Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005599

Physical Location & Seq

Genomic Coordinates Reverse (-)

9641859 .. 9643738

Gene Structure 1880 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G17160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGTCTTATGCTTATAGATTTAAGTATATCATCATCGGTGATACTGGAGTAGGGAAATCATGCCTTCTGCTTAAGTTCACCGACAAGAGGTTTCAAGCAGTGCATGATCTCACCATTGGTGTTGAATTTGGGGCCAAGACGATCACTATCGACAACAAACCCATCAAACTTCAGATCTGGGATACGGCTGGTCAAGAATCATTTAGGTCTGTTACAAGGTCATACTATAGAGGGCGTGCCGGTACATTGCTTGTATATGATATCACAAGGAGGGAGACATTTAACCATCTAGCCAGCTGGCTAGAAGAGGCAAGACAGCATGCAAGTGAAAATATGACGACAATGCTCATTGGGAATAAGTGTGATCTTGAAGATAAAAGGACAGTGAGTACAGAGGAAGGAGAACAGTTTGCTAGGGAGCATGGTCTTATATTCATGGAGGCCTCTGCTAAGACTGCTCACAATGTCGAGGAGGCATTCGTCGAGACAGCCGCAACAATATACAAAAGGATTCAAGATGGTGTGGTTGATGAGGCAAATGAGCCTGGAATAACTCCAGGGCCGTTTGGTGGAAAAGATGCATCCTCCTCACAGCAAAGAAGAGGGTGCTGCGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005794 GO:0005886 GO:0006810 GO:0006888 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0030100 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060627 GO:0065007 GO:0071944 GO:0097708 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko04152 map04152

Pfam Domains

Protein Families

Ras

Protein Analysis

205

Amino Acids

22.94

Weight (kDa)

6.23

Isoelectric Point (pI)

