Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0008711

Physical Location & Seq

Genomic Coordinates Reverse (-)

6086989 .. 6088285

Gene Structure 1297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G053800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCTGCTCAAATCACCAGCACTGAAGCCCAAAACTCCTCTTCCTCTTCCTCTTCCCTTCCCCTCAACGGCCGTGTGGCAATCGTCACCGGCGGCTCGCGAGGCATCGGCCGCGCCATTGCAACCCACCTCCACTCCCTCGGCGCCAAGCTGGTCATCAATTACGCCTCCTCAAACTCAACGCAAGCAGACCAATTAGCTTCCGAGCTCAACAGTTGCGAAAATACCCAATCCAAAGCCATTGCAGTTCGAGCCGACGTCTCAGATCCCGAGCAGGTAAAGCATCTCTTCGACAGAGCAGAGCAAGAATTCGAGACCCAAGCCCACATCGTCGTGAACTGCGCCGGAATTTTGAACCCAAAGTATCCAACTTTAGCCGAGACGAGCGTGGAGGATTGGGACAAGACCTTCAGCGTGAACGCCAGAGGGGCATTTTTGGTATCTAGGGAGGCGGCGAGGAGGCTGAGACGCGGCGGCGGCGGCAGAATCATCGCGATTTCGACGTCTCTCGTTGGGGGGCTGATGCCAGGATATGGAGCCTACGCGGCGTCGAAGGCGGCGGCGGAGACGATGACGAAGATTTTGGCGAAGGAGCTGAAGGGGAGCGGGATAACGGCGAATTGCGTGGCGCCGGGGCCGGTTGCGACGGAGTTGTTCTTCGCAGGGAAGAGTGAGGAGACGGTGAAGAAGATTGCAGAGGCTTGCCCTCTGAATCGGCTGGGGGAGCCCAAGGATGTGGCTCAGGTGGTGGGTTTTTTGGCAGGGGATGCCGCGGAGTGGGTCAACGGCCAAGTCATTAGAGTTAACGGTGGATATGTCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00061 ko00333 ko00780 ko01040 ko01100 ko01130 ko01212 map00061 map00333 map00780 map01040 map01100 map01130 map01212

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

275

Amino Acids

28.63

Weight (kDa)

7.68

Isoelectric Point (pI)

