Rh3BG374900

Short-chain type dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0008711
Physical Location & Seq
Reverse (-)
47603292 .. 47604601
1310 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG374900.1

Sequence Viewer

Length: 786 bp
ATGATGGCTACTCAGAATCTGAATGGGCGGGTGGCAATTGTCACCGGCGGTTCTCGTGGCATCGGCCGTGAAATTGCTGTCCACCTCCACTCCCTGGGCGCAAGACTTGTCATCAACTACGCTTCCAGTTCCAAGCAGGCAGACGAATTGGCCTCCCACCTCAACAACAACAACAACAACAAGAGCTCACAGTTGGCGGCCATTGCAGTAAAAGCAGATGTTTCAGATCCAGATCAGGTGAAGCTCCTCTTCGACAAAGCCGAGCAAGAATTGGGTGCCCAGGTCCACATCCTGGTCAACTGCGCCGGCGTCTTGGATCCCAAGTACCCGTCTCTGGCCGACACCTGTGTCCAGGATTGGGATAACATATTCAATGTCAACACCAAAGGGGCCTTCTTGGCTTGCAGAGAGGCCGCCAACAGACTCCCACGCGGCCCCGGCGGAAGAATTATCATGATTACCACCTCCGTTGTTGGGGGACTGATGCCCGGATACGCCGCCTATGCTGCCTCCAAGGCCGCCGTGGAGACCATGACCAAAATTGTCGCCAAGGAGCTCAAGGGCACCGGCATCACTGCCAACTGTGTTGCTCCCGGCCCTGTTGCCACCGACCTCTTCTTCGCCGGTAAAAGTGAGGAGACCATCAACAGGATCAAGGATGCTTGCCCTCTTGGCCGCCTTGGTCAACCCCAAGATGTGTCCCAGGTTGTTGGATTTTTAGCCGGCGATGCAGGGGAGTGGATCAACGGTCAGGTTATTAGGGTTAATGGTGGATTTGTCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00061 ko00333 ko00780 ko01040 ko01100 ko01130 ko01212 map00061 map00333 map00780 map01040 map01100 map01130 map01212
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

261

Amino Acids

27.4

Weight (kDa)

7.64

Isoelectric Point (pI)

