s) 34, 66
AspLEI GCGC 3 cut(s) 101, 296, 428
AspS9I GGNCC 4 cut(s) 274, 586, 587, 745
AsuC2I CCSGG 2 cut(s) 585, 616
AsuHPI GGTGA 2 cut(s) 168, 442
AvaII GGWCC 2 cut(s) 274, 745
BaeGI GKGCMC 2 cut(s) 271, 590
BamHI GGATCC 1 cut(s) 307
BanI GGYRCC 2 cut(s) 266, 425
BanII GRGCYC 3 cut(s) 549, 590, 769
BarI GAAGNNNNNNTAC 2 cut(s) 69, 101
Bbv12I GWGCWC 2 cut(s) 549, 769
BbvI GCAGC 2 cut(s) 184, 484
BceAI ACGGC 1 cut(s) 51
BciT130I CCWGG 7 cut(s) 95, 137, 272, 284, 480, 671, 695
BclI TGATCA 1 cut(s) 447
BcnI CCSGG 2 cut(s) 585, 616
BcoDI GTCTC 1 cut(s) 217
BfoI RGCGCY 1 cut(s) 429
BglI GCCNNNNNGGC 1 cut(s) 663
BisI GCNGC 6 cut(s) 198, 424, 489, 498, 510, 667
BlsI GCNGC 6 cut(s) 199, 425, 490, 499, 511, 668
BmcAI AGTACT 1 cut(s) 78
Bme1390I CCNGG 9 cut(s) 95, 137, 272, 284, 480, 585, 616, 671, 695
Bme18I GGWCC 2 cut(s) 274, 745
BmgT120I GGNCC 4 cut(s) 274, 586, 587, 745
BmiI GGNNCC 4 cut(s) 268, 309, 427, 588
BmrFI CCNGG 9 cut(s) 95, 137, 272, 284, 480, 585, 616, 671, 695
BmsI GCATC 3 cut(s) 69, 465, 709
BpmI CTGGAG 1 cut(s) 735
BpuEI CTTGAG 2 cut(s) 109, 533
BpuMI CCSGG 2 cut(s) 585, 616
BsaHI GRCGYC 2 cut(s) 300, 426
BsaJI CCNNGG 7 cut(s) 93, 94, 270, 504, 540, 670, 693
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 4 cut(s) 226, 283, 325, 465
Bse118I RCCGGY 3 cut(s) 44, 296, 428
Bse1I ACTGG 1 cut(s) 153
Bse3DI GCAATG 1 cut(s) 192
BseBI CCWGG 7 cut(s) 95, 137, 272, 284, 480, 671, 695
BseDI CCNNGG 7 cut(s) 93, 94, 270, 504, 540, 670, 693
BseGI GGATG 1 cut(s) 279
BseLI CCNNNNNNNGG 4 cut(s) 226, 283, 325, 465
BseMI GCAATG 1 cut(s) 192
BseMII CTCAG 1 cut(s) 228
BseNI ACTGG 1 cut(s) 153
BseSI GKGCMC 2 cut(s) 271, 590
BseX3I CGGCCG 2 cut(s) 64, 664
BseXI GCAGC 2 cut(s) 184, 484
Bsh1236I CGCG 2 cut(s) 55, 423
Bsh1285I CGRYCG 2 cut(s) 67, 667
BshFI GGCC 8 cut(s) 66, 152, 251, 329, 404, 509, 588, 666
BshNI GGYRCC 2 cut(s) 266, 425
BsiEI CGRYCG 2 cut(s) 67, 667
BsiHKAI GWGCWC 2 cut(s) 549, 769
BsiSI CCGG 5 cut(s) 45, 297, 429, 584, 615
BslFI GGGAC 3 cut(s) 365, 483, 676
BslI CCNNNNNNNGG 4 cut(s) 226, 283, 325, 465
BsmAI GTCTC 1 cut(s) 217
BsmFI GGGAC 3 cut(s) 365, 483, 676
BsmI GAATGC 1 cut(s) 383
BsnI GGCC 8 cut(s) 66, 152, 251, 329, 404, 509, 588, 666
Bsp120I GGGCCC 1 cut(s) 586
Bsp1286I GDGCHC 4 cut(s) 271, 549, 590, 769
Bsp143I GATC 6 cut(s) 223, 307, 447, 561, 642, 732
BspACI CCGC 8 cut(s) 28, 48, 423, 432, 489, 510, 558, 667
BspANI GGCC 8 cut(s) 66, 152, 251, 329, 404, 509, 588, 666
BspCNI CTCAG 1 cut(s) 227
BspFNI CGCG 2 cut(s) 55, 423
BspHI TCATGA 1 cut(s) 444
BspLI GGNNCC 4 cut(s) 268, 309, 427, 588
