Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0005599

Physical Location & Seq

Genomic Coordinates Reverse (-)

3024942 .. 3028546

Gene Structure 3605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG032700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGATCACCATTGATAACAAACCAATCAAGATTCAAATTTGGGACACGGCTGGTCAAGAGTCATTCAGATCCATTACACGATCCTACTATAGAGGAGCTGCTGGCGCTTTGCTTGTCTATGACATCACCAGGAGAGAAACTTTTAATCAATTGGCTAGCCGGCTTGAGGATGAGAGGCACCATGCAAATGCAAACATGACCATAATGTTAATTGGTAATAAGTGTGATCTTACTCATAGACGAGCTGTGAGCACAGAGGAAGGGGAGCAATTTGCAAAGGAACATGGATTGATCTTCATGGAGGCCTCTGCTAAAACTGCTCAGAATGTTGAGGAGGCATTCATAAAAACCGCTGCAACCATATACAAGAAGATTCAAGATGGCGTTTTTGATGTATCAAATGAGGTACTACTAATTGTGCGTTTTCTCCAGCATGAGTATCATCTTGGCCGACCTTTCTACCAAGAATGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko04152 map04152

Pfam Domains

Protein Families

Ras

Protein Analysis

158

Amino Acids

18.2

Weight (kDa)