32.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13180
fragaria_vesca	FvH4_4g13260
malus_domestica	MD03G1214200.v1.1 MD10G1132600.v1.1 MD14G1002100.v1.1
prunus_persica	Prupe.8G053700_v2.0.a1 Prupe.8G053800_v2.0.a1
pyrus_communis	pycom03g16290 pycom10g11380 pycom49g00170
rosa_chinensis	RchiOBHm_Chr3g0497441
rosa_laevigata	RLG00000022461 RLG00000022463
rosa_multiflora	Rmu_co8233681.1_g000001 Rmu_sc0008086.1_g000011
rosa_roxburghii	Rroxscaffold_166G00440680 Rroxscaffold_6G00388040
rosa_rugosa	Rorug03G0293000
rosa_samantha	Rh3AG336600 Rh3BG374900 Rh3CG370800 Rh3DG371700
rosa_wichuraiana	Rw3G029590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	261, 506
Acc36I	ACCTGC	1 cut(s)	265
AccB1I	GGYRCC	2 cut(s)	143, 628
AccB7I	CCANNNNNTGG	1 cut(s)	533
AccBSI	CCGCTC	1 cut(s)	606
AccII	CGCG	6 cut(s)	100, 114, 471, 494, 545, 773
AclWI	GGATC	1 cut(s)	260
AcoI	YGGCCR	3 cut(s)	70, 109, 787
AcsI	RAATTY	2 cut(s)	308, 348
AcuI	CTGAAG	3 cut(s)	45, 394, 617
AcyI	GRCGYC	5 cut(s)	144, 258, 503, 548, 629
AfiI	CCNNNNNNNGG	3 cut(s)	68, 533, 777
AgsI	TTSAA	1 cut(s)	355
AjnI	CCWGG	1 cut(s)	526
AluBI	AGCT	4 cut(s)	151, 200, 208, 595
AluI	AGCT	4 cut(s)	151, 200, 208, 595
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	7 cut(s)	265, 308, 374, 460, 510, 560, 671
AlwI	GGATC	1 cut(s)	260
Ama87I	CYCGRG	1 cut(s)	269
AoxI	GGCC	4 cut(s)	70, 109, 635, 787
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	2 cut(s)	308, 348
ArsI	GACNNNNNNTTYG	2 cut(s)	565, 597
AspLEI	GCGC	4 cut(s)	116, 146, 344, 631
AspS9I	GGNCC	1 cut(s)	635
AsuC2I	CCSGG	1 cut(s)	633
AsuHPI	GGTGA	3 cut(s)	7, 79, 694
AvaI	CYCGRG	1 cut(s)	269
BanI	GGYRCC	2 cut(s)	143, 628
BanII	GRGCYC	2 cut(s)	210, 729
Bbv12I	GWGCWC	1 cut(s)	210
BceAI	ACGGC	4 cut(s)	57, 85, 630, 802
BcgI	CGANNNNNNTGC	2 cut(s)	472, 506
BciT130I	CCWGG	1 cut(s)	528
BciVI	GTATCC	1 cut(s)	375
BcnI	CCSGG	1 cut(s)	633
BcoDI	GTCTC	7 cut(s)	265, 308, 374, 460, 510, 560, 671
BfaI	CTAG	1 cut(s)	444
BfoI	RGCGCY	2 cut(s)	147, 632
BfuAI	ACCTGC	1 cut(s)	265
BfuI	GTATCC	1 cut(s)	375
BglI	GCCNNNNNGGC	2 cut(s)	428, 545
Bme1390I	CCNGG	2 cut(s)	528, 633
BmeT110I	CYCGRG	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	635
BmiI	GGNNCC	5 cut(s)	145, 538, 630, 636, 726
BmrFI	CCNGG	2 cut(s)	528, 633
BmsI	GCATC	4 cut(s)	114, 292, 513, 757
Bpu10I	CCTNAGC	1 cut(s)	741
BpuMI	CCSGG	1 cut(s)	633
BsaHI	GRCGYC	5 cut(s)	144, 258, 503, 548, 629
BsaI	GGTCTC	1 cut(s)	308
BsaJI	CCNNGG	4 cut(s)	139, 632, 729, 771
