Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8459821.1

Orthogroup ID

OG0005599

Physical Location & Seq

Genomic Coordinates Reverse (-)

341 .. 1432

Gene Structure 1092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8459821.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

atggcatgtcatgccactggtactgataagatggcattttcgtttactcttaggagagaaacttttaatcacttggctagttggctagaggatgcaaggcagcatgcaaatgcaaacatgaccattatgttaattggtaataagtgtgatcttgctcatagacgagctgtgagcacagaggaaggggaacaatttgcaaaggaacatggattgatcttcatggaggcctctgctaaaactgctcagaatgttgaggaggcattcataaaaactgctgcaaccatatacaagaagattcaagatggcgtttttgatgtatcaaatgagtcttatggcataaaagtcggatatgggggaattccaggaccatcaggaggcagagatggttcttcctctcaagctggaggctgttgcagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005886 GO:0006810 GO:0006888 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0030100 GO:0031410 GO:0031982 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0048193 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060627 GO:0065007 GO:0071944 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04152 map04152

Pfam Domains

Protein Families

Ras

Protein Analysis

139

Amino Acids

14.95

Weight (kDa)

6.19

Isoelectric Point (pI)

44.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17160
fragaria_vesca	FvH4_3g00140
malus_domestica	MD05G1363800.v1.1 MD10G1341700.v1.1
prunus_persica	Prupe.4G001600_v2.0.a1 Prupe.4G001600_v2.0.a1 Prupe.4G001600_v2.0.a1
pyrus_communis	pycom05g32990 pycom10g29100
rosa_chinensis	RchiOBHm_Chr4g0425891 RchiOBHm_Chr5g0000191
rosa_laevigata	RLG00000018515 RLG00000030849
rosa_multiflora	Rmu_co8459821.1_g000001 Rmu_co8468425.1_g000001 Rmu_ssc0000243.1_g000011
rosa_roxburghii	Rroxscaffold_1G00075900 Rroxscaffold_2G00088190
rosa_rugosa	Rorug01G0341700 Rorug04G0382500
rosa_samantha	Rh2AG134900 Rh5CG001600 Rh5CG499000 Rh5DG001500 Rh6CG032700 Rh7DG362100
rosa_wichuraiana	Rw1G021010 Rw5G000180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	357
AfaI	GTAC	1 cut(s)	22
AfiI	CCNNNNNNNGG	1 cut(s)	374
AgsI	TTSAA	1 cut(s)	299
AjnI	CCWGG	1 cut(s)	361
AluBI	AGCT	2 cut(s)	167, 401
AluI	AGCT	2 cut(s)	167, 401
Alw21I	GWGCWC	1 cut(s)	176
AoxI	GGCC	1 cut(s)	225
ApeKI	GCWGC	2 cut(s)	100, 275
ApoI	RAATTY	1 cut(s)	357
AspS9I	GGNCC	1 cut(s)	365
AvaII	GGWCC	1 cut(s)	365
Bbv12I	GWGCWC	1 cut(s)	176
BbvI	GCAGC	2 cut(s)	112, 262
BccI	CCATC	4 cut(s)	25, 296, 376, 377
BcgI	CGANNNNNNTGC	2 cut(s)	325, 359
BciT130I	CCWGG	1 cut(s)	363
BfaI	CTAG	2 cut(s)	78, 86
BisI	GCNGC	2 cut(s)	101, 276
BlsI	GCNGC	2 cut(s)	102, 277
Bme1390I	CCNGG	1 cut(s)	363
Bme18I	GGWCC	1 cut(s)	365
BmgT120I	GGNCC	1 cut(s)	365
BmrFI	CCNGG	1 cut(s)	363
BmsI	GCATC	1 cut(s)	82
BpuEI	CTTGAG	1 cut(s)	381
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse1I	ACTGG	1 cut(s)	22
BseBI	CCWGG	1 cut(s)	363
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMII	CTCAG	1 cut(s)	257
BseNI	ACTGG	1 cut(s)	22
BseRI	GAGGAG	1 cut(s)	269
BseXI	GCAGC	2 cut(s)	112, 262
BshFI	GGCC	1 cut(s)	227
BsiHKAI	GWGCWC	1 cut(s)	176
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmI	GAATGC	1 cut(s)	260
BsnI	GGCC	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp143I	GATC	2 cut(s)	148, 213
BspANI	GGCC	1 cut(s)	227
BspCNI	CTCAG	1 cut(s)	256
BsrI	ACTGG	1 cut(s)	22
BssMI	GATC	2 cut(s)	148, 213
Bst2UI	CCWGG	1 cut(s)	363
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	2 cut(s)	50, 243
BstF5I	GGATG	1 cut(s)	97
BstKTI	GATC	2 cut(s)	151, 216
BstMBI	GATC	2 cut(s)	148, 213