43.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	6 - 134	3.9e-13	ADP-ribosylation factor family
Ras	PF00071	8 - 168	2.7e-64	Ras family
Roc	PF08477	8 - 122	8.4e-33	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17160
fragaria_vesca	FvH4_3g00140
malus_domestica	MD05G1363800.v1.1 MD10G1341700.v1.1
prunus_persica	Prupe.4G001600_v2.0.a1 Prupe.4G001600_v2.0.a1 Prupe.4G001600_v2.0.a1
pyrus_communis	pycom05g32990 pycom10g29100
rosa_chinensis	RchiOBHm_Chr4g0425891 RchiOBHm_Chr5g0000191
rosa_laevigata	RLG00000018515 RLG00000030849
rosa_multiflora	Rmu_co8459821.1_g000001 Rmu_co8468425.1_g000001 Rmu_ssc0000243.1_g000011
rosa_roxburghii	Rroxscaffold_1G00075900 Rroxscaffold_2G00088190
rosa_rugosa	Rorug01G0341700 Rorug04G0382500
rosa_samantha	Rh2AG134900 Rh5CG001600 Rh5CG499000 Rh5DG001500 Rh6CG032700 Rh7DG362100
rosa_wichuraiana	Rw1G021010 Rw5G000180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	492, 612
AcsI	RAATTY	1 cut(s)	125
AcuI	CTGAAG	1 cut(s)	155
AfaI	GTAC	2 cut(s)	244, 391
AfiI	CCNNNNNNNGG	2 cut(s)	87, 569
AflII	CTTAAG	1 cut(s)	71
AgsI	TTSAA	4 cut(s)	95, 125, 371, 515
AjnI	CCWGG	2 cut(s)	544, 556
AluBI	AGCT	1 cut(s)	297
AluI	AGCT	1 cut(s)	297
Alw26I	GTCTC	2 cut(s)	269, 479
AoxI	GGCC	3 cut(s)	132, 441, 560
ApeKI	GCWGC	1 cut(s)	609
ApoI	RAATTY	1 cut(s)	125
AspS9I	GGNCC	2 cut(s)	132, 560
AsuHPI	GGTGA	3 cut(s)	50, 70, 103
BaeI	ACNNNNGTAYC	2 cut(s)	33, 66
BbvI	GCAGC	1 cut(s)	596
BccI	CCATC	3 cut(s)	170, 294, 512
BceAI	ACGGC	2 cut(s)	201, 547
BciT130I	CCWGG	2 cut(s)	546, 558
BciVI	GTATCC	1 cut(s)	175
BcoDI	GTCTC	2 cut(s)	269, 479
BfaI	CTAG	3 cut(s)	290, 302, 414
BfmI	CTRYAG	1 cut(s)	226
BfrI	CTTAAG	1 cut(s)	71
BfuI	GTATCC	1 cut(s)	175
BglII	AGATCT	1 cut(s)	174
BisI	GCNGC	3 cut(s)	492, 610, 613
BlsI	GCNGC	3 cut(s)	493, 611, 614
Bme1390I	CCNGG	2 cut(s)	546, 558
BmgT120I	GGNCC	2 cut(s)	132, 560
BmiI	GGNNCC	1 cut(s)	133
BmrFI	CCNGG	2 cut(s)	546, 558
BmsI	GCATC	2 cut(s)	568, 590
BpmI	CTGGAG	2 cut(s)	66, 540
BsaBI	GATNNNNATC	1 cut(s)	146
BsaJI	CCNNGG	1 cut(s)	557
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 569
Bse118I	RCCGGY	1 cut(s)	239
Bse1I	ACTGG	1 cut(s)	49
Bse3DI	GCAATG	1 cut(s)	245
Bse8I	GATNNNNATC	1 cut(s)	146
BseBI	CCWGG	2 cut(s)	546, 558
BseDI	CCNNGG	1 cut(s)	557
BseGI	GGATG	1 cut(s)	581
BseJI	GATNNNNATC	1 cut(s)	146
BseLI	CCNNNNNNNGG	2 cut(s)	87, 569
BseMI	GCAATG	1 cut(s)	245
BseNI	ACTGG	1 cut(s)	49
BseRI	GAGGAG	2 cut(s)	485, 577
BseXI	GCAGC	1 cut(s)	596
BshFI	GGCC	3 cut(s)	134, 443, 562
BsiSI	CCGG	1 cut(s)	240
BslI	CCNNNNNNNGG	2 cut(s)	87, 569
BsmAI	GTCTC	2 cut(s)	269, 479
BsmI	GAATGC	1 cut(s)	476
BsnI	GGCC	3 cut(s)	134, 443, 562
Bsp143I	GATC	4 cut(s)	106, 141, 174, 364
BspACI	CCGC	2 cut(s)	492, 612
BspANI	GGCC	3 cut(s)	134, 443, 562
BspLI	GGNNCC	1 cut(s)	133
BspTI	CTTAAG	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	245
BsrFI	RCCGGY	1 cut(s)	239
BsrI	ACTGG	1 cut(s)	49
BssAI	RCCGGY	1 cut(s)	239
BssECI	CCNNGG	1 cut(s)	557
BssMI	GATC	4 cut(s)	106, 141, 174, 364
Bst2UI	CCWGG	2 cut(s)	546, 558
Bst4CI	ACNGT	2 cut(s)	385, 408
Bst6I	CTCTTC	2 cut(s)	300, 595
BstAFI	CTTAAG	1 cut(s)	71
BstC8I	GCNNGC	4 cut(s)	237, 295, 299, 321
BstDEI	CTNAG	1 cut(s)	450
BstF5I	GGATG	1 cut(s)	581
BstKTI	GATC	4 cut(s)	109, 144, 177, 367
BstMAI	GTCTC	2 cut(s)	269, 479
BstMBI	GATC	4 cut(s)	106, 141, 174, 364
BstMWI	GCNNNNNNNGC	1 cut(s)	455
BstNI	CCWGG	2 cut(s)	546, 558
BstNSI	RCATGY	1 cut(s)	323
BstSCI	CCNGG	2 cut(s)	544, 556
BstSFI	CTRYAG	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	596
BstX2I	RGATCY	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	174
BsuI	GTATCC	1 cut(s)	175
BsuRI	GGCC	3 cut(s)	134, 443, 562
BtsCI	GGATG	1 cut(s)	581
