Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005599

Physical Location & Seq

Genomic Coordinates Forward (+)

51471895 .. 51482579

Gene Structure 10685 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39499

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGATCACCATCGATAACAAACCAATCAAGCTCCACGAGTCATTCAGATCCATTACACGATCCTACTATAGAAGAGGAGCCGCTGGCGCTTTGCTTGTCTATGTCATCACCAGGAGAGAAACTTTTAATCAATTGGCTAGCTGGCTAGAGGATGAGAGGCAGCATGCAAATGCAAACGTGACCATAATGTTAATTGGTAATAAGTGTGATCTTGCTCATAGACTAGCTGTGAGCACACAGGAAGGGGAGCAATTTGCAACGGAACATGGATTGATCTTCATGGAGGCCTCTGCTAAAACTGCTCAGAATGTTGAGGAGGCATTCATAAAAACTGCTGCAACCATATACAAGAAGATTCAAGATGGCGTTTTTGATGTATTAAATGAGGTACTACTACTTGTGCGTTTTCTCCAGCATGAGTATAATCTTGGCCGACCTTTCAACCAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko04152 map04152

Pfam Domains

Protein Families

Ras

Protein Analysis

150

Amino Acids

17.11

Weight (kDa)

6.97

Isoelectric Point (pI)

35.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Roc	PF08477	12 - 70	1e-07	Ras of Complex, Roc, domain of DAPkinase
Ras	PF00071	13 - 116	6.4e-31	Ras family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17160
fragaria_vesca	FvH4_3g00140
malus_domestica	MD05G1363800.v1.1 MD10G1341700.v1.1
prunus_persica	Prupe.4G001600_v2.0.a1 Prupe.4G001600_v2.0.a1 Prupe.4G001600_v2.0.a1
pyrus_communis	pycom05g32990 pycom10g29100
rosa_chinensis	RchiOBHm_Chr4g0425891 RchiOBHm_Chr5g0000191
rosa_laevigata	RLG00000018515 RLG00000030849
rosa_multiflora	Rmu_co8459821.1_g000001 Rmu_co8468425.1_g000001 Rmu_ssc0000243.1_g000011
rosa_roxburghii	Rroxscaffold_1G00075900 Rroxscaffold_2G00088190
rosa_rugosa	Rorug01G0341700 Rorug04G0382500
rosa_samantha	Rh2AG134900 Rh5CG001600 Rh5CG499000 Rh5DG001500 Rh6CG032700 Rh7DG362100
rosa_wichuraiana	Rw1G021010 Rw5G000180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	81
AclWI	GGATC	2 cut(s)	42, 54
AcoI	YGGCCR	1 cut(s)	430
AfaI	GTAC	1 cut(s)	390
AgsI	TTSAA	2 cut(s)	359, 442
AjnI	CCWGG	1 cut(s)	110
AluBI	AGCT	4 cut(s)	31, 141, 227, 449
AluI	AGCT	4 cut(s)	31, 141, 227, 449
Alw21I	GWGCWC	1 cut(s)	236
AlwI	GGATC	2 cut(s)	42, 54
AoxI	GGCC	2 cut(s)	285, 430
ApeKI	GCWGC	2 cut(s)	160, 335
AspLEI	GCGC	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	100
AsuNHI	GCTAGC	1 cut(s)	137
BauI	CACGAG	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	236
BbvI	GCAGC	2 cut(s)	172, 322
BccI	CCATC	2 cut(s)	17, 356
BciT130I	CCWGG	1 cut(s)	112
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	3 cut(s)	138, 146, 224
BfmI	CTRYAG	1 cut(s)	67
BfoI	RGCGCY	1 cut(s)	90
BisI	GCNGC	3 cut(s)	81, 161, 336
BlsI	GCNGC	3 cut(s)	82, 162, 337
Bme1390I	CCNGG	1 cut(s)	112
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	1 cut(s)	112
BmtI	GCTAGC	1 cut(s)	141
