AT4G18360

(S)-2-hydroxy-acid oxidase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
10145895 .. 10148764
2870 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G18360.3

Sequence Viewer

Length: 1107 bp
ATGGAGATAACAAACGTGATGGAATATGAGAAGATCGCAAAGGAGAAATTACCAAAGATGGTTTATGATTACTATGCATCTGGTGCTGAAGATCAATGGACTCTTCAAGAGAATCGAAACGCTTTCTCTAGGATTCTATTTAGGCCTCGGATTCTTATCGATGTAAGCAAGATTGATGTGAGCACAACGGTTTTAGGGTTTAATATTTCTATGCCAATTATGATTGCTCCTACTGCAATGCAGAAAATGGCTCATCCTGATGGCGAGCTTGCAACCGCGAGAGCTACTTCTGCTGCTGGAACAATCATGACTTTATCTTCATGGGCTACTTGTAGTGTTGAGGAAGTTGCTTCAACCGGACCAGGGATTCGTTTTTTCCAACTTTATGTTTATAAGGATAGAAATGTGGTTATACAGCTTGTGAAACGAGCTGAAGAAGCTGGATTCAAAGCTATTGCTCTTACTGTAGATACTCCAAGGCTTGGACGCAGAGAATCTGACATCAAAAACAGATTCGCGCTTCCTCGAGGTCTAACGTTGAAGAACTTCGAAGGGTTGGATCTTGGGAAAATAGACAAGACGAATGACTCAGGGCTAGCTTCATATGTTGCTGGTCAAGTTGATCAATCACTTAGCTGGAAGGATATAAAATGGCTCCAATCTATCACAAGCTTGCCAATTCTTGTCAAGGGTGTTATTACAGCTGAGGATGCAAGAATTGCTGTTGAATATGGAGCTGCAGGGATAATAGTCTCTAACCACGGAGCTCGTCAGCTAGATTATGTTCCTGCAACTATAGTGGCCTTAGAAGAGGTGGTTAAAGCCGTGGAGGGTCGGATTCCGGTTTTTCTTGACGGTGGGGTTCGCCGTGGAACCGATGTCTTTAAGGCATTGGCTCTTGGCGCTTCAGGTGTCTTTGTCGGGAGGCCGAGCTTGTTCTCGCTTGCAGCGGATGGAGAAGCGGGAGTTAGGAAGATGCTACAAATGCTAAGAGACGAGTTTGAGCTTACAATGGCACTAAGTGGTTGCCGTTCACTGAGAGAGATCAGCCGAACCCACATCAAGACTGATTGGGACACTCCTCATTACCTCTCGGCCAAGCTGTAG

Protein Analysis

368

Amino Acids

40.48

Weight (kDa)

8.36

Isoelectric Point (pI)