BspPI GGATC 5 cut(s) 302, 315, 569, 650, 740
BspT107I GGYRCC 2 cut(s) 266, 425
BsrDI GCAATG 1 cut(s) 192
BsrFI RCCGGY 3 cut(s) 44, 296, 428
BsrI ACTGG 1 cut(s) 153
BssAI RCCGGY 3 cut(s) 44, 296, 428
BssECI CCNNGG 7 cut(s) 93, 94, 270, 504, 540, 670, 693
BssMI GATC 6 cut(s) 223, 307, 447, 561, 642, 732
BssNI GRCGYC 2 cut(s) 300, 426
BssT1I CCWWGG 2 cut(s) 504, 540
Bst2UI CCWGG 7 cut(s) 95, 137, 272, 284, 480, 671, 695
Bst4CI ACNGT 3 cut(s) 340, 575, 634
Bst6I CTCTTC 1 cut(s) 611
BstACI GRCGYC 2 cut(s) 300, 426
BstC8I GCNNGC 4 cut(s) 298, 421, 430, 655
BstDEI CTNAG 1 cut(s) 214
BstF5I GGATG 1 cut(s) 279
BstFNI CGCG 2 cut(s) 55, 423
BstH2I RGCGCY 1 cut(s) 429
BstHHI GCGC 3 cut(s) 101, 296, 428
BstKTI GATC 6 cut(s) 226, 310, 450, 564, 645, 735
BstMAI GTCTC 1 cut(s) 217
BstMBI GATC 6 cut(s) 223, 307, 447, 561, 642, 732
BstMCI CGRYCG 2 cut(s) 67, 667
BstMWI GCNNNNNNNGC 9 cut(s) 197, 203, 425, 429, 494, 497, 506, 663, 719
BstNI CCWGG 7 cut(s) 95, 137, 272, 284, 480, 671, 695
BstSCI CCNGG 9 cut(s) 93, 135, 270, 282, 478, 583, 614, 669, 693
BstSLI GKGCMC 2 cut(s) 271, 590
BstUI CGCG 2 cut(s) 55, 423
BstV1I GCAGC 2 cut(s) 184, 484
BstX2I RGATCY 1 cut(s) 307
BstXI CCANNNNNNTGG 1 cut(s) 701
BstYI RGATCY 1 cut(s) 307
BstZI CGGCCG 2 cut(s) 64, 664
BsuRI GGCC 8 cut(s) 66, 152, 251, 329, 404, 509, 588, 666
BtsCI GGATG 1 cut(s) 279
BtsI GCAGTG 1 cut(s) 564
BtsIMutI CAGTG 2 cut(s) 336, 564
Cac8I GCNNGC 4 cut(s) 298, 421, 430, 655
CaiI CAGNNNCTG 1 cut(s) 19
CciI TCATGA 1 cut(s) 444
CfoI GCGC 3 cut(s) 101, 296, 428
Cfr10I RCCGGY 3 cut(s) 44, 296, 428
Cfr13I GGNCC 4 cut(s) 274, 586, 587, 745
CseI GACGC 1 cut(s) 289
Csp6I GTAC 2 cut(s) 77, 316
CviAII CATG 2 cut(s) 445, 523
CviQI GTAC 2 cut(s) 77, 316
DdeI CTNAG 1 cut(s) 214
DinI GGCGCC 1 cut(s) 427
DpnI GATC 6 cut(s) 225, 309, 449, 563, 644, 734
DpnII GATC 6 cut(s) 223, 307, 447, 561, 642, 732
DraIII CACNNNGTG 1 cut(s) 688
DrdI GACNNNNNNGTC 1 cut(s) 338
DseDI GACNNNNNNGTC 1 cut(s) 338
EaeI YGGCCR 3 cut(s) 64, 327, 664
EagI CGGCCG 2 cut(s) 64, 664
Eam1104I CTCTTC 1 cut(s) 611
EarI CTCTTC 1 cut(s) 611
EciI GGCGGA 1 cut(s) 447
Ecl136II GAGCTC 2 cut(s) 547, 767
EclXI CGGCCG 2 cut(s) 64, 664
Eco130I CCWWGG 2 cut(s) 504, 540
Eco24I GRGCYC 3 cut(s) 549, 590, 769
Eco47I GGWCC 2 cut(s) 274, 745
Eco52I CGGCCG 2 cut(s) 64, 664
Eco53kI GAGCTC 2 cut(s) 547, 767
EcoICRI GAGCTC 2 cut(s) 547, 767
EcoO109I RGGNCCY 2 cut(s) 587, 745
EcoRII CCWGG 7 cut(s) 93, 135, 270, 282, 478, 669, 693
EcoT14I CCWWGG 2 cut(s) 504, 540
EcoT38I GRGCYC 3 cut(s) 549, 590, 769
