Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0005599

Physical Location & Seq

Genomic Coordinates Reverse (-)

32175110 .. 32176873

Gene Structure 1764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g32990.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGATCACCATCGACAACAAACCTATCAAGCTCCAAATCTGGGACACGGCTGGCCAAGAGTCTTTCAGATCCATAACACGGTCCTACTATAGAGGGGCAGCTGGTGCCTTGCTTGTCTATGACATCACCAGGAGGGAAACTTTTAATCACTTGGCTAGCTGGTTGGAGGACGCGAGGCAACACGCAAATGCAAACATGACAATTATGCTCATTGGTAATAAGTGCGATCTAGCTCACAGACGGGCTGTGAGCACAGAGGAAGGGGAGCAGTTTGCAAAGGAGCACGGCTTGATCTTCATGGAGGCGTCTGCTAAAACTGCTCAGAATGTTGAGGAGGCATTTATAAAAACTGCTGCAACCATATACAAAAAGATTCAAGATGGAGTGTTTGATGTATCAAATGAGTCTTATGGCATAAAAGTTGGATATGGTGGAATTCCAGGACCATCAGGAGGCAGAGATGGCGCTTCCTCTCAAGCTGGAGGCTGTTGTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005886 GO:0006810 GO:0006888 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0030100 GO:0031410 GO:0031982 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0048193 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060627 GO:0065007 GO:0071944 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04152 map04152

Pfam Domains

Protein Families

Ras

Protein Analysis

166

Amino Acids

17.98

Weight (kDa)

6.42

Isoelectric Point (pI)

