RchiOBHm_Chr3g0497441

Short-chain type dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
49385591 .. 49386740
1150 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45962

Sequence Viewer

Length: 783 bp
ATGATGGCTGCTCAGAATCTGAATGGGCGGGTGGCAATTGTCACCGGCGGTTCTCGTGGCATCGGCCGTGAAATTGCTGTCCACCTCCACTCCCTGGGCGCAAGACTTGTCATCAACTACGCTTCCAGTTCCAATCAGGCAGACGAATTGGCCTCTCACCTCAACAACAACAACAACAAGAGCTCACAGTTGGCGGCCATTGCGGTAAAAGCAGATGTTTCAGATCCAGATCAGATGAAGCTCCTCTTCGACAAAGCTGAGCAAGAATTGGGTGCCCAGGTCCACATCCTGGTCAACTGCGCCGGCGTCTTGGATCCCAAGTACCCGTCTCTGGCCGACACCTGTGTCCAGGATTGGGATAACATATTCAATGTCAACACCAAAGGGGCCTTCTTGGCTTGCAGAGAGGCCGCCAACAGACTCCCACGCGGCGCCGGCGGAAGAATTATCATGATTACCACCTCCCTTGTTGGGGGACTGATGCCGGGATACGCCGCCTATACTGCCTCCAAGGCGGCCGTGGAGACCATGACCAAAATTGTCGCCAAGGAGCTCAAGGGCACCGGCATCACTGCCAACTGTGTTGCTCCCGGCCCTGTTGCCACCGACCTCTTCTTCGCCGGTAAAAGTGAGGAGACCATCAACAGGATCAAGGATGCTTGCCCTCTTGGCCGCCTTGGTCAGCCCCACGATGTGTCCCAGGTTGTCGGATTTTTAGCCGGCGATGCAGGGGAGTGGATCAACGGTCAGGTCATTAGGGTTAATGGTGGATTTGTCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

260

Amino Acids

27.3

Weight (kDa)

6.95

Isoelectric Point (pI)