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 533, 777
Bse118I	RCCGGY	2 cut(s)	89, 637
Bse3DI	GCAATG	2 cut(s)	117, 240
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	4 cut(s)	139, 632, 729, 771
BseGI	GGATG	2 cut(s)	739, 772
BseLI	CCNNNNNNNGG	3 cut(s)	68, 533, 777
BseMI	GCAATG	2 cut(s)	117, 240
BseMII	CTCAG	3 cut(s)	276, 455, 755
BseRI	GAGGAG	4 cut(s)	28, 160, 472, 689
BseX3I	CGGCCG	2 cut(s)	70, 109
BseYI	CCCAGC	1 cut(s)	718
Bsh1236I	CGCG	6 cut(s)	100, 114, 471, 494, 545, 773
Bsh1285I	CGRYCG	2 cut(s)	73, 112
BshFI	GGCC	4 cut(s)	72, 111, 637, 789
BshNI	GGYRCC	2 cut(s)	143, 628
BsiEI	CGRYCG	2 cut(s)	73, 112
BsiHKAI	GWGCWC	1 cut(s)	210
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	4 cut(s)	90, 345, 632, 638
BslFI	GGGAC	1 cut(s)	413
BslI	CCNNNNNNNGG	3 cut(s)	68, 533, 777
BsmAI	GTCTC	7 cut(s)	265, 308, 374, 460, 510, 560, 671
BsmBI	CGTCTC	6 cut(s)	265, 374, 460, 510, 560, 671
BsmFI	GGGAC	1 cut(s)	413
BsnI	GGCC	4 cut(s)	72, 111, 637, 789
Bso31I	GGTCTC	1 cut(s)	308
BsoBI	CYCGRG	1 cut(s)	269
Bsp1286I	GDGCHC	2 cut(s)	210, 729
Bsp143I	GATC	1 cut(s)	265
Bsp68I	TCGCGA	2 cut(s)	100, 494
BspANI	GGCC	4 cut(s)	72, 111, 637, 789
BspCNI	CTCAG	3 cut(s)	275, 456, 754
BspFNI	CGCG	6 cut(s)	100, 114, 471, 494, 545, 773
BspLI	GGNNCC	5 cut(s)	145, 538, 630, 636, 726
BspMI	ACCTGC	1 cut(s)	265
BspPI	GGATC	1 cut(s)	260
BspT107I	GGYRCC	2 cut(s)	143, 628
BspTNI	GGTCTC	1 cut(s)	308
BsrBI	CCGCTC	1 cut(s)	606
BsrDI	GCAATG	2 cut(s)	117, 240
BsrFI	RCCGGY	2 cut(s)	89, 637
BssAI	RCCGGY	2 cut(s)	89, 637
BssECI	CCNNGG	4 cut(s)	139, 632, 729, 771
BssMI	GATC	1 cut(s)	265
BssNI	GRCGYC	5 cut(s)	144, 258, 503, 548, 629
BssT1I	CCWWGG	1 cut(s)	729
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	3 cut(s)	215, 682, 809
Bst6I	CTCTTC	5 cut(s)	46, 52, 58, 293, 662
BstACI	GRCGYC	5 cut(s)	144, 258, 503, 548, 629
BstAPI	GCANNNNNTGC	1 cut(s)	767
BstC8I	GCNNGC	3 cut(s)	98, 186, 703
BstDEI	CTNAG	3 cut(s)	262, 464, 741
BstDSI	CCRYGG	1 cut(s)	771
BstF5I	GGATG	2 cut(s)	739, 772
BstFNI	CGCG	6 cut(s)	100, 114, 471, 494, 545, 773
BstH2I	RGCGCY	2 cut(s)	147, 632
BstHHI	GCGC	4 cut(s)	116, 146, 344, 631
BstKTI	GATC	1 cut(s)	268
BstMAI	GTCTC	7 cut(s)	265, 308, 374, 460, 510, 560, 671
BstMBI	GATC	1 cut(s)	265
BstMCI	CGRYCG	2 cut(s)	73, 112
BstNI	CCWGG	1 cut(s)	528
BstSCI	CCNGG	2 cut(s)	526, 631
BstUI	CGCG	6 cut(s)	100, 114, 471, 494, 545, 773
BstX2I	RGATCY	1 cut(s)	265
BstXI	CCANNNNNNTGG	1 cut(s)	736
BstYI	RGATCY	1 cut(s)	265
BstZI	CGGCCG	2 cut(s)	70, 109
BsuI	GTATCC	1 cut(s)	375