26.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 10 - 206 1.2e-47 short chain dehydrogenase
SDR PF23441 10 - 259 3e-11 SDR-like rossmann domain
KR PF08659 13 - 190 1.2e-12 KR domain
adh_short_C2 PF13561 19 - 259 1.3e-54 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 347
AccB1I GGYRCC 2 cut(s) 275, 563
AccB7I CCANNNNNTGG 2 cut(s) 94, 292
AccII CGCG 1 cut(s) 432
AciI CCGC 9 cut(s) 28, 48, 197, 414, 432, 441, 498, 519, 676
AclWI GGATC 5 cut(s) 221, 311, 324, 659, 749
AcoI YGGCCR 4 cut(s) 64, 198, 336, 673
AcyI GRCGYC 1 cut(s) 309
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 6 cut(s) 94, 292, 334, 358, 474, 648
AgsI TTSAA 1 cut(s) 373
AjnI CCWGG 5 cut(s) 93, 279, 291, 351, 702
AjuI GAANNNNNNNTTGG 2 cut(s) 377, 409
AluBI AGCT 3 cut(s) 186, 244, 556
AluI AGCT 3 cut(s) 186, 244, 556
Alw21I GWGCWC 2 cut(s) 188, 558
Alw26I GTCTC 3 cut(s) 336, 521, 632
AlwI GGATC 5 cut(s) 221, 311, 324, 659, 749
AlwNI CAGNNNCTG 1 cut(s) 19
ApeKI GCWGC 1 cut(s) 506
ArsI GACNNNNNNTTYG 2 cut(s) 602, 634
AspLEI GCGC 2 cut(s) 101, 305
AspS9I GGNCC 4 cut(s) 283, 390, 434, 596
AsuC2I CCSGG 3 cut(s) 438, 489, 594
AsuHPI GGTGA 2 cut(s) 34, 250
AvaII GGWCC 1 cut(s) 283
BaeGI GKGCMC 2 cut(s) 280, 566
BamHI GGATCC 1 cut(s) 316
BanI GGYRCC 2 cut(s) 275, 563
BanII GRGCYC 2 cut(s) 188, 558
BauI CACGAG 1 cut(s) 54
Bbv12I GWGCWC 2 cut(s) 188, 558
BbvI GCAGC 1 cut(s) 493
BccI CCATC 1 cut(s) 650
BceAI ACGGC 2 cut(s) 51, 506
BciT130I CCWGG 5 cut(s) 95, 281, 293, 353, 704
BciVI GTATCC 1 cut(s) 485
BcnI CCSGG 3 cut(s) 438, 489, 594
BcoDI GTCTC 3 cut(s) 336, 521, 632
BfuI GTATCC 1 cut(s) 485
BglI GCCNNNNNGGC 3 cut(s) 398, 515, 672
BisI GCNGC 7 cut(s) 198, 414, 433, 498, 507, 519, 676
BlsI GCNGC 7 cut(s) 199, 415, 434, 499, 508, 520, 677
Bme1390I CCNGG 8 cut(s) 95, 281, 293, 353, 438, 489, 594, 704
Bme18I GGWCC 1 cut(s) 283
BmgT120I GGNCC 4 cut(s) 283, 390, 434, 596
BmiI GGNNCC 5 cut(s) 277, 318, 391, 436, 565
BmrFI CCNGG 8 cut(s) 95, 281, 293, 353, 438, 489, 594, 704
BmsI GCATC 5 cut(s) 69, 474, 579, 649, 718
BpuEI CTTGAG 1 cut(s) 542
BpuMI CCSGG 3 cut(s) 438, 489, 594
BsaBI GATNNNNATC 1 cut(s) 231
BsaHI GRCGYC 1 cut(s) 309
BsaI GGTCTC 2 cut(s) 521, 632
BsaJI CCNNGG 9 cut(s) 93, 94, 279, 436, 513, 522, 549, 679, 702
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 6 cut(s) 94, 292, 334, 358, 474, 648
Bse118I RCCGGY 5 cut(s) 44, 305, 566, 623, 722
Bse1I ACTGG 1 cut(s) 126
Bse3DI GCAATG 1 cut(s) 201
Bse8I GATNNNNATC 1 cut(s) 231
BseBI CCWGG 5 cut(s) 95, 281, 293, 353, 704
BseDI CCNNGG 9 cut(s) 93, 94, 279, 436, 513, 522, 549, 679, 702
BseGI GGATG 2 cut(s) 288, 664
BseJI GATNNNNATC 1 cut(s) 231