23.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SDR PF23441 7 - 258 1.2e-08 SDR-like rossmann domain
adh_short PF00106 10 - 205 9.5e-48 short chain dehydrogenase
KR PF08659 13 - 181 2.5e-12 KR domain
adh_short_C2 PF13561 19 - 258 5e-54 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 344
AccB1I GGYRCC 3 cut(s) 272, 431, 560
AccB7I CCANNNNNTGG 2 cut(s) 94, 289
AccII CGCG 1 cut(s) 429
AclWI GGATC 5 cut(s) 218, 308, 321, 656, 746
AcoI YGGCCR 5 cut(s) 64, 195, 333, 516, 670
AcyI GRCGYC 2 cut(s) 306, 432
AdeI CACNNNGTG 1 cut(s) 694
AfaI GTAC 1 cut(s) 323
AfiI CCNNNNNNNGG 7 cut(s) 94, 289, 331, 355, 471, 472, 645
AgsI TTSAA 1 cut(s) 370
AjnI CCWGG 5 cut(s) 93, 276, 288, 348, 699
AjuI GAANNNNNNNTTGG 2 cut(s) 374, 406
AluBI AGCT 4 cut(s) 183, 241, 257, 553
AluI AGCT 4 cut(s) 183, 241, 257, 553
Alw21I GWGCWC 2 cut(s) 185, 555
Alw26I GTCTC 3 cut(s) 333, 518, 629
AlwI GGATC 5 cut(s) 218, 308, 321, 656, 746
AlwNI CAGNNNCTG 1 cut(s) 19
AoxI GGCC 9 cut(s) 64, 150, 195, 333, 387, 408, 516, 592, 670
ApeKI GCWGC 1 cut(s) 8
ArsI GACNNNNNNTTYG 2 cut(s) 599, 631
AspLEI GCGC 3 cut(s) 101, 302, 434
AspS9I GGNCC 3 cut(s) 280, 387, 593
AsuC2I CCSGG 2 cut(s) 486, 591
AsuHPI GGTGA 2 cut(s) 34, 149
AvaII GGWCC 1 cut(s) 280
BaeGI GKGCMC 2 cut(s) 277, 563
BamHI GGATCC 1 cut(s) 313
BanI GGYRCC 3 cut(s) 272, 431, 560
BanII GRGCYC 2 cut(s) 185, 555
BauI CACGAG 1 cut(s) 54
Bbv12I GWGCWC 2 cut(s) 185, 555
BccI CCATC 1 cut(s) 647
BceAI ACGGC 2 cut(s) 51, 503
BciT130I CCWGG 5 cut(s) 95, 278, 290, 350, 701
BciVI GTATCC 1 cut(s) 482
BcnI CCSGG 2 cut(s) 486, 591
BcoDI GTCTC 3 cut(s) 333, 518, 629
BfoI RGCGCY 1 cut(s) 435
BfuI GTATCC 1 cut(s) 482
BglI GCCNNNNNGGC 3 cut(s) 395, 512, 669
BisI GCNGC 7 cut(s) 9, 195, 411, 430, 495, 516, 673
BlpI GCTNAGC 1 cut(s) 258
BlsI GCNGC 7 cut(s) 10, 196, 412, 431, 496, 517, 674
Bme1390I CCNGG 7 cut(s) 95, 278, 290, 350, 486, 591, 701
Bme18I GGWCC 1 cut(s) 280
BmgT120I GGNCC 3 cut(s) 280, 387, 593
BmiI GGNNCC 5 cut(s) 274, 315, 388, 433, 562
BmrFI CCNGG 7 cut(s) 95, 278, 290, 350, 486, 591, 701
BmsI GCATC 5 cut(s) 69, 471, 576, 646, 715
Bpu1102I GCTNAGC 1 cut(s) 258
BpuEI CTTGAG 1 cut(s) 539
BpuMI CCSGG 2 cut(s) 486, 591
BsaBI GATNNNNATC 1 cut(s) 228
BsaHI GRCGYC 2 cut(s) 306, 432
BsaI GGTCTC 2 cut(s) 518, 629
BsaJI CCNNGG 8 cut(s) 93, 94, 276, 510, 519, 546, 676, 699
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 7 cut(s) 94, 289, 331, 355, 471, 472, 645
Bse118I RCCGGY 6 cut(s) 44, 302, 434, 563, 620, 719
Bse1I ACTGG 1 cut(s) 126
Bse3DI GCAATG 1 cut(s) 198
Bse8I GATNNNNATC 1 cut(s) 228
BseBI CCWGG 5 cut(s) 95, 278, 290, 350, 701
BseDI CCNNGG 8 cut(s) 93, 94, 276, 510, 519, 546, 676, 699
BseGI GGATG 2 cut(s) 285, 661
BseJI GATNNNNATC 1 cut(s) 228
BseLI CCNNNNNNNGG 7 cut(s) 94, 289, 331, 355, 471, 472, 645
