Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005599

Physical Location & Seq

Genomic Coordinates Forward (+)

31158046 .. 31163142

Gene Structure 5097 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018515

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGATAGCAATACAACCTGAAGCAATCTCAGATCAATTGATCCCTCTCTCACATCGTTATCCCTTCTCTCGATTCGCCCCCGAATTTGATTCACCCGTATCAGAGGAGGTGATTGAGGGAGTTGGCAAATCATGCCTTCTTCTTCAGTTCACCGACAAACGCTTCCAGCCCGTGCACGATTTGACTATTGGTGTTGAGTTTGGAGCTAGGATGATCACCATTGATAACAAACCAATCAAGATCCAAATTTGGGACACGGCTGGTCAAGAGTCATTCAGATCCGTTACACGATCCTACTATAGAGGAGCTGCTGGCGCTTTGCTTGTCTATGACATCACCAGGAGAGCAACTTTTAATCAATTGGCTAGCCGGCTTGAGGATGAGAGGCACCATGCAAATGCAAACAAGACCATAATGTTAATTGGTAATAAGTGTGATCTTACTCATAGACGAGCTGTGAGCACAGAGGAAGGGGAGCAATTTGCAAAGGAACATGGATTGATCTTCATGGAGGCCTCTGCTAAAACTGTTCCGAATGTTGAGGAGGAATTCATAAAAACCGCTGCAACCATATACAAGAAGATTCAAGATGGCGTTTTTGATGTATCAAATGAGGTACTACTAATTGTGCGTTTTCTCCAGCATGAGTCTCATCTTGGCCGACCTTTCAACCAAGGAAGTGGTGTTTATATAAAGAGGGAAAGAGGTTGCAGCATCGACCCCATACACATTGATGATCCCCTTTTTTTGACTAATAATGTGGGACGCAATTGCTTTTGGATACATCAATGTATGAAGGTTTTGCACCACTGGGCTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko04152 map04152

Pfam Domains

Protein Families

Ras

Protein Analysis

274

Amino Acids

31.08

Weight (kDa)

6.46

Isoelectric Point (pI)

