Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005599

Physical Location & Seq

Genomic Coordinates Reverse (-)

10211465 .. 10218763

Gene Structure 7299 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00088190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGACCATAATGTTAATTGGTAATAAGGGTGATCTTACTCATGGACGAGCTGTGAGCACAGAGGAAGGGGAGCAATTTGCAAAGGAACATGGATTGATCTTCATGGAGGCCTCTGCTAAAACTGCTCAGAACGTTGAGGAGGCATTCATAAAAACCGCTGCAACCATATACAAGAAGATTCAAGATGGCTTTTTTGATGTATCAAATGAGGACGATGACGGGTTTTGGCTCACACCGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005886 GO:0006810 GO:0006888 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0030100 GO:0031410 GO:0031982 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0048193 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060627 GO:0065007 GO:0071944 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04152 map04152

Pfam Domains

Protein Families

Ras

Protein Analysis

80

Amino Acids

8.86

Weight (kDa)

4.55

Isoelectric Point (pI)

22.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	2 - 57	3e-16	Ras family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17160
fragaria_vesca	FvH4_3g00140
malus_domestica	MD05G1363800.v1.1 MD10G1341700.v1.1
prunus_persica	Prupe.4G001600_v2.0.a1 Prupe.4G001600_v2.0.a1 Prupe.4G001600_v2.0.a1
pyrus_communis	pycom05g32990 pycom10g29100
rosa_chinensis	RchiOBHm_Chr4g0425891 RchiOBHm_Chr5g0000191
rosa_laevigata	RLG00000018515 RLG00000030849
rosa_multiflora	Rmu_co8459821.1_g000001 Rmu_co8468425.1_g000001 Rmu_ssc0000243.1_g000011
rosa_roxburghii	Rroxscaffold_1G00075900 Rroxscaffold_2G00088190
rosa_rugosa	Rorug01G0341700 Rorug04G0382500
rosa_samantha	Rh2AG134900 Rh5CG001600 Rh5CG499000 Rh5DG001500 Rh6CG032700 Rh7DG362100
rosa_wichuraiana	Rw1G021010 Rw5G000180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	156
AclI	AACGTT	1 cut(s)	132
AdeI	CACNNNGTG	1 cut(s)	237
AgsI	TTSAA	1 cut(s)	182
AluBI	AGCT	1 cut(s)	50
AluI	AGCT	1 cut(s)	50
Alw21I	GWGCWC	1 cut(s)	59
AoxI	GGCC	1 cut(s)	108
ApeKI	GCWGC	1 cut(s)	158
AsuHPI	GGTGA	1 cut(s)	41
Bbv12I	GWGCWC	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	1 cut(s)	179
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
BseMII	CTCAG	1 cut(s)	140
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	145
BshFI	GGCC	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	59
Bsp143I	GATC	2 cut(s)	31, 96
BspACI	CCGC	1 cut(s)	156
BspANI	GGCC	1 cut(s)	110
BspCNI	CTCAG	1 cut(s)	139
BssMI	GATC	2 cut(s)	31, 96
Bst4CI	ACNGT	1 cut(s)	237
BstDEI	CTNAG	1 cut(s)	126
BstKTI	GATC	2 cut(s)	34, 99
BstMBI	GATC	2 cut(s)	31, 96
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstV1I	GCAGC	1 cut(s)	145
BsuRI	GGCC	1 cut(s)	110
CviAII	CATG	3 cut(s)	41, 89, 103
CviJI	RGCY	4 cut(s)	50, 110, 189, 229
CviKI_1	RGCY	4 cut(s)	50, 110, 189, 229
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	2 cut(s)	33, 98
DpnII	GATC	2 cut(s)	31, 96
DraIII	CACNNNGTG	1 cut(s)	237
Eco147I	AGGCCT	1 cut(s)	110
FaeI	CATG	3 cut(s)	44, 92, 106
FaiI	YATR	7 cut(s)	8, 42, 90, 104, 149, 167, 169
FatI	CATG	3 cut(s)	40, 88, 102
Fnu4HI	GCNGC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	159
GluI	GCNGC	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	110
Hin1II	CATG	3 cut(s)	44, 92, 106
HinfI	GANTC	1 cut(s)	178
HphI	GGTGA	1 cut(s)	41
Hpy188I	TCNGA	1 cut(s)	129
Hpy188III	TCNNGA	1 cut(s)	182
HpyAV	CCTTC	1 cut(s)	59
HpyCH4III	ACNGT	1 cut(s)	237
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	2 cut(s)	80, 161
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
HpyF3I	CTNAG	1 cut(s)	126
HpySE526I	ACGT	1 cut(s)	132
Hsp92II	CATG	3 cut(s)	44, 92, 106
Kzo9I	GATC	2 cut(s)	31, 96
LmnI	GCTCC	1 cut(s)	70
Lsp1109I	GCAGC	1 cut(s)	145
MaeII	ACGT	1 cut(s)	132
MalI	GATC	2 cut(s)	33, 98
MboI	GATC	2 cut(s)	31, 96
MboII	GAAGA	2 cut(s)	91, 187
MhlI	GDGCHC	1 cut(s)	59
MluCI	AATT	2 cut(s)	15, 74
MnlI	CCTC	6 cut(s)	55, 100, 121, 130, 133, 202
MseI	TTAA	1 cut(s)	14
MspA1I	CMGCKG	1 cut(s)	158
Mva1269I	GAATGC	1 cut(s)	143
MwoI	GCNNNNNNNGC	1 cut(s)	122
NdeII	GATC	2 cut(s)	31, 96
NlaIII	CATG	3 cut(s)	44, 92, 106
PceI	AGGCCT	1 cut(s)	110
PctI	GAATGC	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	178
PkrI	GCNGC	1 cut(s)	160
Psp1406I	AACGTT	1 cut(s)	132
SaqAI	TTAA	1 cut(s)	14
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	2 cut(s)	31, 96
SduI	GDGCHC	1 cut(s)	59
SetI	ASST	2 cut(s)	52, 135
SgeI	CNNG	7 cut(s)	53, 59, 101, 115, 184, 194, 232
Sse9I	AATT	2 cut(s)	15, 74
SseBI	AGGCCT	1 cut(s)	110
SsiI	CCGC	1 cut(s)	156
StuI	AGGCCT	1 cut(s)	110
TaaI	ACNGT	1 cut(s)	237
TaiI	ACGT	1 cut(s)	135
TasI	AATT	2 cut(s)	15, 74
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TseI	GCWGC	1 cut(s)	158
TspDTI	ATGAA	2 cut(s)	91, 136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.