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 2 cut(s) 26, 249
BseNI ACTGG 1 cut(s) 126
BseRI GAGGAG 2 cut(s) 233, 647
BseSI GKGCMC 2 cut(s) 277, 563
BseX3I CGGCCG 2 cut(s) 64, 516
Bsh1236I CGCG 1 cut(s) 429
Bsh1285I CGRYCG 2 cut(s) 67, 519
BshFI GGCC 9 cut(s) 66, 152, 197, 335, 389, 410, 518, 594, 672
BshNI GGYRCC 3 cut(s) 272, 431, 560
BsiEI CGRYCG 2 cut(s) 67, 519
BsiHKAI GWGCWC 2 cut(s) 185, 555
BsiSI CCGG 8 cut(s) 45, 303, 435, 485, 564, 591, 621, 720
BslFI GGGAC 2 cut(s) 489, 682
BslI CCNNNNNNNGG 7 cut(s) 94, 289, 331, 355, 471, 472, 645
BsmAI GTCTC 3 cut(s) 333, 518, 629
BsmBI CGTCTC 1 cut(s) 333
BsmFI GGGAC 2 cut(s) 489, 682
BsnI GGCC 9 cut(s) 66, 152, 197, 335, 389, 410, 518, 594, 672
Bso31I GGTCTC 2 cut(s) 518, 629
Bsp1286I GDGCHC 4 cut(s) 185, 277, 555, 563
Bsp143I GATC 5 cut(s) 223, 229, 313, 648, 738
Bsp1720I GCTNAGC 1 cut(s) 258
BspANI GGCC 9 cut(s) 66, 152, 197, 335, 389, 410, 518, 594, 672
BspCNI CTCAG 2 cut(s) 25, 250
BspFNI CGCG 1 cut(s) 429
BspHI TCATGA 1 cut(s) 450
BspLI GGNNCC 5 cut(s) 274, 315, 388, 433, 562
BspPI GGATC 5 cut(s) 218, 308, 321, 656, 746
BspT107I GGYRCC 3 cut(s) 272, 431, 560
BspTNI GGTCTC 2 cut(s) 518, 629
BsrDI GCAATG 1 cut(s) 198
BsrFI RCCGGY 6 cut(s) 44, 302, 434, 563, 620, 719
BsrI ACTGG 1 cut(s) 126
BssAI RCCGGY 6 cut(s) 44, 302, 434, 563, 620, 719
BssECI CCNNGG 8 cut(s) 93, 94, 276, 510, 519, 546, 676, 699
BssMI GATC 5 cut(s) 223, 229, 313, 648, 738
BssNI GRCGYC 2 cut(s) 306, 432
BssSI CACGAG 1 cut(s) 54
BssT1I CCWWGG 3 cut(s) 510, 546, 676
Bst2BI CACGAG 1 cut(s) 54
Bst2UI CCWGG 5 cut(s) 95, 278, 290, 350, 701
Bst4CI ACNGT 3 cut(s) 189, 581, 746
Bst6I CTCTTC 2 cut(s) 251, 617
BstACI GRCGYC 2 cut(s) 306, 432
BstC8I GCNNGC 5 cut(s) 304, 400, 436, 661, 721
BstDEI CTNAG 2 cut(s) 12, 258
BstDSI CCRYGG 1 cut(s) 519
BstF5I GGATG 2 cut(s) 285, 661
BstFNI CGCG 1 cut(s) 429
BstH2I RGCGCY 1 cut(s) 435
BstHHI GCGC 3 cut(s) 101, 302, 434
BstKTI GATC 5 cut(s) 226, 232, 316, 651, 741
BstMAI GTCTC 3 cut(s) 333, 518, 629
BstMBI GATC 5 cut(s) 223, 229, 313, 648, 738
BstMCI CGRYCG 2 cut(s) 67, 519
BstMWI GCNNNNNNNGC 8 cut(s) 200, 209, 395, 435, 503, 512, 669, 725
BstNI CCWGG 5 cut(s) 95, 278, 290, 350, 701
BstSCI CCNGG 7 cut(s) 93, 276, 288, 348, 484, 589, 699
BstSLI GKGCMC 2 cut(s) 277, 563
BstUI CGCG 1 cut(s) 429
BstX2I RGATCY 2 cut(s) 223, 313
BstYI RGATCY 2 cut(s) 223, 313
BstZI CGGCCG 2 cut(s) 64, 516
BsuI GTATCC 1 cut(s) 482
BsuRI GGCC 9 cut(s) 66, 152, 197, 335, 389, 410, 518, 594, 672
BtgI CCRYGG 1 cut(s) 519
BtgZI GCGATG 1 cut(s) 738
BtsCI GGATG 2 cut(s) 285, 661
BtsI GCAGTG 1 cut(s) 570
BtsIMutI CAGTG 1 cut(s) 570
Cac8I GCNNGC 5 cut(s) 304, 400, 436, 661, 721
CaiI CAGNNNCTG 1 cut(s) 19
CciI TCATGA 1 cut(s) 450
CfoI GCGC 3 cut(s) 101, 302, 434
Cfr10I RCCGGY 6 cut(s) 44, 302, 434, 563, 620, 719