47.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	40 - 192	1.6e-54	Ras family
Roc	PF08477	40 - 146	1.1e-25	Ras of Complex, Roc, domain of DAPkinase
Arf	PF00025	40 - 166	1.3e-10	ADP-ribosylation factor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17160
fragaria_vesca	FvH4_3g00140
malus_domestica	MD05G1363800.v1.1 MD10G1341700.v1.1
prunus_persica	Prupe.4G001600_v2.0.a1 Prupe.4G001600_v2.0.a1 Prupe.4G001600_v2.0.a1
pyrus_communis	pycom05g32990 pycom10g29100
rosa_chinensis	RchiOBHm_Chr4g0425891 RchiOBHm_Chr5g0000191
rosa_laevigata	RLG00000018515 RLG00000030849
rosa_multiflora	Rmu_co8459821.1_g000001 Rmu_co8468425.1_g000001 Rmu_ssc0000243.1_g000011
rosa_roxburghii	Rroxscaffold_1G00075900 Rroxscaffold_2G00088190
rosa_rugosa	Rorug01G0341700 Rorug04G0382500
rosa_samantha	Rh2AG134900 Rh5CG001600 Rh5CG499000 Rh5DG001500 Rh6CG032700 Rh7DG362100
rosa_wichuraiana	Rw1G021010 Rw5G000180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	387
AciI	CCGC	1 cut(s)	561
AclWI	GGATC	5 cut(s)	34, 235, 273, 285, 731
AcoI	YGGCCR	1 cut(s)	658
AcsI	RAATTY	3 cut(s)	83, 246, 548
AcuI	CTGAAG	2 cut(s)	39, 128
AfaI	GTAC	1 cut(s)	618
AfiI	CCNNNNNNNGG	2 cut(s)	250, 376
AgsI	TTSAA	2 cut(s)	587, 670
AjnI	CCWGG	1 cut(s)	338
AluBI	AGCT	3 cut(s)	206, 308, 455
AluI	AGCT	3 cut(s)	206, 308, 455
Alw21I	GWGCWC	2 cut(s)	177, 464
Alw26I	GTCTC	1 cut(s)	654
Alw44I	GTGCAC	1 cut(s)	173
AlwI	GGATC	5 cut(s)	34, 235, 273, 285, 731
AoxI	GGCC	2 cut(s)	513, 658
ApaLI	GTGCAC	1 cut(s)	173
ApeKI	GCWGC	3 cut(s)	308, 563, 711
ApoI	RAATTY	3 cut(s)	83, 246, 548
AspLEI	GCGC	1 cut(s)	317
AsuHPI	GGTGA	5 cut(s)	84, 121, 142, 208, 328
AsuNHI	GCTAGC	1 cut(s)	365
BaeGI	GKGCMC	1 cut(s)	177
BanI	GGYRCC	1 cut(s)	387
Bbv12I	GWGCWC	2 cut(s)	177, 464
BbvI	GCAGC	3 cut(s)	295, 550, 723
BccI	CCATC	1 cut(s)	584
BceAI	ACGGC	1 cut(s)	273
BciT130I	CCWGG	1 cut(s)	340
BciVI	GTATCC	1 cut(s)	774
BclI	TGATCA	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	654
BfaI	CTAG	3 cut(s)	207, 366, 820
BfmI	CTRYAG	1 cut(s)	298
BfoI	RGCGCY	1 cut(s)	318
BfuI	GTATCC	1 cut(s)	774
BisI	GCNGC	3 cut(s)	309, 564, 712
BlsI	GCNGC	3 cut(s)	310, 565, 713
Bme1390I	CCNGG	1 cut(s)	340
BmiI	GGNNCC	1 cut(s)	389
BmrFI	CCNGG	1 cut(s)	340
BmrI	ACTGGG	1 cut(s)	820
BmsI	GCATC	1 cut(s)	723
BmtI	GCTAGC	1 cut(s)	369
BmuI	ACTGGG	1 cut(s)	820
BpmI	CTGGAG	1 cut(s)	623
BpuEI	CTTGAG	1 cut(s)	395
BsaJI	CCNNGG	1 cut(s)	673
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 376
Bse118I	RCCGGY	1 cut(s)	369
Bse1I	ACTGG	1 cut(s)	815
BseBI	CCWGG	1 cut(s)	340
BseDI	CCNNGG	1 cut(s)	673
BseGI	GGATG	2 cut(s)	216, 385
BseLI	CCNNNNNNNGG	2 cut(s)	250, 376
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	1 cut(s)	815
BseRI	GAGGAG	3 cut(s)	119, 318, 557
BseSI	GKGCMC	1 cut(s)	177
BseXI	GCAGC	3 cut(s)	295, 550, 723
BshFI	GGCC	2 cut(s)	515, 660
BshNI	GGYRCC	1 cut(s)	387
BsiHKAI	GWGCWC	2 cut(s)	177, 464
BsiSI	CCGG	1 cut(s)	370
BslFI	GGGAC	2 cut(s)	266, 777