6.3

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	2 - 122	1.8e-44	Ras family
Arf	PF00025	3 - 114	7.1e-10	ADP-ribosylation factor family
Roc	PF08477	6 - 76	8.1e-17	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17160
fragaria_vesca	FvH4_3g00140
malus_domestica	MD05G1363800.v1.1 MD10G1341700.v1.1
prunus_persica	Prupe.4G001600_v2.0.a1 Prupe.4G001600_v2.0.a1 Prupe.4G001600_v2.0.a1
pyrus_communis	pycom05g32990 pycom10g29100
rosa_chinensis	RchiOBHm_Chr4g0425891 RchiOBHm_Chr5g0000191
rosa_laevigata	RLG00000018515 RLG00000030849
rosa_multiflora	Rmu_co8459821.1_g000001 Rmu_co8468425.1_g000001 Rmu_ssc0000243.1_g000011
rosa_roxburghii	Rroxscaffold_1G00075900 Rroxscaffold_2G00088190
rosa_rugosa	Rorug01G0341700 Rorug04G0382500
rosa_samantha	Rh2AG134900 Rh5CG001600 Rh5CG499000 Rh5DG001500 Rh6CG032700 Rh7DG362100
rosa_wichuraiana	Rw1G021010 Rw5G000180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	177
AciI	CCGC	1 cut(s)	351
AclWI	GGATC	2 cut(s)	63, 75
AcoI	YGGCCR	1 cut(s)	448
AcsI	RAATTY	1 cut(s)	36
AfaI	GTAC	1 cut(s)	408
AfiI	CCNNNNNNNGG	1 cut(s)	166
AgsI	TTSAA	2 cut(s)	35, 377
AjnI	CCWGG	1 cut(s)	128
AluBI	AGCT	2 cut(s)	98, 245
AluI	AGCT	2 cut(s)	98, 245
Alw21I	GWGCWC	1 cut(s)	254
AlwI	GGATC	2 cut(s)	63, 75
AoxI	GGCC	2 cut(s)	303, 448
ApeKI	GCWGC	2 cut(s)	98, 353
ApoI	RAATTY	1 cut(s)	36
AspLEI	GCGC	1 cut(s)	107
AsuHPI	GGTGA	1 cut(s)	118
AsuNHI	GCTAGC	1 cut(s)	155
BanI	GGYRCC	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	254
BbvI	GCAGC	2 cut(s)	85, 340
BccI	CCATC	1 cut(s)	374
BceAI	ACGGC	1 cut(s)	63
BciT130I	CCWGG	1 cut(s)	130
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	1 cut(s)	156
BfmI	CTRYAG	1 cut(s)	88
BfoI	RGCGCY	1 cut(s)	108
BisI	GCNGC	2 cut(s)	99, 354
BlsI	GCNGC	2 cut(s)	100, 355
Bme1390I	CCNGG	1 cut(s)	130
BmiI	GGNNCC	1 cut(s)	179
BmrFI	CCNGG	1 cut(s)	130
BmtI	GCTAGC	1 cut(s)	159
BpmI	CTGGAG	1 cut(s)	413
BpuEI	CTTGAG	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse118I	RCCGGY	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	130
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMII	CTCAG	1 cut(s)	335
BseRI	GAGGAG	2 cut(s)	108, 347
BseXI	GCAGC	2 cut(s)	85, 340
BshFI	GGCC	2 cut(s)	305, 450
BshNI	GGYRCC	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	254
BsiSI	CCGG	1 cut(s)	160
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	56
BsmI	GAATGC	1 cut(s)	338
BsnI	GGCC	2 cut(s)	305, 450
Bsp1286I	GDGCHC	1 cut(s)	254
Bsp143I	GATC	5 cut(s)	3, 68, 80, 226, 291
BspACI	CCGC	1 cut(s)	351
BspANI	GGCC	2 cut(s)	305, 450
BspCNI	CTCAG	1 cut(s)	334
BspLI	GGNNCC	1 cut(s)	179
BspOI	GCTAGC	1 cut(s)	159
BspPI	GGATC	2 cut(s)	63, 75
BspT107I	GGYRCC	1 cut(s)	177
BsrFI	RCCGGY	1 cut(s)	159
BssAI	RCCGGY	1 cut(s)	159
BssMI	GATC	5 cut(s)	3, 68, 80, 226, 291
Bst2UI	CCWGG	1 cut(s)	130
BstC8I	GCNNGC	3 cut(s)	103, 157, 161
BstDEI	CTNAG	1 cut(s)	321
BstF5I	GGATG	1 cut(s)	175
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	5 cut(s)	6, 71, 83, 229, 294
BstMBI	GATC	5 cut(s)	3, 68, 80, 226, 291
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 317
BstNI	CCWGG	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	128
BstSFI	CTRYAG	1 cut(s)	88
BstV1I	GCAGC	2 cut(s)	85, 340
BstX2I	RGATCY	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	68
BsuRI	GGCC	2 cut(s)	305, 450
BtsCI	GGATG	1 cut(s)	175
Cac8I	GCNNGC	3 cut(s)	103, 157, 161
CfoI	GCGC	1 cut(s)	107
Cfr10I	RCCGGY	1 cut(s)	159
Csp6I	GTAC	1 cut(s)	407