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 239
BstNI	CCWGG	1 cut(s)	363
BstNSI	RCATGY	2 cut(s)	9, 107
BstSCI	CCNGG	1 cut(s)	361
BstV1I	GCAGC	2 cut(s)	112, 262
BsuRI	GGCC	1 cut(s)	227
BtsCI	GGATG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	15
Cac8I	GCNNGC	1 cut(s)	105
Cfr13I	GGNCC	1 cut(s)	365
Csp6I	GTAC	1 cut(s)	21
CviAII	CATG	6 cut(s)	6, 11, 104, 118, 206, 220
CviJI	RGCY	6 cut(s)	77, 85, 167, 227, 401, 408
CviKI_1	RGCY	6 cut(s)	77, 85, 167, 227, 401, 408
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	2 cut(s)	50, 243
DpnI	GATC	2 cut(s)	150, 215
DpnII	GATC	2 cut(s)	148, 213
Eco147I	AGGCCT	1 cut(s)	227
Eco47I	GGWCC	1 cut(s)	365
EcoRI	GAATTC	1 cut(s)	357
EcoRII	CCWGG	1 cut(s)	361
FaeI	CATG	6 cut(s)	9, 14, 107, 121, 209, 223
FatI	CATG	6 cut(s)	5, 10, 103, 117, 205, 219
Fnu4HI	GCNGC	2 cut(s)	101, 276
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	2 cut(s)	101, 276
FspBI	CTAG	2 cut(s)	78, 86
GluI	GCNGC	2 cut(s)	101, 276
HaeIII	GGCC	1 cut(s)	227
Hin1II	CATG	6 cut(s)	9, 14, 107, 121, 209, 223
HinfI	GANTC	2 cut(s)	295, 326
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188I	TCNGA	2 cut(s)	246, 347
Hpy188III	TCNNGA	2 cut(s)	299, 372
Hpy8I	GTNNAC	1 cut(s)	45
HpyAV	CCTTC	1 cut(s)	176
HpyCH4V	TGCA	6 cut(s)	95, 107, 113, 197, 278, 414
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 239
HpyF3I	CTNAG	2 cut(s)	50, 243
Hsp92II	CATG	6 cut(s)	9, 14, 107, 121, 209, 223
Kzo9I	GATC	2 cut(s)	148, 213
LpnPI	CCDG	5 cut(s)	3, 348, 357, 375, 387
Lsp1109I	GCAGC	2 cut(s)	112, 262
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	2 cut(s)	78, 86
MalI	GATC	2 cut(s)	150, 215
MboI	GATC	2 cut(s)	148, 213
MboII	GAAGA	3 cut(s)	208, 304, 381
MhlI	GDGCHC	1 cut(s)	176
MluCI	AATT	3 cut(s)	132, 191, 357
MlyI	GAGTC	1 cut(s)	335
MmeI	TCCRAC	1 cut(s)	325
MnlI	CCTC	9 cut(s)	82, 172, 217, 238, 247, 250, 368, 398, 403
MseI	TTAA	2 cut(s)	66, 131
MslI	CAYNNNNRTG	1 cut(s)	108
MspR9I	CCNGG	1 cut(s)	363
Mva1269I	GAATGC	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	363
MwoI	GCNNNNNNNGC	2 cut(s)	11, 239
NdeII	GATC	2 cut(s)	148, 213
NlaIII	CATG	6 cut(s)	9, 14, 107, 121, 209, 223
NspI	RCATGY	2 cut(s)	9, 107
PaeI	GCATGC	1 cut(s)	107
PceI	AGGCCT	1 cut(s)	227
PctI	GAATGC	1 cut(s)	260
PfeI	GAWTC	1 cut(s)	295
PfoI	TCCNGGA	1 cut(s)	361
PkrI	GCNGC	2 cut(s)	102, 277
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
Psp6I	CCWGG	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	361
PspPI	GGNCC	1 cut(s)	365
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
RseI	CAYNNNNRTG	1 cut(s)	108
SaqAI	TTAA	2 cut(s)	66, 131
SatI	GCNGC	2 cut(s)	101, 276
Sau3AI	GATC	2 cut(s)	148, 213
Sau96I	GGNCC	1 cut(s)	365
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	1 cut(s)	176
SetI	ASST	2 cut(s)	169, 403
SfaNI	GCATC	1 cut(s)	82
SinI	GGWCC	1 cut(s)	365
SmiMI	CAYNNNNRTG	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	396
SmoI	CTYRAG	1 cut(s)	396
SphI	GCATGC	1 cut(s)	107
Sse9I	AATT	3 cut(s)	132, 191, 357
SseBI	AGGCCT	1 cut(s)	227
SspMI	CTAG	2 cut(s)	78, 86
StuI	AGGCCT	1 cut(s)	227
StyD4I	CCNGG	1 cut(s)	361
TasI	AATT	3 cut(s)	132, 191, 357
TfiI	GAWTC	1 cut(s)	295
Tru1I	TTAA	2 cut(s)	66, 131
Tru9I	TTAA	2 cut(s)	66, 131
TscAI	CASTG	1 cut(s)	22
TseI	GCWGC	2 cut(s)	100, 275
TspDTI	ATGAA	2 cut(s)	208, 253
TspRI	CASTG	1 cut(s)	22
VpaK11BI	GGWCC	1 cut(s)	365
XapI	RAATTY	1 cut(s)	357
XceI	RCATGY	2 cut(s)	9, 107
XspI	CTAG	2 cut(s)	78, 86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.