Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8233681.1

Orthogroup ID

OG0008711

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 619

Gene Structure 619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8233681.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 619 bp

caacaacaacaaccagagctcacagttggcggccattgcagtaaaagcagatgtttcagatccagatcaggtgaagctcctcttcgacaaagctgagcaagaattgggtgcccaggtccacatcctggtcaactgcgccggcgtcttggatcccaagtacccgtctctggccgacacctgtgtccaggattgggataacatattcaatgtcaacaccaaaggggccttcttggcttgcagagaggccgccaacagactcccacgcggcgccggcggaagaattatcatgattacctcctcccttgttgggggactgatgccgggatacgccgcctatactgcctccaaggcggccgtggagaccatgaccaaaattgtcgccaaggagctcaagggcaccggcatcactgccaactgtgttgctcccggccctgttgccactgacctcttcttcgccggtaaaagtgaggagaccatcaacaggatcaaggatgcttgccctcttggccgccttggtcagccccacgatgtgtcccaggttgtcggatttttagccggcgatgcaggggagtggatcaacggtcaggtcattagggttaatggtggatttgtcatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00061 ko00333 ko00780 ko01040 ko01100 ko01130 ko01212 map00061 map00333 map00780 map01040 map01100 map01130 map01212

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

205

Amino Acids

21.53

Weight (kDa)

5.7

Isoelectric Point (pI)

