Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005599

Physical Location & Seq

Genomic Coordinates Reverse (-)

69398562 .. 69420389

Gene Structure 21828 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG499000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGAAAAAGTGTCAGTCTCTTCCTGCTGTGAAGATCAAGCAAGTCCATAGAACTGGGTCCAGCTCACAAAAACAAGGTTCGAATTCCTTTATTCAATCCAATGTGGCAATTCTTCAGTTCATCGACAAACGCTTCCAGCCCGTGCATGATTTGACTATTGGCGTTGAGTTTGGGGCTAGGATGATCACCATCGATAACAAACCATTCAAGCTCCAAATTTGGGACACGCCACTCATACTGATAAGATGGCATTTTCGTTTTAATCACTTGGCTAGCTGGCTAGAGGATGCGAGGCAGCATGCAAATGCAAACATGACCATAATGTTAATTGGTAGTAAGTGTGATCTTGCTCGTAGACGAGCTGTGAGCACAGAGGAAGGGGAGCAATTTGCAAAGGAACATCGATTGATCTTCATGGAGGCCTCTGCTAAAACTGCCCAGAATGTTGAGGAGGCATTCATAAAAACCGCTGCAACCATGTACAAGAAGATTCAAGATGGCGTTTTTGATGTATCAAATGAGGTTTGTTCTTCTGTTTCTGCATATCTTCAGTGTATGTCCTCGTACATCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko04152 map04152

Pfam Domains

Protein Families

Ras

Protein Analysis

191

Amino Acids

21.74

Weight (kDa)

9.23

Isoelectric Point (pI)

