Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005599

Physical Location & Seq

Genomic Coordinates Reverse (-)

146914 .. 149724

Gene Structure 2811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G001600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTCTTACGCGTATTTATTCAAGTACATCATCATCGGCGATACTGGAGTTGGAAAATCATGTCTTCTTCTTCAGTTTACCGACAAGAGGTTCCAGCCAGTGCACGATTTAACCATTGGTGTTGAGTTCGGAGCCAGGATGATCACCATCGACAACAAACCAATCAAGCTCCAAATTTGGGACACGGCGGGCCAAGAGTCTTTCAGATCCATTACACGGTCCTACTACAGAGGGGCTGCCGGTGCGTTGCTTGTGTATGACATCACCAGGAGGGAAACTTTTAATCACTTGGCTAGCTGGTTAGAGGACGCGAGGCAACATGCAAATGCAAACATGACAATAATGTTAATTGGTAATAAGTGTGATCTTGCTCACAGACGGGCTGTGAGTACTGAGGAAGGGGAACAGTTTGCAAAGGAGCATGGACTGATCTTTATGGAGGCCTCTGCTAAAACTGCTCAGAATGTTGAGGAGGCATTTATAAAAACTGCTGCAACCATATACAAGAAGATTCAAGATGGAGTTTTTGATGTATCAAATGAGTCTTATGGCATAAAAGTTGGATATGGTGGAATTCCGGGACCATCAGGAGGCAGAGATGGCTCTTCCTCTCAAGCTGGAGGCTGTTGCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005886 GO:0006810 GO:0006888 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0030100 GO:0031410 GO:0031982 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0048193 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060627 GO:0065007 GO:0071944 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04152 map04152

Pfam Domains

Protein Families

Ras

Protein Analysis

212

Amino Acids

23.19

Weight (kDa)

6.96

Isoelectric Point (pI)