BslI	CCNNNNNNNGG	2 cut(s)	250, 376
BsmAI	GTCTC	1 cut(s)	654
BsmFI	GGGAC	2 cut(s)	266, 777
BsnI	GGCC	2 cut(s)	515, 660
Bsp1286I	GDGCHC	2 cut(s)	177, 464
Bsp143I	GATC	9 cut(s)	31, 39, 213, 240, 278, 290, 436, 501, 736
BspACI	CCGC	1 cut(s)	561
BspANI	GGCC	2 cut(s)	515, 660
BspCNI	CTCAG	1 cut(s)	41
BspLI	GGNNCC	1 cut(s)	389
BspOI	GCTAGC	1 cut(s)	369
BspPI	GGATC	5 cut(s)	34, 235, 273, 285, 731
BspT107I	GGYRCC	1 cut(s)	387
BsrFI	RCCGGY	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	815
BssAI	RCCGGY	1 cut(s)	369
BssECI	CCNNGG	1 cut(s)	673
BssMI	GATC	9 cut(s)	31, 39, 213, 240, 278, 290, 436, 501, 736
BssT1I	CCWWGG	1 cut(s)	673
Bst2UI	CCWGG	1 cut(s)	340
Bst4CI	ACNGT	1 cut(s)	529
BstAPI	GCANNNNNTGC	1 cut(s)	132
BstC8I	GCNNGC	3 cut(s)	313, 367, 371
BstDEI	CTNAG	1 cut(s)	28
BstF5I	GGATG	2 cut(s)	216, 385
BstH2I	RGCGCY	1 cut(s)	318
BstHHI	GCGC	1 cut(s)	317
BstKTI	GATC	9 cut(s)	34, 42, 216, 243, 281, 293, 439, 504, 739
BstMAI	GTCTC	1 cut(s)	654
BstMBI	GATC	9 cut(s)	31, 39, 213, 240, 278, 290, 436, 501, 736
BstMWI	GCNNNNNNNGC	2 cut(s)	132, 314
BstNI	CCWGG	1 cut(s)	340
BstSCI	CCNGG	1 cut(s)	338
BstSFI	CTRYAG	1 cut(s)	298
BstSLI	GKGCMC	1 cut(s)	177
BstV1I	GCAGC	3 cut(s)	295, 550, 723
BstX2I	RGATCY	2 cut(s)	240, 278
BstXI	CCANNNNNNTGG	1 cut(s)	680
BstYI	RGATCY	2 cut(s)	240, 278
BsuI	GTATCC	1 cut(s)	774
BsuRI	GGCC	2 cut(s)	515, 660
BtsCI	GGATG	2 cut(s)	216, 385
BtsIMutI	CAGTG	1 cut(s)	808
Cac8I	GCNNGC	3 cut(s)	313, 367, 371
CfoI	GCGC	1 cut(s)	317
Cfr10I	RCCGGY	1 cut(s)	369
CseI	GACGC	1 cut(s)	774
Csp6I	GTAC	1 cut(s)	617
CviAII	CATG	5 cut(s)	132, 392, 494, 508, 644
CviQI	GTAC	1 cut(s)	617
DdeI	CTNAG	1 cut(s)	28
DpnI	GATC	9 cut(s)	33, 41, 215, 242, 280, 292, 438, 503, 738
DpnII	GATC	9 cut(s)	31, 39, 213, 240, 278, 290, 436, 501, 736
EaeI	YGGCCR	1 cut(s)	658
Eco130I	CCWWGG	1 cut(s)	673
Eco147I	AGGCCT	1 cut(s)	515
Eco57I	CTGAAG	2 cut(s)	39, 128
EcoRI	GAATTC	1 cut(s)	548
EcoRII	CCWGG	1 cut(s)	338
EcoT14I	CCWWGG	1 cut(s)	673
ErhI	CCWWGG	1 cut(s)	673
FaeI	CATG	5 cut(s)	135, 395, 497, 511, 647
FaqI	GGGAC	2 cut(s)	266, 777
FatI	CATG	5 cut(s)	131, 391, 493, 507, 643
FbaI	TGATCA	1 cut(s)	213
Fnu4HI	GCNGC	3 cut(s)	309, 564, 712
FokI	GGATG	2 cut(s)	223, 392
Fsp4HI	GCNGC	3 cut(s)	309, 564, 712
FspBI	CTAG	3 cut(s)	207, 366, 820
GlaI	GCGC	1 cut(s)	316
GluI	GCNGC	3 cut(s)	309, 564, 712
GsuI	CTGGAG	1 cut(s)	623
HaeII	RGCGCY	1 cut(s)	318
HaeIII	GGCC	2 cut(s)	515, 660
HapII	CCGG	1 cut(s)	370
HgaI	GACGC	1 cut(s)	774
HhaI	GCGC	1 cut(s)	317
Hin1II	CATG	5 cut(s)	135, 395, 497, 511, 647
Hin6I	GCGC	1 cut(s)	315
HinP1I	GCGC	1 cut(s)	315
HinfI	GANTC	5 cut(s)	72, 89, 269, 583, 647
HpaII	CCGG	1 cut(s)	370
HphI	GGTGA	5 cut(s)	84, 121, 142, 208, 328
Hpy166II	GTNNAC	2 cut(s)	150, 175
Hpy188I	TCNGA	4 cut(s)	31, 103, 278, 534
Hpy188III	TCNNGA	4 cut(s)	69, 238, 266, 587
Hpy8I	GTNNAC	2 cut(s)	150, 175
HpyAV	CCTTC	4 cut(s)	73, 146, 464, 790
HpyCH4III	ACNGT	1 cut(s)	529