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	105, 390
Cac8I	GCNNGC	4 cut(s)	237, 295, 299, 321
Cfr10I	RCCGGY	1 cut(s)	239
Cfr13I	GGNCC	2 cut(s)	132, 560
Csp6I	GTAC	2 cut(s)	243, 390
CviAII	CATG	5 cut(s)	60, 104, 320, 422, 436
CviQI	GTAC	2 cut(s)	243, 390
DdeI	CTNAG	1 cut(s)	450
DpnI	GATC	4 cut(s)	108, 143, 176, 366
DpnII	GATC	4 cut(s)	106, 141, 174, 364
Eam1104I	CTCTTC	2 cut(s)	300, 595
EarI	CTCTTC	2 cut(s)	300, 595
Eco147I	AGGCCT	1 cut(s)	443
Eco32I	GATATC	1 cut(s)	262
Eco57I	CTGAAG	1 cut(s)	155
EcoRII	CCWGG	2 cut(s)	544, 556
EcoRV	GATATC	1 cut(s)	262
EcoT22I	ATGCAT	1 cut(s)	583
FaeI	CATG	5 cut(s)	63, 107, 323, 425, 439
FatI	CATG	5 cut(s)	59, 103, 319, 421, 435
Fnu4HI	GCNGC	3 cut(s)	492, 610, 613
FokI	GGATG	1 cut(s)	568
Fsp4HI	GCNGC	3 cut(s)	492, 610, 613
FspBI	CTAG	3 cut(s)	290, 302, 414
GluI	GCNGC	3 cut(s)	492, 610, 613
GsuI	CTGGAG	2 cut(s)	66, 540
HaeIII	GGCC	3 cut(s)	134, 443, 562
HapII	CCGG	1 cut(s)	240
Hin1II	CATG	5 cut(s)	63, 107, 323, 425, 439
HinfI	GANTC	2 cut(s)	197, 511
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	3 cut(s)	50, 70, 103
Hpy166II	GTNNAC	1 cut(s)	78
Hpy188I	TCNGA	1 cut(s)	174
Hpy188III	TCNNGA	4 cut(s)	194, 368, 484, 515
Hpy8I	GTNNAC	1 cut(s)	78
Hpy99I	CGWCG	1 cut(s)	485
HpyAV	CCTTC	2 cut(s)	74, 392
HpyCH4III	ACNGT	2 cut(s)	385, 408
HpyCH4V	TGCA	3 cut(s)	103, 323, 581
HpyF10VI	GCNNNNNNNGC	1 cut(s)	455
HpyF3I	CTNAG	1 cut(s)	450
Hsp92II	CATG	5 cut(s)	63, 107, 323, 425, 439
Kzo9I	GATC	4 cut(s)	106, 141, 174, 364
LmnI	GCTCC	1 cut(s)	418
Lsp1109I	GCAGC	1 cut(s)	596
LweI	GCATC	2 cut(s)	568, 590
MaeI	CTAG	3 cut(s)	290, 302, 414
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	4 cut(s)	108, 143, 176, 366
MboI	GATC	4 cut(s)	106, 141, 174, 364
MboII	GAAGA	3 cut(s)	317, 383, 612
MflI	RGATCY	1 cut(s)	174
MluCI	AATT	1 cut(s)	125
Mph1103I	ATGCAT	1 cut(s)	583
MseI	TTAA	3 cut(s)	21, 72, 282
MslI	CAYNNNNRTG	1 cut(s)	324
MspA1I	CMGCKG	1 cut(s)	297
MspCI	CTTAAG	1 cut(s)	71
MspI	CCGG	1 cut(s)	240
MspR9I	CCNGG	2 cut(s)	546, 558
Mva1269I	GAATGC	1 cut(s)	476
MvaI	CCWGG	2 cut(s)	546, 558
MwoI	GCNNNNNNNGC	1 cut(s)	455
NdeII	GATC	4 cut(s)	106, 141, 174, 364
NlaIII	CATG	5 cut(s)	63, 107, 323, 425, 439
NlaIV	GGNNCC	1 cut(s)	133
NsiI	ATGCAT	1 cut(s)	583
NspI	RCATGY	1 cut(s)	323
PaeI	GCATGC	1 cut(s)	323
PceI	AGGCCT	1 cut(s)	443
PctI	GAATGC	1 cut(s)	476
PfeI	GAWTC	2 cut(s)	197, 511
PkrI	GCNGC	3 cut(s)	493, 611, 614
Psp6I	CCWGG	2 cut(s)	544, 556
PspGI	CCWGG	2 cut(s)	544, 556
PspN4I	GGNNCC	1 cut(s)	133
PspPI	GGNCC	2 cut(s)	132, 560
PsuI	RGATCY	1 cut(s)	174
PvuII	CAGCTG	1 cut(s)	297
RsaI	GTAC	2 cut(s)	244, 391
RsaNI	GTAC	2 cut(s)	243, 390
RseI	CAYNNNNRTG	1 cut(s)	324
SaqAI	TTAA	3 cut(s)	21, 72, 282
SatI	GCNGC	3 cut(s)	492, 610, 613
Sau3AI	GATC	4 cut(s)	106, 141, 174, 364
Sau96I	GGNCC	2 cut(s)	132, 560
ScrFI	CCNGG	2 cut(s)	546, 558
SetI	ASST	4 cut(s)	92, 209, 221, 299
SfaNI	GCATC	2 cut(s)	568, 590
SfcI	CTRYAG	1 cut(s)	226
SmiMI	CAYNNNNRTG	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SphI	GCATGC	1 cut(s)	323
Sse9I	AATT	1 cut(s)	125
SseBI	AGGCCT	1 cut(s)	443
SsiI	CCGC	2 cut(s)	492, 612
SspMI	CTAG	3 cut(s)	290, 302, 414
StuI	AGGCCT	1 cut(s)	443
StyD4I	CCNGG	2 cut(s)	544, 556
TaaI	ACNGT	2 cut(s)	385, 408
TaqI	TCGA	3 cut(s)	150, 468, 483
TasI	AATT	1 cut(s)	125
TatI	WGTACW	1 cut(s)	389
TauI	GCSGC	2 cut(s)	494, 615
TfiI	GAWTC	2 cut(s)	197, 511
Tru1I	TTAA	3 cut(s)	21, 72, 282
Tru9I	TTAA	3 cut(s)	21, 72, 282
TscAI	CASTG	2 cut(s)	105, 390
TseI	GCWGC	1 cut(s)	609
TspDTI	ATGAA	1 cut(s)	424
TspRI	CASTG	2 cut(s)	105, 390
Vha464I	CTTAAG	1 cut(s)	71
XapI	RAATTY	1 cut(s)	125
XceI	RCATGY	1 cut(s)	323
XspI	CTAG	3 cut(s)	290, 302, 414
Zsp2I	ATGCAT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.