25.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13180
fragaria_vesca	FvH4_4g13260
malus_domestica	MD03G1214200.v1.1 MD10G1132600.v1.1 MD14G1002100.v1.1
prunus_persica	Prupe.8G053700_v2.0.a1 Prupe.8G053800_v2.0.a1
pyrus_communis	pycom03g16290 pycom10g11380 pycom49g00170
rosa_chinensis	RchiOBHm_Chr3g0497441
rosa_laevigata	RLG00000022461 RLG00000022463
rosa_multiflora	Rmu_co8233681.1_g000001 Rmu_sc0008086.1_g000011
rosa_roxburghii	Rroxscaffold_166G00440680 Rroxscaffold_6G00388040
rosa_rugosa	Rorug03G0293000
rosa_samantha	Rh3AG336600 Rh3BG374900 Rh3CG370800 Rh3DG371700
rosa_wichuraiana	Rw3G029590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	180
AccB1I	GGYRCC	3 cut(s)	108, 267, 396
AccB7I	CCANNNNNTGG	1 cut(s)	125
AccII	CGCG	1 cut(s)	265
AciI	CCGC	7 cut(s)	30, 247, 265, 274, 331, 351, 509
AclWI	GGATC	5 cut(s)	54, 144, 157, 492, 582
AcoI	YGGCCR	4 cut(s)	31, 169, 352, 506
AcyI	GRCGYC	2 cut(s)	142, 268
AdeI	CACNNNGTG	1 cut(s)	530
AfaI	GTAC	1 cut(s)	159
AfiI	CCNNNNNNNGG	6 cut(s)	125, 167, 191, 307, 308, 481
AgsI	TTSAA	1 cut(s)	206
AjnI	CCWGG	4 cut(s)	112, 124, 184, 535
AjuI	GAANNNNNNNTTGG	2 cut(s)	210, 242
AluBI	AGCT	4 cut(s)	19, 77, 93, 389
AluI	AGCT	4 cut(s)	19, 77, 93, 389
Alw21I	GWGCWC	2 cut(s)	21, 391
Alw26I	GTCTC	3 cut(s)	169, 354, 465
AlwI	GGATC	5 cut(s)	54, 144, 157, 492, 582
AoxI	GGCC	7 cut(s)	31, 169, 223, 244, 352, 428, 506
ArsI	GACNNNNNNTTYG	2 cut(s)	435, 467
AspLEI	GCGC	2 cut(s)	138, 270
AspS9I	GGNCC	3 cut(s)	116, 223, 429
AsuC2I	CCSGG	2 cut(s)	322, 427
AsuHPI	GGTGA	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	116
BaeGI	GKGCMC	2 cut(s)	113, 399
BamHI	GGATCC	1 cut(s)	149
BanI	GGYRCC	3 cut(s)	108, 267, 396
BanII	GRGCYC	2 cut(s)	21, 391
Bbv12I	GWGCWC	2 cut(s)	21, 391
BccI	CCATC	1 cut(s)	483
BceAI	ACGGC	1 cut(s)	339
BciT130I	CCWGG	4 cut(s)	114, 126, 186, 537
BciVI	GTATCC	1 cut(s)	318
BcnI	CCSGG	2 cut(s)	322, 427
BcoDI	GTCTC	3 cut(s)	169, 354, 465
BfoI	RGCGCY	1 cut(s)	271
BfuI	GTATCC	1 cut(s)	318
BglI	GCCNNNNNGGC	3 cut(s)	231, 348, 505
BisI	GCNGC	6 cut(s)	31, 247, 266, 331, 352, 509
BlpI	GCTNAGC	1 cut(s)	94
BlsI	GCNGC	6 cut(s)	32, 248, 267, 332, 353, 510
Bme1390I	CCNGG	6 cut(s)	114, 126, 186, 322, 427, 537
Bme18I	GGWCC	1 cut(s)	116
BmgT120I	GGNCC	3 cut(s)	116, 223, 429
BmiI	GGNNCC	5 cut(s)	110, 151, 224, 269, 398
BmrFI	CCNGG	6 cut(s)	114, 126, 186, 322, 427, 537
BmsI	GCATC	4 cut(s)	307, 412, 482, 551
Bpu1102I	GCTNAGC	1 cut(s)	94
BpuEI	CTTGAG	1 cut(s)	375
BpuMI	CCSGG	2 cut(s)	322, 427
BsaBI	GATNNNNATC	1 cut(s)	64
BsaHI	GRCGYC	2 cut(s)	142, 268
BsaI	GGTCTC	2 cut(s)	354, 465
BsaJI	CCNNGG	6 cut(s)	112, 346, 355, 382, 512, 535
Bsc4I	CCNNNNNNNGG	6 cut(s)	125, 167, 191, 307, 308, 481