EgeI GGCGCC 1 cut(s) 427
EheI GGCGCC 1 cut(s) 427
ErhI CCWWGG 2 cut(s) 504, 540
FaeI CATG 2 cut(s) 448, 526
FaiI YATR 3 cut(s) 446, 495, 524
FaqI GGGAC 3 cut(s) 365, 483, 676
FatI CATG 2 cut(s) 444, 522
FauI CCCGC 2 cut(s) 21, 551
FbaI TGATCA 1 cut(s) 447
FblI GTMKAC 1 cut(s) 342
Fnu4HI GCNGC 6 cut(s) 198, 424, 489, 498, 510, 667
FokI GGATG 1 cut(s) 266
FriOI GRGCYC 3 cut(s) 549, 590, 769
Fsp4HI GCNGC 6 cut(s) 198, 424, 489, 498, 510, 667
GlaI GCGC 3 cut(s) 100, 295, 427
GluI GCNGC 6 cut(s) 198, 424, 489, 498, 510, 667
GsuI CTGGAG 1 cut(s) 735
HaeII RGCGCY 1 cut(s) 429
HaeIII GGCC 8 cut(s) 66, 152, 251, 329, 404, 509, 588, 666
HapII CCGG 5 cut(s) 45, 297, 429, 584, 615
HgaI GACGC 1 cut(s) 289
HhaI GCGC 3 cut(s) 101, 296, 428
Hin1I GRCGYC 2 cut(s) 300, 426
Hin1II CATG 2 cut(s) 448, 526
Hin6I GCGC 3 cut(s) 99, 294, 426
HinP1I GCGC 3 cut(s) 99, 294, 426
HincII GTYRAC 3 cut(s) 289, 343, 637
HindII GTYRAC 3 cut(s) 289, 343, 637
HindIII AAGCTT 1 cut(s) 651
HinfI GANTC 3 cut(s) 16, 414, 438
HpaI GTTAAC 1 cut(s) 637
HpaII CCGG 5 cut(s) 45, 297, 429, 584, 615
HphI GGTGA 2 cut(s) 168, 442
Hpy166II GTNNAC 4 cut(s) 277, 289, 343, 637
Hpy188I TCNGA 4 cut(s) 15, 21, 217, 779
Hpy188III TCNNGA 3 cut(s) 40, 388, 445
Hpy8I GTNNAC 4 cut(s) 277, 289, 343, 637
Hpy99I CGWCG 2 cut(s) 347, 464
HpyAV CCTTC 4 cut(s) 95, 330, 370, 758
HpyCH4III ACNGT 3 cut(s) 340, 575, 634
HpyCH4V TGCA 2 cut(s) 396, 722
HpyF10VI GCNNNNNNNGC 9 cut(s) 197, 203, 425, 429, 494, 497, 506, 663, 719
HpyF3I CTNAG 1 cut(s) 214
Hsp92I GRCGYC 2 cut(s) 300, 426
Hsp92II CATG 2 cut(s) 448, 526
HspAI GCGC 3 cut(s) 99, 294, 426
KasI GGCGCC 1 cut(s) 425
KroI GCCGGC 2 cut(s) 296, 428
KroNI GCCGGC 2 cut(s) 298, 430
Ksp22I TGATCA 1 cut(s) 447
KspAI GTTAAC 1 cut(s) 637
Kzo9I GATC 6 cut(s) 223, 307, 447, 561, 642, 732
LmnI GCTCC 5 cut(s) 240, 380, 544, 586, 764
Lsp1109I GCAGC 2 cut(s) 184, 484
LweI GCATC 3 cut(s) 69, 465, 709
MaeIII GTNAC 2 cut(s) 40, 482
MalI GATC 6 cut(s) 225, 309, 449, 563, 644, 734
MboI GATC 6 cut(s) 223, 307, 447, 561, 642, 732
MboII GAAGA 3 cut(s) 447, 598, 601
MflI RGATCY 1 cut(s) 307
MhlI GDGCHC 4 cut(s) 271, 549, 590, 769
Mly113I GGCGCC 1 cut(s) 426
MlyI GAGTC 1 cut(s) 408
MnlI CCTC 7 cut(s) 133, 163, 184, 394, 466, 619, 669
MreI CGCCGGCG 2 cut(s) 296, 428
MroNI GCCGGC 2 cut(s) 296, 428
MseI TTAA 2 cut(s) 636, 756
MspA1I CMGCKG 1 cut(s) 512
MspI CCGG 5 cut(s) 45, 297, 429, 584, 615
MspR9I CCNGG 9 cut(s) 95, 137, 272, 284, 480, 585, 616, 671, 695
Mva1269I GAATGC 1 cut(s) 383
MvaI CCWGG 7 cut(s) 95, 137, 272, 284, 480, 671, 695