37.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17160
fragaria_vesca	FvH4_3g00140
malus_domestica	MD05G1363800.v1.1 MD10G1341700.v1.1
prunus_persica	Prupe.4G001600_v2.0.a1 Prupe.4G001600_v2.0.a1 Prupe.4G001600_v2.0.a1
pyrus_communis	pycom05g32990 pycom10g29100
rosa_chinensis	RchiOBHm_Chr4g0425891 RchiOBHm_Chr5g0000191
rosa_laevigata	RLG00000018515 RLG00000030849
rosa_multiflora	Rmu_co8459821.1_g000001 Rmu_co8468425.1_g000001 Rmu_ssc0000243.1_g000011
rosa_roxburghii	Rroxscaffold_1G00075900 Rroxscaffold_2G00088190
rosa_rugosa	Rorug01G0341700 Rorug04G0382500
rosa_samantha	Rh2AG134900 Rh5CG001600 Rh5CG499000 Rh5DG001500 Rh6CG032700 Rh7DG362100
rosa_wichuraiana	Rw1G021010 Rw5G000180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	344
AccB1I	GGYRCC	1 cut(s)	104
AccII	CGCG	1 cut(s)	173
AclWI	GGATC	1 cut(s)	63
AcoI	YGGCCR	1 cut(s)	52
AcsI	RAATTY	1 cut(s)	435
AcyI	GRCGYC	1 cut(s)	305
AfiI	CCNNNNNNNGG	3 cut(s)	40, 78, 452
AgsI	TTSAA	1 cut(s)	377
AjnI	CCWGG	2 cut(s)	128, 439
AluBI	AGCT	5 cut(s)	31, 101, 159, 233, 479
AluI	AGCT	5 cut(s)	31, 101, 159, 233, 479
Alw21I	GWGCWC	2 cut(s)	254, 285
AlwI	GGATC	1 cut(s)	63
AoxI	GGCC	1 cut(s)	52
ApeKI	GCWGC	2 cut(s)	98, 353
ApoI	RAATTY	1 cut(s)	435
AspLEI	GCGC	1 cut(s)	467
AspS9I	GGNCC	2 cut(s)	81, 443
AsuHPI	GGTGA	1 cut(s)	118
AsuNHI	GCTAGC	1 cut(s)	155
AvaII	GGWCC	2 cut(s)	81, 443
BalI	TGGCCA	1 cut(s)	54
BanI	GGYRCC	1 cut(s)	104
Bbv12I	GWGCWC	2 cut(s)	254, 285
BbvI	GCAGC	2 cut(s)	110, 340
BccI	CCATC	4 cut(s)	17, 374, 454, 455
BceAI	ACGGC	2 cut(s)	63, 301
BciT130I	CCWGG	2 cut(s)	130, 441
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	2 cut(s)	156, 230
BfmI	CTRYAG	1 cut(s)	88
BfoI	RGCGCY	1 cut(s)	468
BisI	GCNGC	2 cut(s)	99, 354
BlsI	GCNGC	2 cut(s)	100, 355
Bme1390I	CCNGG	2 cut(s)	130, 441
Bme18I	GGWCC	2 cut(s)	81, 443
BmgT120I	GGNCC	2 cut(s)	81, 443
BmiI	GGNNCC	1 cut(s)	106
BmrFI	CCNGG	2 cut(s)	130, 441
BmtI	GCTAGC	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	459
BsaBI	GATNNNNATC	1 cut(s)	8
BsaHI	GRCGYC	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 78, 452
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	2 cut(s)	130, 441
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	3 cut(s)	40, 78, 452
BseMII	CTCAG	1 cut(s)	335
BseRI	GAGGAG	1 cut(s)	347
BseXI	GCAGC	2 cut(s)	110, 340
Bsh1236I	CGCG	1 cut(s)	173
BshFI	GGCC	1 cut(s)	54
BshNI	GGYRCC	1 cut(s)	104
BsiHKAI	GWGCWC	2 cut(s)	254, 285
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	3 cut(s)	40, 78, 452
BsmFI	GGGAC	1 cut(s)	56
BsnI	GGCC	1 cut(s)	54
Bsp1286I	GDGCHC	2 cut(s)	254, 285
Bsp143I	GATC	4 cut(s)	3, 68, 226, 291
BspANI	GGCC	1 cut(s)	54
BspCNI	CTCAG	1 cut(s)	334
BspFNI	CGCG	1 cut(s)	173
BspLI	GGNNCC	1 cut(s)	106
BspOI	GCTAGC	1 cut(s)	159
BspPI	GGATC	1 cut(s)	63
BspT107I	GGYRCC	1 cut(s)	104
BssMI	GATC	4 cut(s)	3, 68, 226, 291
BssNI	GRCGYC	1 cut(s)	305
Bst2UI	CCWGG	2 cut(s)	130, 441
Bst4CI	ACNGT	1 cut(s)	81
BstACI	GRCGYC	1 cut(s)	305
BstAPI	GCANNNNNTGC	1 cut(s)	104
BstC8I	GCNNGC	2 cut(s)	52, 157
BstDEI	CTNAG	1 cut(s)	321
BstFNI	CGCG	1 cut(s)	173
BstH2I	RGCGCY	1 cut(s)	468
BstHHI	GCGC	1 cut(s)	467
BstKTI	GATC	4 cut(s)	6, 71, 229, 294
BstMBI	GATC	4 cut(s)	3, 68, 226, 291
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 317, 462
BstNI	CCWGG	2 cut(s)	130, 441
BstSCI	CCNGG	2 cut(s)	128, 439
BstSFI	CTRYAG	1 cut(s)	88
BstUI	CGCG	1 cut(s)	173
BstV1I	GCAGC	2 cut(s)	110, 340
