Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005599

Physical Location & Seq

Genomic Coordinates Forward (+)

96467806 .. 96470094

Gene Structure 2289 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00075900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTCTTACGCCTATCTCTTCAAGTACATCATCATCGGAGATACTGGAGTTGGCAAATCATGCCTTCTTCTTCAGTTCACCGACAAACGCTTCCAGCCGGTGCACGATTTGACTATTGGTGTTGAGTTTGGAGCTAGGATGATCACCATCGATAACAAGCCAATCAAGCTCCAAATTTGGGACACGGCAGGTCAAGAGTCATTTAGATCCATTACACGATCCTACTATAGAGGAGCTGCTGGCGCTTTGCTTGTCTATGACATCACCAGGAGAGAAACTTTTAATCACTTGGCTAGTTGGCTAGAGGATGCAAGGCAGCATGCAAATGCAAACATGACCATAATGTTAATTGGTAATAAGTGTGATCTTGCTCATAGACGAGCTGTGAGCACAGAGGAAGGGGAACAATTTGCAAAGGAACATGGATTGATCTTCATGGAGGCCTCTGCTAAAACTGCTCAAAATGTTGAGGAGGCATTCATAAAAACTGCTGCAACCATATACAAGAAGATTCAAGATGGCGTATTTGATGTATCAAATGAGTCTTATGGCATAAAAGTCGGATATGGGGGAATTCCAGGACCATCAGGAGGCAGAGATGGTTCTGCCTCTCAAGCTGGAGGCTGTTGCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005886 GO:0006810 GO:0006888 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0030100 GO:0031410 GO:0031982 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0048193 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060627 GO:0065007 GO:0071944 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04152 map04152

Pfam Domains

Protein Families

Ras

Protein Analysis

211

Amino Acids

23.18

Weight (kDa)

6.96

Isoelectric Point (pI)