39.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17160
fragaria_vesca	FvH4_3g00140
malus_domestica	MD05G1363800.v1.1 MD10G1341700.v1.1
prunus_persica	Prupe.4G001600_v2.0.a1 Prupe.4G001600_v2.0.a1 Prupe.4G001600_v2.0.a1
pyrus_communis	pycom05g32990 pycom10g29100
rosa_chinensis	RchiOBHm_Chr4g0425891 RchiOBHm_Chr5g0000191
rosa_laevigata	RLG00000018515 RLG00000030849
rosa_multiflora	Rmu_co8459821.1_g000001 Rmu_co8468425.1_g000001 Rmu_ssc0000243.1_g000011
rosa_roxburghii	Rroxscaffold_1G00075900 Rroxscaffold_2G00088190
rosa_rugosa	Rorug01G0341700 Rorug04G0382500
rosa_samantha	Rh2AG134900 Rh5CG001600 Rh5CG499000 Rh5DG001500 Rh6CG032700 Rh7DG362100
rosa_wichuraiana	Rw1G021010 Rw5G000180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	482
AccII	CGCG	2 cut(s)	11, 311
AciI	CCGC	1 cut(s)	188
AclWI	GGATC	1 cut(s)	201
AcsI	RAATTY	2 cut(s)	174, 573
AcuI	CTGAAG	1 cut(s)	56
AfaI	GTAC	2 cut(s)	26, 391
AfiI	CCNNNNNNNGG	4 cut(s)	87, 178, 216, 590
AflIII	ACRYGT	1 cut(s)	9
AgsI	TTSAA	2 cut(s)	22, 515
AjnI	CCWGG	2 cut(s)	134, 266
AluBI	AGCT	3 cut(s)	169, 297, 617
AluI	AGCT	3 cut(s)	169, 297, 617
Alw21I	GWGCWC	1 cut(s)	105
Alw44I	GTGCAC	1 cut(s)	101
AlwI	GGATC	1 cut(s)	201
AoxI	GGCC	2 cut(s)	190, 441
ApaLI	GTGCAC	1 cut(s)	101
ApeKI	GCWGC	2 cut(s)	236, 491
ApoI	RAATTY	2 cut(s)	174, 573
AspS9I	GGNCC	3 cut(s)	190, 219, 581
AsuC2I	CCSGG	1 cut(s)	579
AsuHPI	GGTGA	2 cut(s)	136, 256
AsuNHI	GCTAGC	1 cut(s)	293
AvaII	GGWCC	2 cut(s)	219, 581
BaeGI	GKGCMC	1 cut(s)	105
BaeI	ACNNNNGTAYC	2 cut(s)	33, 66
BbsI	GAAGAC	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	2 cut(s)	223, 478
BccI	CCATC	4 cut(s)	155, 512, 592, 593
BceAI	ACGGC	1 cut(s)	201
BciT130I	CCWGG	2 cut(s)	136, 268
BclI	TGATCA	1 cut(s)	141
BcnI	CCSGG	1 cut(s)	579
BfaI	CTAG	1 cut(s)	294
BfmI	CTRYAG	1 cut(s)	226
BisI	GCNGC	2 cut(s)	237, 492
BlsI	GCNGC	2 cut(s)	238, 493
BmcAI	AGTACT	1 cut(s)	391
Bme1390I	CCNGG	3 cut(s)	136, 268, 579
Bme18I	GGWCC	2 cut(s)	219, 581
BmgT120I	GGNCC	3 cut(s)	190, 219, 581
BmiI	GGNNCC	3 cut(s)	92, 133, 582
BmrFI	CCNGG	3 cut(s)	136, 268, 579
BmtI	GCTAGC	1 cut(s)	297
BpiI	GAAGAC	1 cut(s)	56
BpmI	CTGGAG	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	597
BpuMI	CCSGG	1 cut(s)	579
BsaBI	GATNNNNATC	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	4 cut(s)	87, 178, 216, 590
Bse118I	RCCGGY	1 cut(s)	239
Bse1I	ACTGG	2 cut(s)	49, 98
Bse8I	GATNNNNATC	1 cut(s)	146
BseBI	CCWGG	2 cut(s)	136, 268
BseGI	GGATG	1 cut(s)	144
BseJI	GATNNNNATC	1 cut(s)	146
BseLI	CCNNNNNNNGG	4 cut(s)	87, 178, 216, 590
BseMII	CTCAG	2 cut(s)	384, 473
BseNI	ACTGG	2 cut(s)	49, 98
BseRI	GAGGAG	1 cut(s)	485
BseSI	GKGCMC	1 cut(s)	105
BseXI	GCAGC	2 cut(s)	223, 478
Bsh1236I	CGCG	2 cut(s)	11, 311