BstX2I	RGATCY	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	68
BsuRI	GGCC	1 cut(s)	54
Cac8I	GCNNGC	2 cut(s)	52, 157
CfoI	GCGC	1 cut(s)	467
Cfr13I	GGNCC	2 cut(s)	81, 443
CseI	GACGC	2 cut(s)	179, 294
CviAII	CATG	2 cut(s)	196, 298
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	4 cut(s)	5, 70, 228, 293
DpnII	GATC	4 cut(s)	3, 68, 226, 291
EaeI	YGGCCR	1 cut(s)	52
Eco47I	GGWCC	2 cut(s)	81, 443
EcoRI	GAATTC	1 cut(s)	435
EcoRII	CCWGG	2 cut(s)	128, 439
FaeI	CATG	2 cut(s)	199, 301
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	2 cut(s)	195, 297
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	99, 354
Fsp4HI	GCNGC	2 cut(s)	99, 354
FspBI	CTAG	2 cut(s)	156, 230
GlaI	GCGC	1 cut(s)	466
GluI	GCNGC	2 cut(s)	99, 354
HaeII	RGCGCY	1 cut(s)	468
HaeIII	GGCC	1 cut(s)	54
HgaI	GACGC	2 cut(s)	179, 294
HhaI	GCGC	1 cut(s)	467
Hin1I	GRCGYC	1 cut(s)	305
Hin1II	CATG	2 cut(s)	199, 301
Hin6I	GCGC	1 cut(s)	465
HinP1I	GCGC	1 cut(s)	465
HinfI	GANTC	3 cut(s)	59, 373, 404
HphI	GGTGA	1 cut(s)	118
Hpy188I	TCNGA	2 cut(s)	68, 324
Hpy188III	TCNNGA	2 cut(s)	377, 450
HpyAV	CCTTC	1 cut(s)	254
HpyCH4III	ACNGT	1 cut(s)	81
HpyCH4V	TGCA	3 cut(s)	191, 275, 356
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 317, 462
HpyF3I	CTNAG	1 cut(s)	321
Hsp92I	GRCGYC	1 cut(s)	305
Hsp92II	CATG	2 cut(s)	199, 301
HspAI	GCGC	1 cut(s)	465
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 68, 226, 291
LmnI	GCTCC	3 cut(s)	36, 265, 280
Lsp1109I	GCAGC	2 cut(s)	110, 340
MaeI	CTAG	2 cut(s)	156, 230
MalI	GATC	4 cut(s)	5, 70, 228, 293
MboI	GATC	4 cut(s)	3, 68, 226, 291
MboII	GAAGA	1 cut(s)	286
MflI	RGATCY	1 cut(s)	68
MhlI	GDGCHC	2 cut(s)	254, 285
MlsI	TGGCCA	1 cut(s)	54
MluCI	AATT	2 cut(s)	201, 435
MluNI	TGGCCA	1 cut(s)	54
MlyI	GAGTC	2 cut(s)	68, 413
MmeI	TCCRAC	2 cut(s)	144, 403
Mox20I	TGGCCA	1 cut(s)	54
MscI	TGGCCA	1 cut(s)	54
MseI	TTAA	1 cut(s)	144
MslI	CAYNNNNRTG	1 cut(s)	186
Msp20I	TGGCCA	1 cut(s)	54
MspA1I	CMGCKG	1 cut(s)	101
MspR9I	CCNGG	2 cut(s)	130, 441
MvaI	CCWGG	2 cut(s)	130, 441
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	3 cut(s)	104, 317, 462
NdeII	GATC	4 cut(s)	3, 68, 226, 291
NheI	GCTAGC	1 cut(s)	155
NlaIII	CATG	2 cut(s)	199, 301
NlaIV	GGNNCC	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	373
PfoI	TCCNGGA	1 cut(s)	439
PkrI	GCNGC	2 cut(s)	100, 355
PleI	GAGTC	2 cut(s)	67, 412
PpsI	GAGTC	2 cut(s)	67, 412
PsiI	TTATAA	1 cut(s)	344
Psp6I	CCWGG	2 cut(s)	128, 439
PspGI	CCWGG	2 cut(s)	128, 439
PspN4I	GGNNCC	1 cut(s)	106
PspPI	GGNCC	2 cut(s)	81, 443
PsuI	RGATCY	1 cut(s)	68
PvuII	CAGCTG	1 cut(s)	101
RseI	CAYNNNNRTG	1 cut(s)	186
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	2 cut(s)	99, 354
Sau3AI	GATC	4 cut(s)	3, 68, 226, 291
Sau96I	GGNCC	2 cut(s)	81, 443
SchI	GAGTC	2 cut(s)	68, 413
ScrFI	CCNGG	2 cut(s)	130, 441
SduI	GDGCHC	2 cut(s)	254, 285
SetI	ASST	6 cut(s)	25, 33, 103, 161, 235, 481
SfcI	CTRYAG	1 cut(s)	88
SinI	GGWCC	2 cut(s)	81, 443
SmiMI	CAYNNNNRTG	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	474
SmoI	CTYRAG	1 cut(s)	474
Sse9I	AATT	2 cut(s)	201, 435
SspMI	CTAG	2 cut(s)	156, 230
StyD4I	CCNGG	2 cut(s)	128, 439
TaaI	ACNGT	1 cut(s)	81
TaqI	TCGA	1 cut(s)	12
TasI	AATT	2 cut(s)	201, 435
TfiI	GAWTC	1 cut(s)	373
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TseI	GCWGC	2 cut(s)	98, 353
TspDTI	ATGAA	1 cut(s)	286
VpaK11BI	GGWCC	2 cut(s)	81, 443
XapI	RAATTY	1 cut(s)	435
XspI	CTAG	2 cut(s)	156, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.