Cfr13I GGNCC 3 cut(s) 280, 387, 593
CseI GACGC 1 cut(s) 295
Csp6I GTAC 1 cut(s) 322
CspCI CAANNNNNGTGG 2 cut(s) 448, 483
CviAII CATG 2 cut(s) 451, 529
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 2 cut(s) 12, 258
DinI GGCGCC 1 cut(s) 433
DpnI GATC 5 cut(s) 225, 231, 315, 650, 740
DpnII GATC 5 cut(s) 223, 229, 313, 648, 738
DraIII CACNNNGTG 1 cut(s) 694
DrdI GACNNNNNNGTC 1 cut(s) 344
DseDI GACNNNNNNGTC 1 cut(s) 344
EaeI YGGCCR 5 cut(s) 64, 195, 333, 516, 670
EagI CGGCCG 2 cut(s) 64, 516
Eam1104I CTCTTC 2 cut(s) 251, 617
EarI CTCTTC 2 cut(s) 251, 617
EciI GGCGGA 1 cut(s) 453
Ecl136II GAGCTC 2 cut(s) 183, 553
EclXI CGGCCG 2 cut(s) 64, 516
Eco130I CCWWGG 3 cut(s) 510, 546, 676
Eco24I GRGCYC 2 cut(s) 185, 555
Eco31I GGTCTC 2 cut(s) 518, 629
Eco47I GGWCC 1 cut(s) 280
Eco52I CGGCCG 2 cut(s) 64, 516
Eco53kI GAGCTC 2 cut(s) 183, 553
EcoICRI GAGCTC 2 cut(s) 183, 553
EcoO109I RGGNCCY 1 cut(s) 387
EcoRII CCWGG 5 cut(s) 93, 276, 288, 348, 699
EcoT14I CCWWGG 3 cut(s) 510, 546, 676
EcoT38I GRGCYC 2 cut(s) 185, 555
EgeI GGCGCC 1 cut(s) 433
EheI GGCGCC 1 cut(s) 433
ErhI CCWWGG 3 cut(s) 510, 546, 676
Esp3I CGTCTC 1 cut(s) 333
FaeI CATG 2 cut(s) 454, 532
FaiI YATR 4 cut(s) 365, 452, 501, 530
FalI AAGNNNNNCTT 2 cut(s) 230, 262
FaqI GGGAC 2 cut(s) 489, 682
FatI CATG 2 cut(s) 450, 528
FauI CCCGC 1 cut(s) 21
Fnu4HI GCNGC 7 cut(s) 9, 195, 411, 430, 495, 516, 673
FokI GGATG 2 cut(s) 272, 668
FriOI GRGCYC 2 cut(s) 185, 555
Fsp4HI GCNGC 7 cut(s) 9, 195, 411, 430, 495, 516, 673
GlaI GCGC 3 cut(s) 100, 301, 433
GluI GCNGC 7 cut(s) 9, 195, 411, 430, 495, 516, 673
HaeII RGCGCY 1 cut(s) 435
HaeIII GGCC 9 cut(s) 66, 152, 197, 335, 389, 410, 518, 594, 672
HapII CCGG 8 cut(s) 45, 303, 435, 485, 564, 591, 621, 720
HgaI GACGC 1 cut(s) 295
HhaI GCGC 3 cut(s) 101, 302, 434
Hin1I GRCGYC 2 cut(s) 306, 432
Hin1II CATG 2 cut(s) 454, 532
Hin6I GCGC 3 cut(s) 99, 300, 432
HinP1I GCGC 3 cut(s) 99, 300, 432
HincII GTYRAC 2 cut(s) 295, 376
HindII GTYRAC 2 cut(s) 295, 376
HinfI GANTC 2 cut(s) 16, 420
HpaII CCGG 8 cut(s) 45, 303, 435, 485, 564, 591, 621, 720
HphI GGTGA 2 cut(s) 34, 149
Hpy166II GTNNAC 4 cut(s) 82, 283, 295, 376
Hpy188I TCNGA 6 cut(s) 15, 21, 223, 234, 710, 782
Hpy188III TCNNGA 2 cut(s) 227, 451
Hpy8I GTNNAC 4 cut(s) 82, 283, 295, 376
HpyAV CCTTC 1 cut(s) 400
HpyCH4III ACNGT 3 cut(s) 189, 581, 746
HpyCH4V TGCA 2 cut(s) 402, 728
HpyF10VI GCNNNNNNNGC 8 cut(s) 200, 209, 395, 435, 503, 512, 669, 725
HpyF3I CTNAG 2 cut(s) 12, 258
Hsp92I GRCGYC 2 cut(s) 306, 432
Hsp92II CATG 2 cut(s) 454, 532
HspAI GCGC 3 cut(s) 99, 300, 432
KasI GGCGCC 1 cut(s) 431
KroI GCCGGC 3 cut(s) 302, 434, 719
KroNI GCCGGC 3 cut(s) 304, 436, 721
Kzo9I GATC 5 cut(s) 223, 229, 313, 648, 738
LmnI GCTCC 3 cut(s) 246, 550, 592
LweI GCATC 5 cut(s) 69, 471, 576, 646, 715
MaeIII GTNAC 1 cut(s) 40