55.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	37 - 76	2.7e-07	Ras family
Ras	PF00071	87 - 161	6.8e-21	Ras family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17160
fragaria_vesca	FvH4_3g00140
malus_domestica	MD05G1363800.v1.1 MD10G1341700.v1.1
prunus_persica	Prupe.4G001600_v2.0.a1 Prupe.4G001600_v2.0.a1 Prupe.4G001600_v2.0.a1
pyrus_communis	pycom05g32990 pycom10g29100
rosa_chinensis	RchiOBHm_Chr4g0425891 RchiOBHm_Chr5g0000191
rosa_laevigata	RLG00000018515 RLG00000030849
rosa_multiflora	Rmu_co8459821.1_g000001 Rmu_co8468425.1_g000001 Rmu_ssc0000243.1_g000011
rosa_roxburghii	Rroxscaffold_1G00075900 Rroxscaffold_2G00088190
rosa_rugosa	Rorug01G0341700 Rorug04G0382500
rosa_samantha	Rh2AG134900 Rh5CG001600 Rh5CG499000 Rh5DG001500 Rh6CG032700 Rh7DG362100
rosa_wichuraiana	Rw1G021010 Rw5G000180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	355
AciI	CCGC	1 cut(s)	468
AcsI	RAATTY	2 cut(s)	82, 216
AcuI	CTGAAG	2 cut(s)	98, 533
AfaI	GTAC	2 cut(s)	482, 566
AfiI	CCNNNNNNNGG	1 cut(s)	220
AgsI	TTSAA	3 cut(s)	95, 208, 494
AluBI	AGCT	4 cut(s)	63, 211, 276, 362
AluI	AGCT	4 cut(s)	63, 211, 276, 362
Alw21I	GWGCWC	1 cut(s)	371
Alw26I	GTCTC	1 cut(s)	21
AoxI	GGCC	1 cut(s)	420
ApeKI	GCWGC	2 cut(s)	295, 470
ApoI	RAATTY	2 cut(s)	82, 216
AspS9I	GGNCC	1 cut(s)	57
AsuHPI	GGTGA	1 cut(s)	178
AsuII	TTCGAA	1 cut(s)	80
AsuNHI	GCTAGC	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	371
BbvI	GCAGC	2 cut(s)	307, 457
BccI	CCATC	3 cut(s)	197, 240, 491
BclI	TGATCA	1 cut(s)	183
BcoDI	GTCTC	1 cut(s)	21
BfaI	CTAG	3 cut(s)	177, 273, 281
BisI	GCNGC	2 cut(s)	296, 471
BlsI	GCNGC	2 cut(s)	297, 472
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	57
BmiI	GGNNCC	1 cut(s)	58
BmrI	ACTGGG	1 cut(s)	63
BmsI	GCATC	1 cut(s)	277
BmtI	GCTAGC	1 cut(s)	276
BmuI	ACTGGG	1 cut(s)	63
Bpu14I	TTCGAA	1 cut(s)	80
Bsa29I	ATCGAT	2 cut(s)	192, 403
BsaBI	GATNNNNATC	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
Bse1I	ACTGG	1 cut(s)	58
Bse8I	GATNNNNATC	1 cut(s)	188
BseCI	ATCGAT	2 cut(s)	192, 403
BseGI	GGATG	2 cut(s)	186, 292
BseJI	GATNNNNATC	1 cut(s)	188
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseNI	ACTGG	1 cut(s)	58
BseRI	GAGGAG	1 cut(s)	464
BseXI	GCAGC	2 cut(s)	307, 457
BshFI	GGCC	1 cut(s)	422
BshVI	ATCGAT	2 cut(s)	192, 403
BsiHKAI	GWGCWC	1 cut(s)	371
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	1 cut(s)	220
BsmAI	GTCTC	1 cut(s)	21
BsmFI	GGGAC	1 cut(s)	236
BsmI	GAATGC	1 cut(s)	455
BsnI	GGCC	1 cut(s)	422
Bsp119I	TTCGAA	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	371
Bsp1407I	TGTACA	1 cut(s)	480
Bsp143I	GATC	4 cut(s)	33, 183, 343, 408
BspACI	CCGC	1 cut(s)	468
BspANI	GGCC	1 cut(s)	422
BspDI	ATCGAT	2 cut(s)	192, 403
BspLI	GGNNCC	1 cut(s)	58
BspOI	GCTAGC	1 cut(s)	276
BspT104I	TTCGAA	1 cut(s)	80
BsrGI	TGTACA	1 cut(s)	480
BsrI	ACTGG	1 cut(s)	58
BssMI	GATC	4 cut(s)	33, 183, 343, 408
Bst6I	CTCTTC	1 cut(s)	24
BstAUI	TGTACA	1 cut(s)	480
BstBI	TTCGAA	1 cut(s)	80
BstC8I	GCNNGC	3 cut(s)	274, 278, 300
BstF5I	GGATG	2 cut(s)	186, 292
BstKTI	GATC	4 cut(s)	36, 186, 346, 411
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	4 cut(s)	33, 183, 343, 408
BstMWI	GCNNNNNNNGC	1 cut(s)	434
BstNSI	RCATGY	1 cut(s)	302
BstV1I	GCAGC	2 cut(s)	307, 457
BstXI	CCANNNNNNTGG	1 cut(s)	53
Bsu15I	ATCGAT	2 cut(s)	192, 403
BsuRI	GGCC	1 cut(s)	422
BsuTUI	ATCGAT	2 cut(s)	192, 403
BtsCI	GGATG	2 cut(s)	186, 292
BtsIMutI	CAGTG	1 cut(s)	557