Bse118I	RCCGGY	5 cut(s)	138, 270, 399, 456, 555
Bse3DI	GCAATG	1 cut(s)	34
Bse8I	GATNNNNATC	1 cut(s)	64
BseBI	CCWGG	4 cut(s)	114, 126, 186, 537
BseDI	CCNNGG	6 cut(s)	112, 346, 355, 382, 512, 535
BseGI	GGATG	2 cut(s)	121, 497
BseJI	GATNNNNATC	1 cut(s)	64
BseLI	CCNNNNNNNGG	6 cut(s)	125, 167, 191, 307, 308, 481
BseMI	GCAATG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	85
BseRI	GAGGAG	3 cut(s)	69, 287, 483
BseSI	GKGCMC	2 cut(s)	113, 399
BseX3I	CGGCCG	1 cut(s)	352
Bsh1236I	CGCG	1 cut(s)	265
Bsh1285I	CGRYCG	1 cut(s)	355
BshFI	GGCC	7 cut(s)	33, 171, 225, 246, 354, 430, 508
BshNI	GGYRCC	3 cut(s)	108, 267, 396
BsiEI	CGRYCG	1 cut(s)	355
BsiHKAI	GWGCWC	2 cut(s)	21, 391
BsiSI	CCGG	7 cut(s)	139, 271, 321, 400, 427, 457, 556
BslFI	GGGAC	2 cut(s)	325, 518
BslI	CCNNNNNNNGG	6 cut(s)	125, 167, 191, 307, 308, 481
BsmAI	GTCTC	3 cut(s)	169, 354, 465
BsmBI	CGTCTC	1 cut(s)	169
BsmFI	GGGAC	2 cut(s)	325, 518
BsnI	GGCC	7 cut(s)	33, 171, 225, 246, 354, 430, 508
Bso31I	GGTCTC	2 cut(s)	354, 465
Bsp1286I	GDGCHC	4 cut(s)	21, 113, 391, 399
Bsp143I	GATC	5 cut(s)	59, 65, 149, 484, 574
Bsp1720I	GCTNAGC	1 cut(s)	94
BspACI	CCGC	7 cut(s)	30, 247, 265, 274, 331, 351, 509
BspANI	GGCC	7 cut(s)	33, 171, 225, 246, 354, 430, 508
BspCNI	CTCAG	1 cut(s)	86
BspFNI	CGCG	1 cut(s)	265
BspHI	TCATGA	1 cut(s)	286
BspLI	GGNNCC	5 cut(s)	110, 151, 224, 269, 398
BspPI	GGATC	5 cut(s)	54, 144, 157, 492, 582
BspT107I	GGYRCC	3 cut(s)	108, 267, 396
BspTNI	GGTCTC	2 cut(s)	354, 465
BsrDI	GCAATG	1 cut(s)	34
BsrFI	RCCGGY	5 cut(s)	138, 270, 399, 456, 555
BssAI	RCCGGY	5 cut(s)	138, 270, 399, 456, 555
BssECI	CCNNGG	6 cut(s)	112, 346, 355, 382, 512, 535
BssMI	GATC	5 cut(s)	59, 65, 149, 484, 574
BssNI	GRCGYC	2 cut(s)	142, 268
BssT1I	CCWWGG	3 cut(s)	346, 382, 512
Bst2UI	CCWGG	4 cut(s)	114, 126, 186, 537
Bst4CI	ACNGT	3 cut(s)	25, 417, 582
Bst6I	CTCTTC	2 cut(s)	87, 453
BstACI	GRCGYC	2 cut(s)	142, 268
BstC8I	GCNNGC	5 cut(s)	140, 236, 272, 497, 557
BstDEI	CTNAG	1 cut(s)	94
BstDSI	CCRYGG	1 cut(s)	355
BstF5I	GGATG	2 cut(s)	121, 497
BstFNI	CGCG	1 cut(s)	265
BstH2I	RGCGCY	1 cut(s)	271
BstHHI	GCGC	2 cut(s)	138, 270
BstKTI	GATC	5 cut(s)	62, 68, 152, 487, 577
BstMAI	GTCTC	3 cut(s)	169, 354, 465
BstMBI	GATC	5 cut(s)	59, 65, 149, 484, 574
BstMCI	CGRYCG	1 cut(s)	355
BstMWI	GCNNNNNNNGC	8 cut(s)	36, 45, 231, 271, 339, 348, 505, 561
BstNI	CCWGG	4 cut(s)	114, 126, 186, 537
BstSCI	CCNGG	6 cut(s)	112, 124, 184, 320, 425, 535
BstSLI	GKGCMC	2 cut(s)	113, 399
BstUI	CGCG	1 cut(s)	265
BstX2I	RGATCY	2 cut(s)	59, 149
BstYI	RGATCY	2 cut(s)	59, 149
BstZI	CGGCCG	1 cut(s)	352
BsuI	GTATCC	1 cut(s)	318
BsuRI	GGCC	7 cut(s)	33, 171, 225, 246, 354, 430, 508
BtgI	CCRYGG	1 cut(s)	355
BtgZI	GCGATG	1 cut(s)	574
BtsCI	GGATG	2 cut(s)	121, 497