BseLI CCNNNNNNNGG 6 cut(s) 94, 292, 334, 358, 474, 648
BseMI GCAATG 1 cut(s) 201
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 1 cut(s) 126
BseRI GAGGAG 2 cut(s) 236, 650
BseSI GKGCMC 2 cut(s) 280, 566
BseX3I CGGCCG 1 cut(s) 64
BseXI GCAGC 1 cut(s) 493
Bsh1236I CGCG 1 cut(s) 432
Bsh1285I CGRYCG 1 cut(s) 67
BshNI GGYRCC 2 cut(s) 275, 563
BsiEI CGRYCG 1 cut(s) 67
BsiHKAI GWGCWC 2 cut(s) 188, 558
BsiSI CCGG 8 cut(s) 45, 306, 438, 489, 567, 594, 624, 723
BslFI GGGAC 2 cut(s) 492, 685
BslI CCNNNNNNNGG 6 cut(s) 94, 292, 334, 358, 474, 648
BsmAI GTCTC 3 cut(s) 336, 521, 632
BsmBI CGTCTC 1 cut(s) 336
BsmFI GGGAC 2 cut(s) 492, 685
Bso31I GGTCTC 2 cut(s) 521, 632
Bsp1286I GDGCHC 4 cut(s) 188, 280, 558, 566
Bsp143I GATC 5 cut(s) 226, 232, 316, 651, 741
BspACI CCGC 9 cut(s) 28, 48, 197, 414, 432, 441, 498, 519, 676
BspCNI CTCAG 1 cut(s) 25
BspFNI CGCG 1 cut(s) 432
BspHI TCATGA 1 cut(s) 453
BspLI GGNNCC 5 cut(s) 277, 318, 391, 436, 565
BspPI GGATC 5 cut(s) 221, 311, 324, 659, 749
BspT107I GGYRCC 2 cut(s) 275, 563
BspTNI GGTCTC 2 cut(s) 521, 632
BsrDI GCAATG 1 cut(s) 201
BsrFI RCCGGY 5 cut(s) 44, 305, 566, 623, 722
BsrI ACTGG 1 cut(s) 126
BssAI RCCGGY 5 cut(s) 44, 305, 566, 623, 722
BssECI CCNNGG 9 cut(s) 93, 94, 279, 436, 513, 522, 549, 679, 702
BssMI GATC 5 cut(s) 226, 232, 316, 651, 741
BssNI GRCGYC 1 cut(s) 309
BssSI CACGAG 1 cut(s) 54
BssT1I CCWWGG 3 cut(s) 513, 549, 679
Bst2BI CACGAG 1 cut(s) 54
Bst2UI CCWGG 5 cut(s) 95, 281, 293, 353, 704
Bst4CI ACNGT 3 cut(s) 192, 584, 749
Bst6I CTCTTC 2 cut(s) 254, 620
BstACI GRCGYC 1 cut(s) 309
BstC8I GCNNGC 5 cut(s) 138, 307, 403, 664, 724
BstDEI CTNAG 1 cut(s) 12
BstDSI CCRYGG 1 cut(s) 522
BstF5I GGATG 2 cut(s) 288, 664
BstFNI CGCG 1 cut(s) 432
BstHHI GCGC 2 cut(s) 101, 305
BstKTI GATC 5 cut(s) 229, 235, 319, 654, 744
BstMAI GTCTC 3 cut(s) 336, 521, 632
BstMBI GATC 5 cut(s) 226, 232, 316, 651, 741
BstMCI CGRYCG 1 cut(s) 67
BstMWI GCNNNNNNNGC 9 cut(s) 203, 212, 398, 438, 503, 506, 515, 672, 728
BstNI CCWGG 5 cut(s) 95, 281, 293, 353, 704
BstSCI CCNGG 8 cut(s) 93, 279, 291, 351, 436, 487, 592, 702
BstSLI GKGCMC 2 cut(s) 280, 566
BstUI CGCG 1 cut(s) 432
BstV1I GCAGC 1 cut(s) 493
BstX2I RGATCY 2 cut(s) 226, 316
BstXI CCANNNNNNTGG 1 cut(s) 710
BstYI RGATCY 2 cut(s) 226, 316
BstZI CGGCCG 1 cut(s) 64
BsuI GTATCC 1 cut(s) 485
BtgI CCRYGG 1 cut(s) 522
BtgZI GCGATG 1 cut(s) 741
BtsCI GGATG 2 cut(s) 288, 664
BtsI GCAGTG 1 cut(s) 573
BtsIMutI CAGTG 1 cut(s) 573
Cac8I GCNNGC 5 cut(s) 138, 307, 403, 664, 724
CaiI CAGNNNCTG 1 cut(s) 19
CciI TCATGA 1 cut(s) 453
CfoI GCGC 2 cut(s) 101, 305
Cfr10I RCCGGY 5 cut(s) 44, 305, 566, 623, 722
Cfr13I GGNCC 4 cut(s) 283, 390, 434, 596
CseI GACGC 1 cut(s) 298