HpyCH4V	TGCA	7 cut(s)	175, 395, 401, 485, 566, 711, 805
HpyF10VI	GCNNNNNNNGC	2 cut(s)	132, 314
HpyF3I	CTNAG	1 cut(s)	28
Hsp92II	CATG	5 cut(s)	135, 395, 497, 511, 647
HspAI	GCGC	1 cut(s)	315
KroI	GCCGGC	1 cut(s)	369
KroNI	GCCGGC	1 cut(s)	371
Ksp22I	TGATCA	1 cut(s)	213
Kzo9I	GATC	9 cut(s)	31, 39, 213, 240, 278, 290, 436, 501, 736
LmnI	GCTCC	3 cut(s)	203, 305, 475
LpnPI	CCDG	9 cut(s)	30, 179, 246, 297, 325, 352, 383, 653, 796
Lsp1109I	GCAGC	3 cut(s)	295, 550, 723
LweI	GCATC	1 cut(s)	723
MaeI	CTAG	3 cut(s)	207, 366, 820
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	9 cut(s)	33, 41, 215, 242, 280, 292, 438, 503, 738
MboI	GATC	9 cut(s)	31, 39, 213, 240, 278, 290, 436, 501, 736
MboII	GAAGA	4 cut(s)	131, 134, 496, 592
MfeI	CAATTG	3 cut(s)	35, 359, 769
MflI	RGATCY	2 cut(s)	240, 278
MhlI	GDGCHC	2 cut(s)	177, 464
MluCI	AATT	9 cut(s)	35, 83, 246, 359, 420, 479, 548, 624, 769
MlyI	GAGTC	2 cut(s)	278, 656
MroNI	GCCGGC	1 cut(s)	369
MseI	TTAA	2 cut(s)	354, 419
MslI	CAYNNNNRTG	2 cut(s)	396, 732
MspA1I	CMGCKG	1 cut(s)	563
MspI	CCGG	1 cut(s)	370
MspR9I	CCNGG	1 cut(s)	340
MunI	CAATTG	3 cut(s)	35, 359, 769
MvaI	CCWGG	1 cut(s)	340
MwoI	GCNNNNNNNGC	2 cut(s)	132, 314
NaeI	GCCGGC	1 cut(s)	371
NdeII	GATC	9 cut(s)	31, 39, 213, 240, 278, 290, 436, 501, 736
NgoMIV	GCCGGC	1 cut(s)	369
NheI	GCTAGC	1 cut(s)	365
NlaIII	CATG	5 cut(s)	135, 395, 497, 511, 647
NlaIV	GGNNCC	1 cut(s)	389
PceI	AGGCCT	1 cut(s)	515
PdiI	GCCGGC	1 cut(s)	371
PfeI	GAWTC	3 cut(s)	72, 89, 583
PkrI	GCNGC	3 cut(s)	310, 565, 713
PleI	GAGTC	2 cut(s)	277, 655
PpsI	GAGTC	2 cut(s)	277, 655
Psp6I	CCWGG	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	338
PspN4I	GGNNCC	1 cut(s)	389
PsuI	RGATCY	2 cut(s)	240, 278
RsaI	GTAC	1 cut(s)	618
RsaNI	GTAC	1 cut(s)	617
RseI	CAYNNNNRTG	2 cut(s)	396, 732
SaqAI	TTAA	2 cut(s)	354, 419
SatI	GCNGC	3 cut(s)	309, 564, 712
Sau3AI	GATC	9 cut(s)	31, 39, 213, 240, 278, 290, 436, 501, 736
SchI	GAGTC	2 cut(s)	278, 656
ScrFI	CCNGG	1 cut(s)	340
SduI	GDGCHC	2 cut(s)	177, 464
SetI	ASST	9 cut(s)	19, 111, 208, 310, 457, 618, 667, 709, 801
SfaNI	GCATC	1 cut(s)	723
SfcI	CTRYAG	1 cut(s)	298
SmiMI	CAYNNNNRTG	2 cut(s)	396, 732
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	9 cut(s)	35, 83, 246, 359, 420, 479, 548, 624, 769
SseBI	AGGCCT	1 cut(s)	515
SsiI	CCGC	1 cut(s)	561
SspMI	CTAG	3 cut(s)	207, 366, 820
StuI	AGGCCT	1 cut(s)	515
StyD4I	CCNGG	1 cut(s)	338
StyI	CCWWGG	1 cut(s)	673
TaaI	ACNGT	1 cut(s)	529
TaqI	TCGA	2 cut(s)	70, 717
TasI	AATT	9 cut(s)	35, 83, 246, 359, 420, 479, 548, 624, 769
TfiI	GAWTC	3 cut(s)	72, 89, 583
Tru1I	TTAA	2 cut(s)	354, 419
Tru9I	TTAA	2 cut(s)	354, 419
TscAI	CASTG	1 cut(s)	815
TseI	GCWGC	3 cut(s)	308, 563, 711
TspDTI	ATGAA	3 cut(s)	496, 541, 809
TspGWI	ACGGA	1 cut(s)	271
TspRI	CASTG	1 cut(s)	815
VneI	GTGCAC	1 cut(s)	173
XapI	RAATTY	3 cut(s)	83, 246, 548
XspI	CTAG	3 cut(s)	207, 366, 820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.