BpmI	CTGGAG	1 cut(s)	395
Bsa29I	ATCGAT	1 cut(s)	12
BsaBI	GATNNNNATC	1 cut(s)	8
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	1 cut(s)	112
BseCI	ATCGAT	1 cut(s)	12
BseGI	GGATG	1 cut(s)	157
BseJI	GATNNNNATC	1 cut(s)	8
BseMII	CTCAG	1 cut(s)	317
BseRI	GAGGAG	2 cut(s)	90, 329
BseXI	GCAGC	2 cut(s)	172, 322
BshFI	GGCC	2 cut(s)	287, 432
BshVI	ATCGAT	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	236
BsmI	GAATGC	1 cut(s)	320
BsnI	GGCC	2 cut(s)	287, 432
Bsp1286I	GDGCHC	1 cut(s)	236
Bsp143I	GATC	5 cut(s)	3, 47, 59, 208, 273
BspACI	CCGC	1 cut(s)	81
BspANI	GGCC	2 cut(s)	287, 432
BspCNI	CTCAG	1 cut(s)	316
BspDI	ATCGAT	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	79
BspOI	GCTAGC	1 cut(s)	141
BspPI	GGATC	2 cut(s)	42, 54
BssMI	GATC	5 cut(s)	3, 47, 59, 208, 273
BssSI	CACGAG	1 cut(s)	35
Bst2BI	CACGAG	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	112
Bst6I	CTCTTC	1 cut(s)	67
BstC8I	GCNNGC	4 cut(s)	85, 139, 143, 165
BstDEI	CTNAG	1 cut(s)	303
BstF5I	GGATG	1 cut(s)	157
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	5 cut(s)	6, 50, 62, 211, 276
BstMBI	GATC	5 cut(s)	3, 47, 59, 208, 273
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 299
BstNI	CCWGG	1 cut(s)	112
BstNSI	RCATGY	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	110
BstSFI	CTRYAG	1 cut(s)	67
BstV1I	GCAGC	2 cut(s)	172, 322
BstX2I	RGATCY	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	47
Bsu15I	ATCGAT	1 cut(s)	12
BsuRI	GGCC	2 cut(s)	287, 432
BsuTUI	ATCGAT	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	157
Cac8I	GCNNGC	4 cut(s)	85, 139, 143, 165
CfoI	GCGC	1 cut(s)	89
ClaI	ATCGAT	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	389
CviAII	CATG	4 cut(s)	164, 266, 280, 416
CviJI	RGCY	9 cut(s)	31, 80, 137, 141, 145, 227, 287, 432, 449
CviKI_1	RGCY	9 cut(s)	31, 80, 137, 141, 145, 227, 287, 432, 449
CviQI	GTAC	1 cut(s)	389
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	5 cut(s)	5, 49, 61, 210, 275
DpnII	GATC	5 cut(s)	3, 47, 59, 208, 273
EaeI	YGGCCR	1 cut(s)	430
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
Eco147I	AGGCCT	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	110
FaeI	CATG	4 cut(s)	167, 269, 283, 419
FatI	CATG	4 cut(s)	163, 265, 279, 415
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	3 cut(s)	81, 161, 336
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	3 cut(s)	81, 161, 336
FspBI	CTAG	3 cut(s)	138, 146, 224
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	3 cut(s)	81, 161, 336
GsuI	CTGGAG	1 cut(s)	395
HaeII	RGCGCY	1 cut(s)	90
HaeIII	GGCC	2 cut(s)	287, 432
HhaI	GCGC	1 cut(s)	89
Hin1II	CATG	4 cut(s)	167, 269, 283, 419
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HindIII	AAGCTT	1 cut(s)	447
HinfI	GANTC	2 cut(s)	38, 355