MalI GATC 5 cut(s) 225, 231, 315, 650, 740
MboI GATC 5 cut(s) 223, 229, 313, 648, 738
MboII GAAGA 4 cut(s) 238, 453, 604, 607
MfeI CAATTG 1 cut(s) 36
MflI RGATCY 2 cut(s) 223, 313
MhlI GDGCHC 4 cut(s) 185, 277, 555, 563
MluCI AATT 6 cut(s) 36, 72, 146, 266, 444, 537
Mly113I GGCGCC 1 cut(s) 432
MlyI GAGTC 1 cut(s) 414
MmeI TCCRAC 1 cut(s) 688
MreI CGCCGGCG 2 cut(s) 302, 434
MroNI GCCGGC 3 cut(s) 302, 434, 719
MseI TTAA 1 cut(s) 762
MspI CCGG 8 cut(s) 45, 303, 435, 485, 564, 591, 621, 720
MspR9I CCNGG 7 cut(s) 95, 278, 290, 350, 486, 591, 701
MunI CAATTG 1 cut(s) 36
MvaI CCWGG 5 cut(s) 95, 278, 290, 350, 701
MvnI CGCG 1 cut(s) 429
MwoI GCNNNNNNNGC 8 cut(s) 200, 209, 395, 435, 503, 512, 669, 725
NaeI GCCGGC 3 cut(s) 304, 436, 721
NarI GGCGCC 1 cut(s) 432
NciI CCSGG 2 cut(s) 486, 591
NdeII GATC 5 cut(s) 223, 229, 313, 648, 738
NgoMIV GCCGGC 3 cut(s) 302, 434, 719
NlaIII CATG 2 cut(s) 454, 532
NlaIV GGNNCC 5 cut(s) 274, 315, 388, 433, 562
NmuCI GTSAC 1 cut(s) 40
PagI TCATGA 1 cut(s) 450
PasI CCCWGGG 1 cut(s) 94
PdiI GCCGGC 3 cut(s) 304, 436, 721
PfeI GAWTC 1 cut(s) 16
PflMI CCANNNNNTGG 2 cut(s) 94, 289
PfoI TCCNGGA 1 cut(s) 348
PkrI GCNGC 7 cut(s) 10, 196, 412, 431, 496, 517, 674
PleI GAGTC 1 cut(s) 414
PluTI GGCGCC 1 cut(s) 435
PpsI GAGTC 1 cut(s) 414
Psp124BI GAGCTC 2 cut(s) 185, 555
Psp6I CCWGG 5 cut(s) 93, 276, 288, 348, 699
PspGI CCWGG 5 cut(s) 93, 276, 288, 348, 699
PspN4I GGNNCC 5 cut(s) 274, 315, 388, 433, 562
PspPI GGNCC 3 cut(s) 280, 387, 593
PstNI CAGNNNCTG 1 cut(s) 19
PsuI RGATCY 2 cut(s) 223, 313
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
SacI GAGCTC 2 cut(s) 185, 555
SaqAI TTAA 1 cut(s) 762
SatI GCNGC 7 cut(s) 9, 195, 411, 430, 495, 516, 673
Sau3AI GATC 5 cut(s) 223, 229, 313, 648, 738
Sau96I GGNCC 3 cut(s) 280, 387, 593
SchI GAGTC 1 cut(s) 414
ScrFI CCNGG 7 cut(s) 95, 278, 290, 350, 486, 591, 701
SduI GDGCHC 4 cut(s) 185, 277, 555, 563
SfaNI GCATC 5 cut(s) 69, 471, 576, 646, 715
SfoI GGCGCC 1 cut(s) 433
SgrAI CRCCGGYG 3 cut(s) 44, 302, 434
SinI GGWCC 1 cut(s) 280
SmlI CTYRAG 1 cut(s) 554
SmoI CTYRAG 1 cut(s) 554
Sse9I AATT 6 cut(s) 36, 72, 146, 266, 444, 537
SspDI GGCGCC 1 cut(s) 431
SstI GAGCTC 2 cut(s) 185, 555
StyD4I CCNGG 7 cut(s) 93, 276, 288, 348, 484, 589, 699
StyI CCWWGG 3 cut(s) 510, 546, 676
TaaI ACNGT 3 cut(s) 189, 581, 746
TaqI TCGA 1 cut(s) 249
TasI AATT 6 cut(s) 36, 72, 146, 266, 444, 537
TauI GCSGC 6 cut(s) 197, 413, 432, 497, 518, 675
TfiI GAWTC 1 cut(s) 16
Tru1I TTAA 1 cut(s) 762
Tru9I TTAA 1 cut(s) 762
TscAI CASTG 1 cut(s) 577
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 1 cut(s) 8
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 1 cut(s) 251
TspRI CASTG 1 cut(s) 577
Van91I CCANNNNNTGG 2 cut(s) 94, 289
VpaK11BI GGWCC 1 cut(s) 280
XcmI CCANNNNNNNNNTGG 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.