BsuRI	GGCC	4 cut(s)	72, 111, 637, 789
BtgI	CCRYGG	1 cut(s)	771
BtgZI	GCGATG	1 cut(s)	475
BtsCI	GGATG	2 cut(s)	739, 772
BtsIMutI	CAGTG	1 cut(s)	21
BtuMI	TCGCGA	2 cut(s)	100, 494
BveI	ACCTGC	1 cut(s)	265
Cac8I	GCNNGC	3 cut(s)	98, 186, 703
CfoI	GCGC	4 cut(s)	116, 146, 344, 631
Cfr10I	RCCGGY	2 cut(s)	89, 637
Cfr13I	GGNCC	1 cut(s)	635
Cfr42I	CCGCGG	1 cut(s)	774
CseI	GACGC	2 cut(s)	477, 537
DdeI	CTNAG	3 cut(s)	262, 464, 741
DinI	GGCGCC	2 cut(s)	145, 630
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
EaeI	YGGCCR	3 cut(s)	70, 109, 787
EagI	CGGCCG	2 cut(s)	70, 109
Eam1104I	CTCTTC	5 cut(s)	46, 52, 58, 293, 662
EarI	CTCTTC	5 cut(s)	46, 52, 58, 293, 662
EciI	GGCGGA	1 cut(s)	578
Ecl136II	GAGCTC	1 cut(s)	208
EclXI	CGGCCG	2 cut(s)	70, 109
Eco130I	CCWWGG	1 cut(s)	729
Eco24I	GRGCYC	2 cut(s)	210, 729
Eco31I	GGTCTC	1 cut(s)	308
Eco52I	CGGCCG	2 cut(s)	70, 109
Eco53kI	GAGCTC	1 cut(s)	208
Eco57I	CTGAAG	3 cut(s)	45, 394, 617
Eco88I	CYCGRG	1 cut(s)	269
EcoICRI	GAGCTC	1 cut(s)	208
EcoRI	GAATTC	1 cut(s)	308
EcoRII	CCWGG	1 cut(s)	526
EcoT14I	CCWWGG	1 cut(s)	729
EcoT38I	GRGCYC	2 cut(s)	210, 729
EgeI	GGCGCC	2 cut(s)	145, 630
EheI	GGCGCC	2 cut(s)	145, 630
ErhI	CCWWGG	1 cut(s)	729
Esp3I	CGTCTC	6 cut(s)	265, 374, 460, 510, 560, 671
FaiI	YATR	2 cut(s)	534, 816
FalI	AAGNNNNNCTT	2 cut(s)	272, 304
FaqI	GGGAC	1 cut(s)	413
FauI	CCCGC	1 cut(s)	599
FokI	GGATG	2 cut(s)	746, 779
FriOI	GRGCYC	2 cut(s)	210, 729
FspBI	CTAG	1 cut(s)	444
GlaI	GCGC	4 cut(s)	115, 145, 343, 630
GsaI	CCCAGC	1 cut(s)	722
HaeII	RGCGCY	2 cut(s)	147, 632
HaeIII	GGCC	4 cut(s)	72, 111, 637, 789
HapII	CCGG	4 cut(s)	90, 345, 632, 638
HgaI	GACGC	2 cut(s)	477, 537
HhaI	GCGC	4 cut(s)	116, 146, 344, 631
Hin1I	GRCGYC	5 cut(s)	144, 258, 503, 548, 629
Hin6I	GCGC	4 cut(s)	114, 144, 342, 629
HinP1I	GCGC	4 cut(s)	114, 144, 342, 629
HincII	GTYRAC	2 cut(s)	784, 805
HindII	GTYRAC	2 cut(s)	784, 805
HinfI	GANTC	2 cut(s)	486, 712
HpaI	GTTAAC	1 cut(s)	805
HpaII	CCGG	4 cut(s)	90, 345, 632, 638
HphI	GGTGA	3 cut(s)	7, 79, 694
Hpy166II	GTNNAC	4 cut(s)	337, 418, 784, 805
Hpy188I	TCNGA	4 cut(s)	205, 265, 711, 824
Hpy188III	TCNNGA	5 cut(s)	99, 269, 313, 334, 493
Hpy8I	GTNNAC	4 cut(s)	337, 418, 784, 805
Hpy99I	CGWCG	5 cut(s)	260, 335, 505, 553, 649
HpyAV	CCTTC	5 cut(s)	68, 418, 547, 583, 592
HpyCH4III	ACNGT	3 cut(s)	215, 682, 809
HpyCH4IV	ACGT	2 cut(s)	258, 503
HpyCH4V	TGCA	3 cut(s)	122, 245, 695
HpyF3I	CTNAG	3 cut(s)	262, 464, 741
HpySE526I	ACGT	2 cut(s)	258, 503
Hsp92I	GRCGYC	5 cut(s)	144, 258, 503, 548, 629