BtsI	GCAGTG	1 cut(s)	406
BtsIMutI	CAGTG	2 cut(s)	406, 439
Cac8I	GCNNGC	5 cut(s)	140, 236, 272, 497, 557
CciI	TCATGA	1 cut(s)	286
CfoI	GCGC	2 cut(s)	138, 270
Cfr10I	RCCGGY	5 cut(s)	138, 270, 399, 456, 555
Cfr13I	GGNCC	3 cut(s)	116, 223, 429
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	158
CviAII	CATG	2 cut(s)	287, 365
CviQI	GTAC	1 cut(s)	158
DdeI	CTNAG	1 cut(s)	94
DinI	GGCGCC	1 cut(s)	269
DpnI	GATC	5 cut(s)	61, 67, 151, 486, 576
DpnII	GATC	5 cut(s)	59, 65, 149, 484, 574
DraIII	CACNNNGTG	1 cut(s)	530
DrdI	GACNNNNNNGTC	1 cut(s)	180
DseDI	GACNNNNNNGTC	1 cut(s)	180
EaeI	YGGCCR	4 cut(s)	31, 169, 352, 506
EagI	CGGCCG	1 cut(s)	352
Eam1104I	CTCTTC	2 cut(s)	87, 453
EarI	CTCTTC	2 cut(s)	87, 453
EciI	GGCGGA	1 cut(s)	289
Ecl136II	GAGCTC	2 cut(s)	19, 389
EclXI	CGGCCG	1 cut(s)	352
Eco130I	CCWWGG	3 cut(s)	346, 382, 512
Eco24I	GRGCYC	2 cut(s)	21, 391
Eco31I	GGTCTC	2 cut(s)	354, 465
Eco47I	GGWCC	1 cut(s)	116
Eco52I	CGGCCG	1 cut(s)	352
Eco53kI	GAGCTC	2 cut(s)	19, 389
EcoICRI	GAGCTC	2 cut(s)	19, 389
EcoO109I	RGGNCCY	1 cut(s)	223
EcoRII	CCWGG	4 cut(s)	112, 124, 184, 535
EcoT14I	CCWWGG	3 cut(s)	346, 382, 512
EcoT38I	GRGCYC	2 cut(s)	21, 391
EgeI	GGCGCC	1 cut(s)	269
EheI	GGCGCC	1 cut(s)	269
ErhI	CCWWGG	3 cut(s)	346, 382, 512
Esp3I	CGTCTC	1 cut(s)	169
FaeI	CATG	2 cut(s)	290, 368
FaiI	YATR	4 cut(s)	201, 288, 337, 366
FalI	AAGNNNNNCTT	2 cut(s)	66, 98
FaqI	GGGAC	2 cut(s)	325, 518
FatI	CATG	2 cut(s)	286, 364
Fnu4HI	GCNGC	6 cut(s)	31, 247, 266, 331, 352, 509
FokI	GGATG	2 cut(s)	108, 504
FriOI	GRGCYC	2 cut(s)	21, 391
Fsp4HI	GCNGC	6 cut(s)	31, 247, 266, 331, 352, 509
GlaI	GCGC	2 cut(s)	137, 269
GluI	GCNGC	6 cut(s)	31, 247, 266, 331, 352, 509
HaeII	RGCGCY	1 cut(s)	271
HaeIII	GGCC	7 cut(s)	33, 171, 225, 246, 354, 430, 508
HapII	CCGG	7 cut(s)	139, 271, 321, 400, 427, 457, 556
HgaI	GACGC	1 cut(s)	131
HhaI	GCGC	2 cut(s)	138, 270
Hin1I	GRCGYC	2 cut(s)	142, 268
Hin1II	CATG	2 cut(s)	290, 368
Hin6I	GCGC	2 cut(s)	136, 268
HinP1I	GCGC	2 cut(s)	136, 268
HincII	GTYRAC	2 cut(s)	131, 212
HindII	GTYRAC	2 cut(s)	131, 212
HinfI	GANTC	1 cut(s)	256
HpaII	CCGG	7 cut(s)	139, 271, 321, 400, 427, 457, 556
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	3 cut(s)	119, 131, 212
Hpy188I	TCNGA	3 cut(s)	59, 546, 618
Hpy188III	TCNNGA	2 cut(s)	63, 287
Hpy8I	GTNNAC	3 cut(s)	119, 131, 212
HpyAV	CCTTC	1 cut(s)	236
HpyCH4III	ACNGT	3 cut(s)	25, 417, 582
HpyCH4V	TGCA	3 cut(s)	39, 238, 564
HpyF10VI	GCNNNNNNNGC	8 cut(s)	36, 45, 231, 271, 339, 348, 505, 561
HpyF3I	CTNAG	1 cut(s)	94
Hsp92I	GRCGYC	2 cut(s)	142, 268
Hsp92II	CATG	2 cut(s)	290, 368
HspAI	GCGC	2 cut(s)	136, 268
KasI	GGCGCC	1 cut(s)	267
KroI	GCCGGC	3 cut(s)	138, 270, 555
KroNI	GCCGGC	3 cut(s)	140, 272, 557