Csp6I GTAC 1 cut(s) 325
CspCI CAANNNNNGTGG 2 cut(s) 451, 486
CviAII CATG 2 cut(s) 454, 532
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 1 cut(s) 12
DpnI GATC 5 cut(s) 228, 234, 318, 653, 743
DpnII GATC 5 cut(s) 226, 232, 316, 651, 741
DrdI GACNNNNNNGTC 1 cut(s) 347
DseDI GACNNNNNNGTC 1 cut(s) 347
EaeI YGGCCR 4 cut(s) 64, 198, 336, 673
EagI CGGCCG 1 cut(s) 64
Eam1104I CTCTTC 2 cut(s) 254, 620
EarI CTCTTC 2 cut(s) 254, 620
EciI GGCGGA 1 cut(s) 456
Ecl136II GAGCTC 2 cut(s) 186, 556
EclXI CGGCCG 1 cut(s) 64
Eco130I CCWWGG 3 cut(s) 513, 549, 679
Eco24I GRGCYC 2 cut(s) 188, 558
Eco31I GGTCTC 2 cut(s) 521, 632
Eco47I GGWCC 1 cut(s) 283
Eco52I CGGCCG 1 cut(s) 64
Eco53kI GAGCTC 2 cut(s) 186, 556
EcoICRI GAGCTC 2 cut(s) 186, 556
EcoO109I RGGNCCY 1 cut(s) 390
EcoRII CCWGG 5 cut(s) 93, 279, 291, 351, 702
EcoT14I CCWWGG 3 cut(s) 513, 549, 679
EcoT38I GRGCYC 2 cut(s) 188, 558
ErhI CCWWGG 3 cut(s) 513, 549, 679
Esp3I CGTCTC 1 cut(s) 336
FaeI CATG 2 cut(s) 457, 535
FaiI YATR 4 cut(s) 368, 455, 504, 533
FalI AAGNNNNNCTT 2 cut(s) 233, 265
FaqI GGGAC 2 cut(s) 492, 685
FatI CATG 2 cut(s) 453, 531
FauI CCCGC 1 cut(s) 21
Fnu4HI GCNGC 7 cut(s) 198, 414, 433, 498, 507, 519, 676
FokI GGATG 2 cut(s) 275, 671
FriOI GRGCYC 2 cut(s) 188, 558
Fsp4HI GCNGC 7 cut(s) 198, 414, 433, 498, 507, 519, 676
GlaI GCGC 2 cut(s) 100, 304
GluI GCNGC 7 cut(s) 198, 414, 433, 498, 507, 519, 676
HapII CCGG 8 cut(s) 45, 306, 438, 489, 567, 594, 624, 723
HgaI GACGC 1 cut(s) 298
HhaI GCGC 2 cut(s) 101, 305
Hin1I GRCGYC 1 cut(s) 309
Hin1II CATG 2 cut(s) 457, 535
Hin6I GCGC 2 cut(s) 99, 303
HinP1I GCGC 2 cut(s) 99, 303
HincII GTYRAC 3 cut(s) 298, 379, 686
HindII GTYRAC 3 cut(s) 298, 379, 686
HinfI GANTC 2 cut(s) 16, 423
HpaII CCGG 8 cut(s) 45, 306, 438, 489, 567, 594, 624, 723
HphI GGTGA 2 cut(s) 34, 250
Hpy166II GTNNAC 5 cut(s) 82, 286, 298, 379, 686
Hpy188I TCNGA 4 cut(s) 15, 21, 226, 785
Hpy188III TCNNGA 2 cut(s) 230, 454
Hpy8I GTNNAC 5 cut(s) 82, 286, 298, 379, 686
HpyAV CCTTC 1 cut(s) 403
HpyCH4III ACNGT 3 cut(s) 192, 584, 749
HpyCH4V TGCA 3 cut(s) 206, 405, 731
HpyF10VI GCNNNNNNNGC 9 cut(s) 203, 212, 398, 438, 503, 506, 515, 672, 728
HpyF3I CTNAG 1 cut(s) 12
Hsp92I GRCGYC 1 cut(s) 309
Hsp92II CATG 2 cut(s) 457, 535
HspAI GCGC 2 cut(s) 99, 303
KroI GCCGGC 2 cut(s) 305, 722
KroNI GCCGGC 2 cut(s) 307, 724
Kzo9I GATC 5 cut(s) 226, 232, 316, 651, 741
LmnI GCTCC 3 cut(s) 249, 553, 595
Lsp1109I GCAGC 1 cut(s) 493
LweI GCATC 5 cut(s) 69, 474, 579, 649, 718
MaeIII GTNAC 1 cut(s) 40
MalI GATC 5 cut(s) 228, 234, 318, 653, 743
MboI GATC 5 cut(s) 226, 232, 316, 651, 741
MboII GAAGA 4 cut(s) 241, 456, 607, 610
MfeI CAATTG 1 cut(s) 36
MflI RGATCY 2 cut(s) 226, 316