HspAI	GCGC	4 cut(s)	114, 144, 342, 629
KasI	GGCGCC	2 cut(s)	143, 628
KspAI	GTTAAC	1 cut(s)	805
KspI	CCGCGG	1 cut(s)	774
Kzo9I	GATC	1 cut(s)	265
LmnI	GCTCC	4 cut(s)	536, 592, 603, 724
LweI	GCATC	4 cut(s)	114, 292, 513, 757
MaeI	CTAG	1 cut(s)	444
MaeII	ACGT	2 cut(s)	258, 503
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	1 cut(s)	267
MbiI	CCGCTC	1 cut(s)	606
MboI	GATC	1 cut(s)	265
MboII	GAAGA	9 cut(s)	33, 39, 45, 280, 589, 649, 679, 697, 700
MflI	RGATCY	1 cut(s)	265
MhlI	GDGCHC	2 cut(s)	210, 729
MluCI	AATT	5 cut(s)	160, 194, 308, 348, 619
Mly113I	GGCGCC	2 cut(s)	144, 629
MmeI	TCCRAC	1 cut(s)	392
MseI	TTAA	1 cut(s)	804
MslI	CAYNNNNRTG	1 cut(s)	332
MspA1I	CMGCKG	1 cut(s)	773
MspI	CCGG	4 cut(s)	90, 345, 632, 638
MspR9I	CCNGG	2 cut(s)	528, 633
MvaI	CCWGG	1 cut(s)	528
MvnI	CGCG	6 cut(s)	100, 114, 471, 494, 545, 773
NarI	GGCGCC	2 cut(s)	144, 629
NciI	CCSGG	1 cut(s)	633
NdeII	GATC	1 cut(s)	265
NlaIV	GGNNCC	5 cut(s)	145, 538, 630, 636, 726
NmeAIII	GCCGAG	2 cut(s)	120, 403
NmuCI	GTSAC	1 cut(s)	85
NruI	TCGCGA	2 cut(s)	100, 494
PfeI	GAWTC	2 cut(s)	486, 712
PflMI	CCANNNNNTGG	1 cut(s)	533
PluTI	GGCGCC	2 cut(s)	147, 632
Psp124BI	GAGCTC	1 cut(s)	210
Psp6I	CCWGG	1 cut(s)	526
PspFI	CCCAGC	1 cut(s)	718
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	5 cut(s)	145, 538, 630, 636, 726
PspPI	GGNCC	1 cut(s)	635
PsuI	RGATCY	1 cut(s)	265
RruI	TCGCGA	2 cut(s)	100, 494
RseI	CAYNNNNRTG	1 cut(s)	332
SacI	GAGCTC	1 cut(s)	210
SacII	CCGCGG	1 cut(s)	774
SaqAI	TTAA	1 cut(s)	804
Sau3AI	GATC	1 cut(s)	265
Sau96I	GGNCC	1 cut(s)	635
ScrFI	CCNGG	2 cut(s)	528, 633
SduI	GDGCHC	2 cut(s)	210, 729
SfaNI	GCATC	4 cut(s)	114, 292, 513, 757
SfoI	GGCGCC	2 cut(s)	145, 630
Sfr303I	CCGCGG	1 cut(s)	774
SgrAI	CRCCGGYG	1 cut(s)	89
SgrBI	CCGCGG	1 cut(s)	774
SmiMI	CAYNNNNRTG	1 cut(s)	332
Sse9I	AATT	5 cut(s)	160, 194, 308, 348, 619
SspDI	GGCGCC	2 cut(s)	143, 628
SspMI	CTAG	1 cut(s)	444
SstI	GAGCTC	1 cut(s)	210
StyD4I	CCNGG	2 cut(s)	526, 631
StyI	CCWWGG	1 cut(s)	729
TaaI	ACNGT	3 cut(s)	215, 682, 809
TaiI	ACGT	2 cut(s)	261, 506
TaqI	TCGA	5 cut(s)	250, 291, 312, 500, 551
TasI	AATT	5 cut(s)	160, 194, 308, 348, 619
TfiI	GAWTC	2 cut(s)	486, 712
Tru1I	TTAA	1 cut(s)	804
Tru9I	TTAA	1 cut(s)	804
TscAI	CASTG	1 cut(s)	28
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	85
TspGWI	ACGGA	1 cut(s)	662
TspRI	CASTG	1 cut(s)	28
Van91I	CCANNNNNTGG	1 cut(s)	533
XapI	RAATTY	2 cut(s)	308, 348
XspI	CTAG	1 cut(s)	444
ZraI	GACGTC	2 cut(s)	259, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.