BshFI	GGCC	2 cut(s)	192, 443
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	2 cut(s)	240, 578
BslFI	GGGAC	2 cut(s)	194, 594
BslI	CCNNNNNNNGG	4 cut(s)	87, 178, 216, 590
BsmFI	GGGAC	2 cut(s)	194, 594
BsnI	GGCC	2 cut(s)	192, 443
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	4 cut(s)	141, 206, 364, 429
BspACI	CCGC	1 cut(s)	188
BspANI	GGCC	2 cut(s)	192, 443
BspCNI	CTCAG	2 cut(s)	385, 472
BspFNI	CGCG	2 cut(s)	11, 311
BspLI	GGNNCC	3 cut(s)	92, 133, 582
BspOI	GCTAGC	1 cut(s)	297
BspPI	GGATC	1 cut(s)	201
BspQI	GCTCTTC	1 cut(s)	610
BsrFI	RCCGGY	1 cut(s)	239
BsrI	ACTGG	2 cut(s)	49, 98
BssAI	RCCGGY	1 cut(s)	239
BssMI	GATC	4 cut(s)	141, 206, 364, 429
Bst2UI	CCWGG	2 cut(s)	136, 268
Bst4CI	ACNGT	2 cut(s)	219, 408
Bst6I	CTCTTC	1 cut(s)	610
BstC8I	GCNNGC	2 cut(s)	190, 295
BstDEI	CTNAG	2 cut(s)	393, 459
BstF5I	GGATG	1 cut(s)	144
BstFNI	CGCG	2 cut(s)	11, 311
BstKTI	GATC	4 cut(s)	144, 209, 367, 432
BstMBI	GATC	4 cut(s)	141, 206, 364, 429
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 455, 600
BstNI	CCWGG	2 cut(s)	136, 268
BstNSI	RCATGY	1 cut(s)	323
BstSCI	CCNGG	3 cut(s)	134, 266, 577
BstSFI	CTRYAG	1 cut(s)	226
BstSLI	GKGCMC	1 cut(s)	105
BstUI	CGCG	2 cut(s)	11, 311
BstV1I	GCAGC	2 cut(s)	223, 478
BstV2I	GAAGAC	1 cut(s)	56
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
BsuRI	GGCC	2 cut(s)	192, 443
BtsCI	GGATG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	105
Cac8I	GCNNGC	2 cut(s)	190, 295
Cfr10I	RCCGGY	1 cut(s)	239
Cfr13I	GGNCC	3 cut(s)	190, 219, 581
CseI	GACGC	1 cut(s)	317
Csp6I	GTAC	2 cut(s)	25, 390
CviAII	CATG	4 cut(s)	60, 320, 334, 422
CviQI	GTAC	2 cut(s)	25, 390
DdeI	CTNAG	2 cut(s)	393, 459
DpnI	GATC	4 cut(s)	143, 208, 366, 431
DpnII	GATC	4 cut(s)	141, 206, 364, 429
Eam1104I	CTCTTC	1 cut(s)	610
EarI	CTCTTC	1 cut(s)	610
Eco147I	AGGCCT	1 cut(s)	443
Eco47I	GGWCC	2 cut(s)	219, 581
Eco57I	CTGAAG	1 cut(s)	56
EcoRI	GAATTC	1 cut(s)	573
EcoRII	CCWGG	2 cut(s)	134, 266
FaeI	CATG	4 cut(s)	63, 323, 337, 425
FaqI	GGGAC	2 cut(s)	194, 594
FatI	CATG	4 cut(s)	59, 319, 333, 421
FauI	CCCGC	1 cut(s)	181
FbaI	TGATCA	1 cut(s)	141
Fnu4HI	GCNGC	2 cut(s)	237, 492
FokI	GGATG	1 cut(s)	151
Fsp4HI	GCNGC	2 cut(s)	237, 492
FspBI	CTAG	1 cut(s)	294
GluI	GCNGC	2 cut(s)	237, 492
GsuI	CTGGAG	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	192, 443
HapII	CCGG	2 cut(s)	240, 578
HgaI	GACGC	1 cut(s)	317
Hin1II	CATG	4 cut(s)	63, 323, 337, 425
HinfI	GANTC	3 cut(s)	197, 511, 542
HpaII	CCGG	2 cut(s)	240, 578
HphI	GGTGA	2 cut(s)	136, 256
Hpy166II	GTNNAC	2 cut(s)	78, 103
Hpy188I	TCNGA	3 cut(s)	131, 206, 462
Hpy188III	TCNNGA	2 cut(s)	515, 588
Hpy8I	GTNNAC	2 cut(s)	78, 103
HpyAV	CCTTC	1 cut(s)	392
HpyCH4III	ACNGT	2 cut(s)	219, 408