MhlI GDGCHC 4 cut(s) 188, 280, 558, 566
MluCI AATT 6 cut(s) 36, 72, 146, 269, 447, 540
MlyI GAGTC 1 cut(s) 417
MmeI TCCRAC 1 cut(s) 691
MreI CGCCGGCG 1 cut(s) 305
MroNI GCCGGC 2 cut(s) 305, 722
MseI TTAA 1 cut(s) 765
MspI CCGG 8 cut(s) 45, 306, 438, 489, 567, 594, 624, 723
MspR9I CCNGG 8 cut(s) 95, 281, 293, 353, 438, 489, 594, 704
MunI CAATTG 1 cut(s) 36
MvaI CCWGG 5 cut(s) 95, 281, 293, 353, 704
MvnI CGCG 1 cut(s) 432
MwoI GCNNNNNNNGC 9 cut(s) 203, 212, 398, 438, 503, 506, 515, 672, 728
NaeI GCCGGC 2 cut(s) 307, 724
NciI CCSGG 3 cut(s) 438, 489, 594
NdeII GATC 5 cut(s) 226, 232, 316, 651, 741
NgoMIV GCCGGC 2 cut(s) 305, 722
NlaIII CATG 2 cut(s) 457, 535
NlaIV GGNNCC 5 cut(s) 277, 318, 391, 436, 565
NmeAIII GCCGAG 1 cut(s) 286
NmuCI GTSAC 1 cut(s) 40
PagI TCATGA 1 cut(s) 453
PasI CCCWGGG 1 cut(s) 94
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PdiI GCCGGC 2 cut(s) 307, 724
PfeI GAWTC 1 cut(s) 16
PflMI CCANNNNNTGG 2 cut(s) 94, 292
PfoI TCCNGGA 1 cut(s) 351
PkrI GCNGC 7 cut(s) 199, 415, 434, 499, 508, 520, 677
PleI GAGTC 1 cut(s) 417
PpsI GAGTC 1 cut(s) 417
Psp124BI GAGCTC 2 cut(s) 188, 558
Psp6I CCWGG 5 cut(s) 93, 279, 291, 351, 702
PspGI CCWGG 5 cut(s) 93, 279, 291, 351, 702
PspN4I GGNNCC 5 cut(s) 277, 318, 391, 436, 565
PspPI GGNCC 4 cut(s) 283, 390, 434, 596
PstNI CAGNNNCTG 1 cut(s) 19
PsuI RGATCY 2 cut(s) 226, 316
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
SacI GAGCTC 2 cut(s) 188, 558
SaqAI TTAA 1 cut(s) 765
SatI GCNGC 7 cut(s) 198, 414, 433, 498, 507, 519, 676
Sau3AI GATC 5 cut(s) 226, 232, 316, 651, 741
Sau96I GGNCC 4 cut(s) 283, 390, 434, 596
SchI GAGTC 1 cut(s) 417
ScrFI CCNGG 8 cut(s) 95, 281, 293, 353, 438, 489, 594, 704
SduI GDGCHC 4 cut(s) 188, 280, 558, 566
SfaNI GCATC 5 cut(s) 69, 474, 579, 649, 718
SgrAI CRCCGGYG 2 cut(s) 44, 305
SinI GGWCC 1 cut(s) 283
SmlI CTYRAG 1 cut(s) 557
SmoI CTYRAG 1 cut(s) 557
Sse9I AATT 6 cut(s) 36, 72, 146, 269, 447, 540
SsiI CCGC 9 cut(s) 28, 48, 197, 414, 432, 441, 498, 519, 676
SstI GAGCTC 2 cut(s) 188, 558
StyD4I CCNGG 8 cut(s) 93, 279, 291, 351, 436, 487, 592, 702
StyI CCWWGG 3 cut(s) 513, 549, 679
TaaI ACNGT 3 cut(s) 192, 584, 749
TaqI TCGA 1 cut(s) 252
TasI AATT 6 cut(s) 36, 72, 146, 269, 447, 540
TauI GCSGC 6 cut(s) 200, 416, 435, 500, 521, 678
TfiI GAWTC 1 cut(s) 16
Tru1I TTAA 1 cut(s) 765
Tru9I TTAA 1 cut(s) 765
TscAI CASTG 1 cut(s) 580
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 1 cut(s) 506
Tsp45I GTSAC 1 cut(s) 40
TspGWI ACGGA 1 cut(s) 457
TspRI CASTG 1 cut(s) 580
Van91I CCANNNNNTGG 2 cut(s) 94, 292
VpaK11BI GGWCC 1 cut(s) 283
XcmI CCANNNNNNNNNTGG 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.