CviAII	CATG	5 cut(s)	182, 196, 284, 298, 434
CviJI	RGCY	8 cut(s)	50, 98, 155, 159, 163, 245, 305, 450
CviKI_1	RGCY	8 cut(s)	50, 98, 155, 159, 163, 245, 305, 450
CviQI	GTAC	1 cut(s)	407
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	5 cut(s)	5, 70, 82, 228, 293
DpnII	GATC	5 cut(s)	3, 68, 80, 226, 291
EaeI	YGGCCR	1 cut(s)	448
Eco147I	AGGCCT	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	128
FaeI	CATG	5 cut(s)	185, 199, 287, 301, 437
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	5 cut(s)	181, 195, 283, 297, 433
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	99, 354
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	2 cut(s)	99, 354
FspBI	CTAG	1 cut(s)	156
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	2 cut(s)	99, 354
GsuI	CTGGAG	1 cut(s)	413
HaeII	RGCGCY	1 cut(s)	108
HaeIII	GGCC	2 cut(s)	305, 450
HapII	CCGG	1 cut(s)	160
HhaI	GCGC	1 cut(s)	107
Hin1II	CATG	5 cut(s)	185, 199, 287, 301, 437
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HinfI	GANTC	3 cut(s)	31, 59, 373
HpaII	CCGG	1 cut(s)	160
HphI	GGTGA	1 cut(s)	118
Hpy188I	TCNGA	2 cut(s)	68, 324
Hpy188III	TCNNGA	3 cut(s)	28, 56, 377
HpyAV	CCTTC	1 cut(s)	254
HpyCH4V	TGCA	4 cut(s)	185, 191, 275, 356
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 317
HpyF3I	CTNAG	1 cut(s)	321
Hsp92II	CATG	5 cut(s)	185, 199, 287, 301, 437
HspAI	GCGC	1 cut(s)	105
KroI	GCCGGC	1 cut(s)	159
KroNI	GCCGGC	1 cut(s)	161
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	5 cut(s)	3, 68, 80, 226, 291
LmnI	GCTCC	2 cut(s)	95, 265
LpnPI	CCDG	6 cut(s)	36, 87, 115, 142, 173, 443
Lsp1109I	GCAGC	2 cut(s)	85, 340
MaeI	CTAG	1 cut(s)	156
MalI	GATC	5 cut(s)	5, 70, 82, 228, 293
MboI	GATC	5 cut(s)	3, 68, 80, 226, 291
MboII	GAAGA	2 cut(s)	286, 382
MfeI	CAATTG	1 cut(s)	149
MflI	RGATCY	1 cut(s)	68
MhlI	GDGCHC	1 cut(s)	254
MluCI	AATT	5 cut(s)	36, 149, 210, 269, 414
MlyI	GAGTC	1 cut(s)	68
MnlI	CCTC	9 cut(s)	86, 160, 168, 250, 295, 316, 325, 328, 397
MroNI	GCCGGC	1 cut(s)	159
MseI	TTAA	2 cut(s)	144, 209
MslI	CAYNNNNRTG	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	353
MspI	CCGG	1 cut(s)	160
MspR9I	CCNGG	1 cut(s)	130
MunI	CAATTG	1 cut(s)	149
Mva1269I	GAATGC	1 cut(s)	338
MvaI	CCWGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	2 cut(s)	104, 317
NaeI	GCCGGC	1 cut(s)	161
NdeII	GATC	5 cut(s)	3, 68, 80, 226, 291
NgoMIV	GCCGGC	1 cut(s)	159
NheI	GCTAGC	1 cut(s)	155
NlaIII	CATG	5 cut(s)	185, 199, 287, 301, 437
NlaIV	GGNNCC	1 cut(s)	179
PceI	AGGCCT	1 cut(s)	305
PctI	GAATGC	1 cut(s)	338
PdiI	GCCGGC	1 cut(s)	161
PfeI	GAWTC	2 cut(s)	31, 373
PkrI	GCNGC	2 cut(s)	100, 355
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	179
PsuI	RGATCY	1 cut(s)	68
RsaI	GTAC	1 cut(s)	408
RsaNI	GTAC	1 cut(s)	407
RseI	CAYNNNNRTG	1 cut(s)	186
SaqAI	TTAA	2 cut(s)	144, 209
SatI	GCNGC	2 cut(s)	99, 354
Sau3AI	GATC	5 cut(s)	3, 68, 80, 226, 291
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	254
SetI	ASST	4 cut(s)	100, 247, 408, 457
SfcI	CTRYAG	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	5 cut(s)	36, 149, 210, 269, 414
SseBI	AGGCCT	1 cut(s)	305
SsiI	CCGC	1 cut(s)	351
SspMI	CTAG	1 cut(s)	156
StuI	AGGCCT	1 cut(s)	305
StyD4I	CCNGG	1 cut(s)	128
TasI	AATT	5 cut(s)	36, 149, 210, 269, 414
TfiI	GAWTC	2 cut(s)	31, 373
Tru1I	TTAA	2 cut(s)	144, 209
Tru9I	TTAA	2 cut(s)	144, 209
TseI	GCWGC	2 cut(s)	98, 353
TspDTI	ATGAA	2 cut(s)	286, 331
XapI	RAATTY	1 cut(s)	36
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.