37.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	7 - 160	1e-12	ADP-ribosylation factor family
Ras	PF00071	8 - 168	1.7e-64	Ras family
Roc	PF08477	8 - 122	3.8e-33	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17160
fragaria_vesca	FvH4_3g00140
malus_domestica	MD05G1363800.v1.1 MD10G1341700.v1.1
prunus_persica	Prupe.4G001600_v2.0.a1 Prupe.4G001600_v2.0.a1 Prupe.4G001600_v2.0.a1
pyrus_communis	pycom05g32990 pycom10g29100
rosa_chinensis	RchiOBHm_Chr4g0425891 RchiOBHm_Chr5g0000191
rosa_laevigata	RLG00000018515 RLG00000030849
rosa_multiflora	Rmu_co8459821.1_g000001 Rmu_co8468425.1_g000001 Rmu_ssc0000243.1_g000011
rosa_roxburghii	Rroxscaffold_1G00075900 Rroxscaffold_2G00088190
rosa_rugosa	Rorug01G0341700 Rorug04G0382500
rosa_samantha	Rh2AG134900 Rh5CG001600 Rh5CG499000 Rh5DG001500 Rh6CG032700 Rh7DG362100
rosa_wichuraiana	Rw1G021010 Rw5G000180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	179
AclWI	GGATC	2 cut(s)	201, 213
AcsI	RAATTY	2 cut(s)	174, 573
AcuI	CTGAAG	1 cut(s)	56
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	2 cut(s)	178, 590
AgsI	TTSAA	2 cut(s)	22, 515
AjnI	CCWGG	2 cut(s)	266, 577
AluBI	AGCT	5 cut(s)	134, 169, 236, 383, 617
AluI	AGCT	5 cut(s)	134, 169, 236, 383, 617
Alw21I	GWGCWC	2 cut(s)	105, 392
Alw44I	GTGCAC	1 cut(s)	101
AlwI	GGATC	2 cut(s)	201, 213
AoxI	GGCC	1 cut(s)	441
ApaLI	GTGCAC	1 cut(s)	101
ApeKI	GCWGC	3 cut(s)	236, 316, 491
ApoI	RAATTY	2 cut(s)	174, 573
AspLEI	GCGC	1 cut(s)	245
AspS9I	GGNCC	1 cut(s)	581
AsuHPI	GGTGA	3 cut(s)	70, 136, 256
AvaII	GGWCC	1 cut(s)	581
BaeGI	GKGCMC	1 cut(s)	105
BaeI	ACNNNNGTAYC	2 cut(s)	33, 66
Bbv12I	GWGCWC	2 cut(s)	105, 392
BbvI	GCAGC	3 cut(s)	223, 328, 478
BccI	CCATC	4 cut(s)	155, 512, 592, 593
BceAI	ACGGC	1 cut(s)	201
BcgI	CGANNNNNNTGC	2 cut(s)	541, 575
BciT130I	CCWGG	2 cut(s)	268, 579
BclI	TGATCA	1 cut(s)	141
BfaI	CTAG	3 cut(s)	135, 294, 302
BfmI	CTRYAG	1 cut(s)	226
BfoI	RGCGCY	1 cut(s)	246
BfuAI	ACCTGC	1 cut(s)	179
BisI	GCNGC	3 cut(s)	237, 317, 492
BlsI	GCNGC	3 cut(s)	238, 318, 493
Bme1390I	CCNGG	2 cut(s)	268, 579
Bme18I	GGWCC	1 cut(s)	581
BmgT120I	GGNCC	1 cut(s)	581
BmrFI	CCNGG	2 cut(s)	268, 579
BmsI	GCATC	1 cut(s)	298
BpmI	CTGGAG	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	597
Bsa29I	ATCGAT	1 cut(s)	150
BsaBI	GATNNNNATC	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 590
Bse118I	RCCGGY	1 cut(s)	97
Bse1I	ACTGG	1 cut(s)	49
Bse8I	GATNNNNATC	1 cut(s)	146
BseBI	CCWGG	2 cut(s)	268, 579
BseCI	ATCGAT	1 cut(s)	150
BseGI	GGATG	2 cut(s)	144, 313
BseJI	GATNNNNATC	1 cut(s)	146
BseLI	CCNNNNNNNGG	2 cut(s)	178, 590
BseNI	ACTGG	1 cut(s)	49
BseRI	GAGGAG	2 cut(s)	246, 485
BseSI	GKGCMC	1 cut(s)	105
BseXI	GCAGC	3 cut(s)	223, 328, 478
BshFI	GGCC	1 cut(s)	443
BshVI	ATCGAT	1 cut(s)	150
BsiHKAI	GWGCWC	2 cut(s)	105, 392
BsiSI	CCGG	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	2 cut(s)	178, 590
BsmFI	GGGAC	1 cut(s)	194
BsmI	GAATGC	1 cut(s)	476
BsnI	GGCC	1 cut(s)	443
Bsp1286I	GDGCHC	2 cut(s)	105, 392
Bsp143I	GATC	5 cut(s)	141, 206, 218, 364, 429
BspANI	GGCC	1 cut(s)	443
BspDI	ATCGAT	1 cut(s)	150
BspMI	ACCTGC	1 cut(s)	179
BspPI	GGATC	2 cut(s)	201, 213
BsrFI	RCCGGY	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	49
BssAI	RCCGGY	1 cut(s)	97
BssMI	GATC	5 cut(s)	141, 206, 218, 364, 429
Bst2UI	CCWGG	2 cut(s)	268, 579
Bst6I	CTCTTC	1 cut(s)	23
BstAPI	GCANNNNNTGC	1 cut(s)	60
BstC8I	GCNNGC	2 cut(s)	241, 321
BstF5I	GGATG	2 cut(s)	144, 313
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	245
BstKTI	GATC	5 cut(s)	144, 209, 221, 367, 432
BstMBI	GATC	5 cut(s)	141, 206, 218, 364, 429
BstMWI	GCNNNNNNNGC	5 cut(s)	60, 166, 242, 455, 614
BstNI	CCWGG	2 cut(s)	268, 579
BstNSI	RCATGY	1 cut(s)	323
BstSCI	CCNGG	2 cut(s)	266, 577
BstSFI	CTRYAG	1 cut(s)	226
BstSLI	GKGCMC	1 cut(s)	105
BstV1I	GCAGC	3 cut(s)	223, 328, 478
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
Bsu15I	ATCGAT	1 cut(s)	150
BsuRI	GGCC	1 cut(s)	443
BsuTUI	ATCGAT	1 cut(s)	150
BtsCI	GGATG	2 cut(s)	144, 313