Kzo9I	GATC	5 cut(s)	59, 65, 149, 484, 574
LmnI	GCTCC	3 cut(s)	82, 386, 428
LweI	GCATC	4 cut(s)	307, 412, 482, 551
MalI	GATC	5 cut(s)	61, 67, 151, 486, 576
MboI	GATC	5 cut(s)	59, 65, 149, 484, 574
MboII	GAAGA	4 cut(s)	74, 289, 440, 443
MflI	RGATCY	2 cut(s)	59, 149
MhlI	GDGCHC	4 cut(s)	21, 113, 391, 399
MluCI	AATT	3 cut(s)	102, 280, 373
Mly113I	GGCGCC	1 cut(s)	268
MlyI	GAGTC	1 cut(s)	250
MmeI	TCCRAC	1 cut(s)	524
MnlI	CCTC	8 cut(s)	90, 236, 305, 308, 353, 456, 461, 511
MreI	CGCCGGCG	2 cut(s)	138, 270
MroNI	GCCGGC	3 cut(s)	138, 270, 555
MseI	TTAA	1 cut(s)	598
MspI	CCGG	7 cut(s)	139, 271, 321, 400, 427, 457, 556
MspR9I	CCNGG	6 cut(s)	114, 126, 186, 322, 427, 537
MvaI	CCWGG	4 cut(s)	114, 126, 186, 537
MvnI	CGCG	1 cut(s)	265
MwoI	GCNNNNNNNGC	8 cut(s)	36, 45, 231, 271, 339, 348, 505, 561
NaeI	GCCGGC	3 cut(s)	140, 272, 557
NarI	GGCGCC	1 cut(s)	268
NciI	CCSGG	2 cut(s)	322, 427
NdeII	GATC	5 cut(s)	59, 65, 149, 484, 574
NgoMIV	GCCGGC	3 cut(s)	138, 270, 555
NlaIII	CATG	2 cut(s)	290, 368
NlaIV	GGNNCC	5 cut(s)	110, 151, 224, 269, 398
PagI	TCATGA	1 cut(s)	286
PdiI	GCCGGC	3 cut(s)	140, 272, 557
PflMI	CCANNNNNTGG	1 cut(s)	125
PfoI	TCCNGGA	1 cut(s)	184
PkrI	GCNGC	6 cut(s)	32, 248, 267, 332, 353, 510
PleI	GAGTC	1 cut(s)	250
PluTI	GGCGCC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	250
Psp124BI	GAGCTC	2 cut(s)	21, 391
Psp6I	CCWGG	4 cut(s)	112, 124, 184, 535
PspGI	CCWGG	4 cut(s)	112, 124, 184, 535
PspN4I	GGNNCC	5 cut(s)	110, 151, 224, 269, 398
PspPI	GGNCC	3 cut(s)	116, 223, 429
PsuI	RGATCY	2 cut(s)	59, 149
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
SacI	GAGCTC	2 cut(s)	21, 391
SaqAI	TTAA	1 cut(s)	598
SatI	GCNGC	6 cut(s)	31, 247, 266, 331, 352, 509
Sau3AI	GATC	5 cut(s)	59, 65, 149, 484, 574
Sau96I	GGNCC	3 cut(s)	116, 223, 429
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	6 cut(s)	114, 126, 186, 322, 427, 537
SduI	GDGCHC	4 cut(s)	21, 113, 391, 399
SfaNI	GCATC	4 cut(s)	307, 412, 482, 551
SfoI	GGCGCC	1 cut(s)	269
SgrAI	CRCCGGYG	2 cut(s)	138, 270
SinI	GGWCC	1 cut(s)	116
SmlI	CTYRAG	1 cut(s)	390
SmoI	CTYRAG	1 cut(s)	390
Sse9I	AATT	3 cut(s)	102, 280, 373
SsiI	CCGC	7 cut(s)	30, 247, 265, 274, 331, 351, 509
SspDI	GGCGCC	1 cut(s)	267
SstI	GAGCTC	2 cut(s)	21, 391
StyD4I	CCNGG	6 cut(s)	112, 124, 184, 320, 425, 535
StyI	CCWWGG	3 cut(s)	346, 382, 512
TaaI	ACNGT	3 cut(s)	25, 417, 582
TaqI	TCGA	1 cut(s)	85
TasI	AATT	3 cut(s)	102, 280, 373
TauI	GCSGC	6 cut(s)	33, 249, 268, 333, 354, 511
Tru1I	TTAA	1 cut(s)	598
Tru9I	TTAA	1 cut(s)	598
TscAI	CASTG	2 cut(s)	413, 446
TspRI	CASTG	2 cut(s)	413, 446
Van91I	CCANNNNNTGG	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	116
XcmI	CCANNNNNNNNNTGG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.