HphI	GGTGA	1 cut(s)	100
Hpy188I	TCNGA	2 cut(s)	47, 306
Hpy188III	TCNNGA	1 cut(s)	359
HpyAV	CCTTC	1 cut(s)	236
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	4 cut(s)	167, 173, 257, 338
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 299
HpyF3I	CTNAG	1 cut(s)	303
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	4 cut(s)	167, 269, 283, 419
HspAI	GCGC	1 cut(s)	87
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	5 cut(s)	3, 47, 59, 208, 273
LmnI	GCTCC	3 cut(s)	36, 77, 247
LpnPI	CCDG	6 cut(s)	69, 97, 124, 127, 224, 425
Lsp1109I	GCAGC	2 cut(s)	172, 322
MaeI	CTAG	3 cut(s)	138, 146, 224
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	5 cut(s)	5, 49, 61, 210, 275
MboI	GATC	5 cut(s)	3, 47, 59, 208, 273
MboII	GAAGA	3 cut(s)	84, 268, 364
MfeI	CAATTG	1 cut(s)	131
MflI	RGATCY	1 cut(s)	47
MhlI	GDGCHC	1 cut(s)	236
MluCI	AATT	3 cut(s)	131, 192, 251
MlyI	GAGTC	1 cut(s)	47
MnlI	CCTC	8 cut(s)	68, 142, 150, 277, 298, 307, 310, 379
MseI	TTAA	3 cut(s)	126, 191, 380
MslI	CAYNNNNRTG	1 cut(s)	168
MspA1I	CMGCKG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	112
MunI	CAATTG	1 cut(s)	131
Mva1269I	GAATGC	1 cut(s)	320
MvaI	CCWGG	1 cut(s)	112
MwoI	GCNNNNNNNGC	2 cut(s)	86, 299
NdeII	GATC	5 cut(s)	3, 47, 59, 208, 273
NheI	GCTAGC	1 cut(s)	137
NlaIII	CATG	4 cut(s)	167, 269, 283, 419
NlaIV	GGNNCC	1 cut(s)	79
NmuCI	GTSAC	1 cut(s)	178
NspI	RCATGY	1 cut(s)	167
PaeI	GCATGC	1 cut(s)	167
PceI	AGGCCT	1 cut(s)	287
PctI	GAATGC	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	355
PkrI	GCNGC	3 cut(s)	82, 162, 337
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	110
PspN4I	GGNNCC	1 cut(s)	79
PsuI	RGATCY	1 cut(s)	47
RsaI	GTAC	1 cut(s)	390
RsaNI	GTAC	1 cut(s)	389
RseI	CAYNNNNRTG	1 cut(s)	168
SaqAI	TTAA	3 cut(s)	126, 191, 380
SatI	GCNGC	3 cut(s)	81, 161, 336
Sau3AI	GATC	5 cut(s)	3, 47, 59, 208, 273
SchI	GAGTC	1 cut(s)	47
ScrFI	CCNGG	1 cut(s)	112
SduI	GDGCHC	1 cut(s)	236
SetI	ASST	7 cut(s)	33, 143, 180, 229, 390, 439, 451
SfcI	CTRYAG	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	168
SphI	GCATGC	1 cut(s)	167
Sse9I	AATT	3 cut(s)	131, 192, 251
SseBI	AGGCCT	1 cut(s)	287
SsiI	CCGC	1 cut(s)	81
SspMI	CTAG	3 cut(s)	138, 146, 224
StuI	AGGCCT	1 cut(s)	287
StyD4I	CCNGG	1 cut(s)	110
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	1 cut(s)	12
TasI	AATT	3 cut(s)	131, 192, 251
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	1 cut(s)	355
Tru1I	TTAA	3 cut(s)	126, 191, 380
Tru9I	TTAA	3 cut(s)	126, 191, 380
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	2 cut(s)	160, 335
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	2 cut(s)	268, 313
TspGWI	ACGGA	1 cut(s)	275
XceI	RCATGY	1 cut(s)	167
XspI	CTAG	3 cut(s)	138, 146, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.