BveI	ACCTGC	1 cut(s)	179
Cac8I	GCNNGC	2 cut(s)	241, 321
CfoI	GCGC	1 cut(s)	245
Cfr10I	RCCGGY	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	581
ClaI	ATCGAT	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	5 cut(s)	60, 320, 334, 422, 436
CviQI	GTAC	1 cut(s)	25
DpnI	GATC	5 cut(s)	143, 208, 220, 366, 431
DpnII	GATC	5 cut(s)	141, 206, 218, 364, 429
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Eco147I	AGGCCT	1 cut(s)	443
Eco47I	GGWCC	1 cut(s)	581
Eco57I	CTGAAG	1 cut(s)	56
EcoRI	GAATTC	1 cut(s)	573
EcoRII	CCWGG	2 cut(s)	266, 577
FaeI	CATG	5 cut(s)	63, 323, 337, 425, 439
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	5 cut(s)	59, 319, 333, 421, 435
FbaI	TGATCA	1 cut(s)	141
Fnu4HI	GCNGC	3 cut(s)	237, 317, 492
FokI	GGATG	2 cut(s)	151, 320
Fsp4HI	GCNGC	3 cut(s)	237, 317, 492
FspBI	CTAG	3 cut(s)	135, 294, 302
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	3 cut(s)	237, 317, 492
GsuI	CTGGAG	1 cut(s)	66
HaeII	RGCGCY	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	443
HapII	CCGG	1 cut(s)	98
HhaI	GCGC	1 cut(s)	245
Hin1II	CATG	5 cut(s)	63, 323, 337, 425, 439
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HinfI	GANTC	3 cut(s)	197, 511, 542
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	3 cut(s)	70, 136, 256
Hpy166II	GTNNAC	2 cut(s)	78, 103
Hpy188I	TCNGA	2 cut(s)	38, 563
Hpy188III	TCNNGA	3 cut(s)	194, 515, 588
Hpy8I	GTNNAC	2 cut(s)	78, 103
HpyAV	CCTTC	2 cut(s)	74, 392
HpyCH4V	TGCA	7 cut(s)	103, 311, 323, 329, 413, 494, 630
HpyF10VI	GCNNNNNNNGC	5 cut(s)	60, 166, 242, 455, 614
Hsp92II	CATG	5 cut(s)	63, 323, 337, 425, 439
HspAI	GCGC	1 cut(s)	243
Ksp22I	TGATCA	1 cut(s)	141
Kzo9I	GATC	5 cut(s)	141, 206, 218, 364, 429
LmnI	GCTCC	3 cut(s)	131, 174, 233
Lsp1109I	GCAGC	3 cut(s)	223, 328, 478
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	3 cut(s)	135, 294, 302
MalI	GATC	5 cut(s)	143, 208, 220, 366, 431
MboI	GATC	5 cut(s)	141, 206, 218, 364, 429
MboII	GAAGA	5 cut(s)	10, 59, 62, 424, 520
MflI	RGATCY	1 cut(s)	206
MhlI	GDGCHC	2 cut(s)	105, 392
MluCI	AATT	4 cut(s)	174, 348, 407, 573
MlyI	GAGTC	2 cut(s)	206, 551
MmeI	TCCRAC	1 cut(s)	541
MseI	TTAA	2 cut(s)	282, 347
MslI	CAYNNNNRTG	1 cut(s)	324
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	2 cut(s)	268, 579
Mva1269I	GAATGC	1 cut(s)	476
MvaI	CCWGG	2 cut(s)	268, 579
MwoI	GCNNNNNNNGC	5 cut(s)	60, 166, 242, 455, 614
NdeII	GATC	5 cut(s)	141, 206, 218, 364, 429
NlaIII	CATG	5 cut(s)	63, 323, 337, 425, 439
NspI	RCATGY	1 cut(s)	323
PaeI	GCATGC	1 cut(s)	323
PceI	AGGCCT	1 cut(s)	443
PctI	GAATGC	1 cut(s)	476
PfeI	GAWTC	1 cut(s)	511
PfoI	TCCNGGA	1 cut(s)	577
PkrI	GCNGC	3 cut(s)	238, 318, 493
PleI	GAGTC	2 cut(s)	205, 550
PpsI	GAGTC	2 cut(s)	205, 550
Psp6I	CCWGG	2 cut(s)	266, 577
PspGI	CCWGG	2 cut(s)	266, 577
PspPI	GGNCC	1 cut(s)	581
PsuI	RGATCY	1 cut(s)	206
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	324
SaqAI	TTAA	2 cut(s)	282, 347
SatI	GCNGC	3 cut(s)	237, 317, 492
Sau3AI	GATC	5 cut(s)	141, 206, 218, 364, 429
Sau96I	GGNCC	1 cut(s)	581
SchI	GAGTC	2 cut(s)	206, 551
ScrFI	CCNGG	2 cut(s)	268, 579
SduI	GDGCHC	2 cut(s)	105, 392
SetI	ASST	6 cut(s)	136, 171, 193, 238, 385, 619
SfaNI	GCATC	1 cut(s)	298
SfcI	CTRYAG	1 cut(s)	226
SinI	GGWCC	1 cut(s)	581
SmiMI	CAYNNNNRTG	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	612
SmoI	CTYRAG	1 cut(s)	612
SphI	GCATGC	1 cut(s)	323
Sse9I	AATT	4 cut(s)	174, 348, 407, 573
SseBI	AGGCCT	1 cut(s)	443
SspMI	CTAG	3 cut(s)	135, 294, 302
StuI	AGGCCT	1 cut(s)	443
StyD4I	CCNGG	2 cut(s)	266, 577
TaqI	TCGA	1 cut(s)	150
TasI	AATT	4 cut(s)	174, 348, 407, 573
TatI	WGTACW	1 cut(s)	24
TfiI	GAWTC	1 cut(s)	511
Tru1I	TTAA	2 cut(s)	282, 347
Tru9I	TTAA	2 cut(s)	282, 347
TseI	GCWGC	3 cut(s)	236, 316, 491
TspDTI	ATGAA	2 cut(s)	424, 469
VneI	GTGCAC	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	581
XapI	RAATTY	2 cut(s)	174, 573
XceI	RCATGY	1 cut(s)	323
XspI	CTAG	3 cut(s)	135, 294, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.