Cac8I	GCNNGC	3 cut(s)	274, 278, 300
Cfr13I	GGNCC	1 cut(s)	57
ClaI	ATCGAT	2 cut(s)	192, 403
Csp6I	GTAC	2 cut(s)	481, 565
CviAII	CATG	5 cut(s)	146, 299, 313, 415, 478
CviJI	RGCY	9 cut(s)	63, 139, 176, 211, 272, 276, 280, 362, 422
CviKI_1	RGCY	9 cut(s)	63, 139, 176, 211, 272, 276, 280, 362, 422
CviQI	GTAC	2 cut(s)	481, 565
DpnI	GATC	4 cut(s)	35, 185, 345, 410
DpnII	GATC	4 cut(s)	33, 183, 343, 408
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Eco147I	AGGCCT	1 cut(s)	422
Eco47I	GGWCC	1 cut(s)	57
Eco57I	CTGAAG	2 cut(s)	98, 533
EcoRI	GAATTC	1 cut(s)	82
FaeI	CATG	5 cut(s)	149, 302, 316, 418, 481
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	5 cut(s)	145, 298, 312, 414, 477
FbaI	TGATCA	1 cut(s)	183
FblI	GTMKAC	1 cut(s)	355
Fnu4HI	GCNGC	2 cut(s)	296, 471
FokI	GGATG	2 cut(s)	193, 299
Fsp4HI	GCNGC	2 cut(s)	296, 471
FspBI	CTAG	3 cut(s)	177, 273, 281
GluI	GCNGC	2 cut(s)	296, 471
HaeIII	GGCC	1 cut(s)	422
Hin1II	CATG	5 cut(s)	149, 302, 316, 418, 481
HinfI	GANTC	1 cut(s)	490
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	1 cut(s)	356
Hpy188III	TCNNGA	1 cut(s)	494
Hpy8I	GTNNAC	1 cut(s)	356
HpyAV	CCTTC	1 cut(s)	371
HpyCH4V	TGCA	6 cut(s)	145, 302, 308, 392, 473, 542
HpyF10VI	GCNNNNNNNGC	1 cut(s)	434
Hsp92II	CATG	5 cut(s)	149, 302, 316, 418, 481
Ksp22I	TGATCA	1 cut(s)	183
Kzo9I	GATC	4 cut(s)	33, 183, 343, 408
LmnI	GCTCC	2 cut(s)	216, 382
LpnPI	CCDG	6 cut(s)	36, 39, 73, 149, 262, 452
Lsp1109I	GCAGC	2 cut(s)	307, 457
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	3 cut(s)	177, 273, 281
MalI	GATC	4 cut(s)	35, 185, 345, 410
MboI	GATC	4 cut(s)	33, 183, 343, 408
MboII	GAAGA	7 cut(s)	11, 43, 104, 403, 499, 522, 539
MhlI	GDGCHC	1 cut(s)	371
MluCI	AATT	5 cut(s)	82, 108, 216, 327, 386
MnlI	CCTC	9 cut(s)	277, 285, 367, 412, 433, 442, 445, 514, 571
MseI	TTAA	2 cut(s)	261, 326
MslI	CAYNNNNRTG	1 cut(s)	303
MspA1I	CMGCKG	1 cut(s)	470
Mva1269I	GAATGC	1 cut(s)	455
MwoI	GCNNNNNNNGC	1 cut(s)	434
NdeII	GATC	4 cut(s)	33, 183, 343, 408
NheI	GCTAGC	1 cut(s)	272
NlaIII	CATG	5 cut(s)	149, 302, 316, 418, 481
NlaIV	GGNNCC	1 cut(s)	58
NspI	RCATGY	1 cut(s)	302
NspV	TTCGAA	1 cut(s)	80
PaeI	GCATGC	1 cut(s)	302
PceI	AGGCCT	1 cut(s)	422
PctI	GAATGC	1 cut(s)	455
PfeI	GAWTC	1 cut(s)	490
PkrI	GCNGC	2 cut(s)	297, 472
PspN4I	GGNNCC	1 cut(s)	58
PspPI	GGNCC	1 cut(s)	57
RsaI	GTAC	2 cut(s)	482, 566
RsaNI	GTAC	2 cut(s)	481, 565
RseI	CAYNNNNRTG	1 cut(s)	303
SaqAI	TTAA	2 cut(s)	261, 326
SatI	GCNGC	2 cut(s)	296, 471
Sau3AI	GATC	4 cut(s)	33, 183, 343, 408
Sau96I	GGNCC	1 cut(s)	57
SduI	GDGCHC	1 cut(s)	371
SetI	ASST	6 cut(s)	65, 79, 213, 278, 364, 525
SfaNI	GCATC	1 cut(s)	277
SfuI	TTCGAA	1 cut(s)	80
SinI	GGWCC	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	303
SphI	GCATGC	1 cut(s)	302
Sse9I	AATT	5 cut(s)	82, 108, 216, 327, 386
SseBI	AGGCCT	1 cut(s)	422
SsiI	CCGC	1 cut(s)	468
SspMI	CTAG	3 cut(s)	177, 273, 281
StuI	AGGCCT	1 cut(s)	422
TaqI	TCGA	4 cut(s)	80, 123, 192, 403
TasI	AATT	5 cut(s)	82, 108, 216, 327, 386
TatI	WGTACW	1 cut(s)	480
TfiI	GAWTC	1 cut(s)	490
Tru1I	TTAA	2 cut(s)	261, 326
Tru9I	TTAA	2 cut(s)	261, 326
TscAI	CASTG	1 cut(s)	557
TseI	GCWGC	2 cut(s)	295, 470
TspDTI	ATGAA	4 cut(s)	17, 109, 403, 448
TspRI	CASTG	1 cut(s)	557
VpaK11BI	GGWCC	1 cut(s)	57
XapI	RAATTY	2 cut(s)	82, 216
XceI	RCATGY	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	355
XspI	CTAG	3 cut(s)	177, 273, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.