HpyCH4V	TGCA	6 cut(s)	103, 323, 329, 413, 494, 630
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 455, 600
HpyF3I	CTNAG	2 cut(s)	393, 459
Hsp92II	CATG	4 cut(s)	63, 323, 337, 425
Ksp22I	TGATCA	1 cut(s)	141
Kzo9I	GATC	4 cut(s)	141, 206, 364, 429
LguI	GCTCTTC	1 cut(s)	610
LmnI	GCTCC	3 cut(s)	131, 174, 418
Lsp1109I	GCAGC	2 cut(s)	223, 478
MaeI	CTAG	1 cut(s)	294
MalI	GATC	4 cut(s)	143, 208, 366, 431
MboI	GATC	4 cut(s)	141, 206, 364, 429
MboII	GAAGA	5 cut(s)	56, 59, 62, 520, 597
MflI	RGATCY	1 cut(s)	206
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	3 cut(s)	174, 348, 573
MluI	ACGCGT	1 cut(s)	9
MlyI	GAGTC	2 cut(s)	206, 551
MmeI	TCCRAC	2 cut(s)	31, 541
MseI	TTAA	3 cut(s)	110, 282, 347
MslI	CAYNNNNRTG	1 cut(s)	324
MspI	CCGG	2 cut(s)	240, 578
MspR9I	CCNGG	3 cut(s)	136, 268, 579
MvaI	CCWGG	2 cut(s)	136, 268
MvnI	CGCG	2 cut(s)	11, 311
MwoI	GCNNNNNNNGC	3 cut(s)	242, 455, 600
NciI	CCSGG	1 cut(s)	579
NdeII	GATC	4 cut(s)	141, 206, 364, 429
NheI	GCTAGC	1 cut(s)	293
NlaIII	CATG	4 cut(s)	63, 323, 337, 425
NlaIV	GGNNCC	3 cut(s)	92, 133, 582
NspI	RCATGY	1 cut(s)	323
PceI	AGGCCT	1 cut(s)	443
PciSI	GCTCTTC	1 cut(s)	610
PfeI	GAWTC	1 cut(s)	511
PfoI	TCCNGGA	1 cut(s)	577
PkrI	GCNGC	2 cut(s)	238, 493
PleI	GAGTC	2 cut(s)	205, 550
PpsI	GAGTC	2 cut(s)	205, 550
PsiI	TTATAA	1 cut(s)	482
Psp6I	CCWGG	2 cut(s)	134, 266
PspGI	CCWGG	2 cut(s)	134, 266
PspN4I	GGNNCC	3 cut(s)	92, 133, 582
PspPI	GGNCC	3 cut(s)	190, 219, 581
PsuI	RGATCY	1 cut(s)	206
RsaI	GTAC	2 cut(s)	26, 391
RsaNI	GTAC	2 cut(s)	25, 390
RseI	CAYNNNNRTG	1 cut(s)	324
SapI	GCTCTTC	1 cut(s)	610
SaqAI	TTAA	3 cut(s)	110, 282, 347
SatI	GCNGC	2 cut(s)	237, 492
Sau3AI	GATC	4 cut(s)	141, 206, 364, 429
Sau96I	GGNCC	3 cut(s)	190, 219, 581
ScaI	AGTACT	1 cut(s)	391
SchI	GAGTC	2 cut(s)	206, 551
ScrFI	CCNGG	3 cut(s)	136, 268, 579
SduI	GDGCHC	1 cut(s)	105
SetI	ASST	4 cut(s)	92, 171, 299, 619
SfcI	CTRYAG	1 cut(s)	226
SinI	GGWCC	2 cut(s)	219, 581
SmiMI	CAYNNNNRTG	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	612
SmoI	CTYRAG	1 cut(s)	612
Sse9I	AATT	3 cut(s)	174, 348, 573
SseBI	AGGCCT	1 cut(s)	443
SsiI	CCGC	1 cut(s)	188
SspMI	CTAG	1 cut(s)	294
StuI	AGGCCT	1 cut(s)	443
StyD4I	CCNGG	3 cut(s)	134, 266, 577
TaaI	ACNGT	2 cut(s)	219, 408
TaqI	TCGA	1 cut(s)	150
TasI	AATT	3 cut(s)	174, 348, 573
TatI	WGTACW	2 cut(s)	24, 389
TfiI	GAWTC	1 cut(s)	511
Tru1I	TTAA	3 cut(s)	110, 282, 347
Tru9I	TTAA	3 cut(s)	110, 282, 347
TscAI	CASTG	1 cut(s)	105
TseI	GCWGC	2 cut(s)	236, 491
TspRI	CASTG	1 cut(s)	105
VneI	GTGCAC	1 cut(s)	101
VpaK11BI	GGWCC	2 cut(s)	219, 581
XapI	RAATTY	2 cut(s)	174, 573
XceI	RCATGY	1 cut(s)	323
XspI	CTAG	1 cut(s)	294
ZrmI	AGTACT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.