MvnI CGCG 2 cut(s) 55, 423
MwoI GCNNNNNNNGC 9 cut(s) 197, 203, 425, 429, 494, 497, 506, 663, 719
NaeI GCCGGC 2 cut(s) 298, 430
NarI GGCGCC 1 cut(s) 426
NciI CCSGG 2 cut(s) 585, 616
NdeII GATC 6 cut(s) 223, 307, 447, 561, 642, 732
NgoMIV GCCGGC 2 cut(s) 296, 428
NlaIII CATG 2 cut(s) 448, 526
NlaIV GGNNCC 4 cut(s) 268, 309, 427, 588
NmeAIII GCCGAG 2 cut(s) 277, 642
NmuCI GTSAC 1 cut(s) 40
PagI TCATGA 1 cut(s) 444
PasI CCCWGGG 1 cut(s) 94
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PctI GAATGC 1 cut(s) 383
PdiI GCCGGC 2 cut(s) 298, 430
PfeI GAWTC 2 cut(s) 16, 438
PflMI CCANNNNNTGG 1 cut(s) 283
PkrI GCNGC 6 cut(s) 199, 425, 490, 499, 511, 668
PleI GAGTC 1 cut(s) 408
PluTI GGCGCC 1 cut(s) 429
PpsI GAGTC 1 cut(s) 408
PpuMI RGGWCCY 1 cut(s) 745
Psp124BI GAGCTC 2 cut(s) 549, 769
Psp5II RGGWCCY 1 cut(s) 745
Psp6I CCWGG 7 cut(s) 93, 135, 270, 282, 478, 669, 693
PspGI CCWGG 7 cut(s) 93, 135, 270, 282, 478, 669, 693
PspN4I GGNNCC 4 cut(s) 268, 309, 427, 588
PspOMI GGGCCC 1 cut(s) 586
PspPI GGNCC 4 cut(s) 274, 586, 587, 745
PspPPI RGGWCCY 1 cut(s) 745
PstNI CAGNNNCTG 1 cut(s) 19
PsuI RGATCY 1 cut(s) 307
RsaI GTAC 2 cut(s) 78, 317
RsaNI GTAC 2 cut(s) 77, 316
SacI GAGCTC 2 cut(s) 549, 769
SalI GTCGAC 1 cut(s) 341
SaqAI TTAA 2 cut(s) 636, 756
SatI GCNGC 6 cut(s) 198, 424, 489, 498, 510, 667
Sau3AI GATC 6 cut(s) 223, 307, 447, 561, 642, 732
Sau96I GGNCC 4 cut(s) 274, 586, 587, 745
ScaI AGTACT 1 cut(s) 78
SchI GAGTC 1 cut(s) 408
ScrFI CCNGG 9 cut(s) 95, 137, 272, 284, 480, 585, 616, 671, 695
SduI GDGCHC 4 cut(s) 271, 549, 590, 769
SfaNI GCATC 3 cut(s) 69, 465, 709
SfoI GGCGCC 1 cut(s) 427
SgrAI CRCCGGYG 2 cut(s) 296, 428
SinI GGWCC 2 cut(s) 274, 745
SmlI CTYRAG 2 cut(s) 124, 548
SmoI CTYRAG 2 cut(s) 124, 548
SsiI CCGC 8 cut(s) 28, 48, 423, 432, 489, 510, 558, 667
SspDI GGCGCC 1 cut(s) 425
SstI GAGCTC 2 cut(s) 549, 769
StyD4I CCNGG 9 cut(s) 93, 135, 270, 282, 478, 583, 614, 669, 693
StyI CCWWGG 2 cut(s) 504, 540
TaaI ACNGT 3 cut(s) 340, 575, 634
TaqI TCGA 2 cut(s) 243, 342
TatI WGTACW 1 cut(s) 76
TauI GCSGC 4 cut(s) 426, 491, 512, 669
TfiI GAWTC 2 cut(s) 16, 438
Tru1I TTAA 2 cut(s) 636, 756
Tru9I TTAA 2 cut(s) 636, 756
TscAI CASTG 2 cut(s) 343, 571
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 2 cut(s) 197, 497
Tsp45I GTSAC 1 cut(s) 40
TspGWI ACGGA 2 cut(s) 448, 662
TspRI CASTG 2 cut(s) 343, 571
Van91I CCANNNNNTGG 1 cut(s) 283
VpaK11BI GGWCC 2 cut(s) 274, 745
XcmI CCANNNNNNNNNTGG 1 cut(s) 511
XmiI GTMKAC 1 cut(s) 342
ZrmI AGTACT 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.