33.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMN_dh PF01070 13 - 239 3.8e-78 FMN-dependent dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 393
AbsI CCTCGAGG 1 cut(s) 525
AccB7I CCANNNNNTGG 1 cut(s) 482
AccII CGCG 2 cut(s) 278, 518
AciI CCGC 3 cut(s) 276, 950, 962
AclI AACGTT 1 cut(s) 536
AclWI GGATC 1 cut(s) 567
AcoI YGGCCR 1 cut(s) 1095
AcuI CTGAAG 3 cut(s) 108, 453, 891
AdeI CACNNNGTG 1 cut(s) 1022
AfiI CCNNNNNNNGG 2 cut(s) 363, 482
AgsI TTSAA 5 cut(s) 107, 354, 448, 541, 728
AjnI CCWGG 1 cut(s) 361
Alw21I GWGCWC 2 cut(s) 185, 769
Alw26I GTCTC 2 cut(s) 757, 987
AlwI GGATC 1 cut(s) 567
Ama87I CYCGRG 1 cut(s) 525
AoxI GGCC 4 cut(s) 143, 801, 926, 1095
ApeKI GCWGC 3 cut(s) 293, 737, 947
ArsI GACNNNNNNTTYG 2 cut(s) 351, 383
Asp700I GAANNNNTTC 1 cut(s) 545
AspLEI GCGC 2 cut(s) 520, 905
AspS9I GGNCC 1 cut(s) 359
AsuII TTCGAA 1 cut(s) 549
AsuNHI GCTAGC 1 cut(s) 595
AvaI CYCGRG 1 cut(s) 525
AvaII GGWCC 1 cut(s) 359
BanII GRGCYC 1 cut(s) 769
Bbv12I GWGCWC 2 cut(s) 185, 769
BbvCI CCTCAGC 1 cut(s) 705
BbvI GCAGC 3 cut(s) 280, 724, 959
BccI CCATC 4 cut(s) 13, 52, 254, 947
BceAI ACGGC 3 cut(s) 809, 852, 1014
BciT130I CCWGG 1 cut(s) 363
BclI TGATCA 1 cut(s) 622
BcoDI GTCTC 2 cut(s) 757, 987
BfaI CTAG 3 cut(s) 129, 596, 776
BfmI CTRYAG 4 cut(s) 465, 738, 795, 1103
BfoI RGCGCY 1 cut(s) 906
BisI GCNGC 3 cut(s) 294, 738, 948
BlsI GCNGC 3 cut(s) 295, 739, 949
Bme1390I CCNGG 1 cut(s) 363
Bme18I GGWCC 1 cut(s) 359
BmeT110I CYCGRG 1 cut(s) 525
BmgT120I GGNCC 1 cut(s) 359
BmiI GGNNCC 2 cut(s) 656, 874
BmrFI CCNGG 1 cut(s) 363
BmsI GCATC 3 cut(s) 86, 700, 966
BmtI GCTAGC 1 cut(s) 599
Bpu10I CCTNAGC 1 cut(s) 705
Bpu14I TTCGAA 1 cut(s) 549
Bsa29I ATCGAT 1 cut(s) 159
BsaBI GATNNNNATC 1 cut(s) 155
BsaJI CCNNGG 6 cut(s) 146, 362, 476, 760, 825, 868
BsaWI WCCGGW 2 cut(s) 356, 841
Bsc4I CCNNNNNNNGG 2 cut(s) 363, 482
Bse3DI GCAATG 1 cut(s) 243
Bse8I GATNNNNATC 1 cut(s) 155
BseBI CCWGG 1 cut(s) 363
BseCI ATCGAT 1 cut(s) 159
BseDI CCNNGG 6 cut(s) 146, 362, 476, 760, 825, 868
BseGI GGATG 3 cut(s) 253, 715, 958
BseJI GATNNNNATC 1 cut(s) 155
BseLI CCNNNNNNNGG 2 cut(s) 363, 482
BseMI GCAATG 1 cut(s) 243
BseMII CTCAG 3 cut(s) 603, 696, 1028
BseRI GAGGAG 1 cut(s) 1071
BseXI GCAGC 3 cut(s) 280, 724, 959
Bsh1236I CGCG 2 cut(s) 278, 518
BshFI GGCC 4 cut(s) 145, 803, 928, 1097
BshVI ATCGAT 1 cut(s) 159
BsiHKAI GWGCWC 2 cut(s) 185, 769
BsiHKCI CYCGRG 1 cut(s) 525
BsiSI CCGG 2 cut(s) 357, 842
BslFI GGGAC 1 cut(s) 1088
BslI CCNNNNNNNGG 2 cut(s) 363, 482
BsmAI GTCTC 2 cut(s) 757, 987
BsmBI CGTCTC 1 cut(s) 987
BsmFI GGGAC 1 cut(s) 1088
BsnI GGCC 4 cut(s) 145, 803, 928, 1097
BsoBI CYCGRG 1 cut(s) 525
Bsp119I TTCGAA 1 cut(s) 549
Bsp1286I GDGCHC 2 cut(s) 185, 769
Bsp143I GATC 5 cut(s) 33, 91, 559, 622, 1044
BspACI CCGC 3 cut(s) 276, 950, 962
BspANI GGCC 4 cut(s) 145, 803, 928, 1097
BspCNI CTCAG 3 cut(s) 602, 697, 1029
BspDI ATCGAT 1 cut(s) 159
BspFNI CGCG 2 cut(s) 278, 518
BspHI TCATGA 1 cut(s) 306
BspLI GGNNCC 2 cut(s) 656, 874
BspMAI CTGCAG 1 cut(s) 742
BspOI GCTAGC 1 cut(s) 599
BspPI GGATC 1 cut(s) 567
BspT104I TTCGAA 1 cut(s) 549
BsrDI GCAATG 1 cut(s) 243
BssECI CCNNGG 6 cut(s) 146, 362, 476, 760, 825, 868
BssMI GATC 5 cut(s) 33, 91, 559, 622, 1044
BssT1I CCWWGG 1 cut(s) 476
Bst2UI CCWGG 1 cut(s) 363
Bst4CI ACNGT 3 cut(s) 190, 466, 857
Bst6I CTCTTC 2 cut(s) 108, 804
BstAPI GCANNNNNTGC 2 cut(s) 83, 719
BstBI TTCGAA 1 cut(s) 549
BstC8I GCNNGC 5 cut(s) 266, 270, 597, 674, 945
BstDEI CTNAG 7 cut(s) 589, 632, 705, 805, 989, 1019, 1037
BstDSI CCRYGG 3 cut(s) 760, 825, 868
BstF5I GGATG 3 cut(s) 253, 715, 958
BstFNI CGCG 2 cut(s) 278, 518
BstH2I RGCGCY 1 cut(s) 906
BstHHI GCGC 2 cut(s) 520, 905
BstKTI GATC 5 cut(s) 36, 94, 562, 625, 1047
BstMAI GTCTC 2 cut(s) 757, 987
BstMBI GATC 5 cut(s) 33, 91, 559, 622, 1044
BstMWI GCNNNNNNNGC 8 cut(s) 83, 233, 290, 437, 710, 719, 902, 985
BstNI CCWGG 1 cut(s) 363
BstSCI CCNGG 1 cut(s) 361
BstSFI CTRYAG 4 cut(s) 465, 738, 795, 1103
BstUI CGCG 2 cut(s) 278, 518
BstV1I GCAGC 3 cut(s) 280, 724, 959
BstX2I RGATCY 1 cut(s) 559
BstYI RGATCY 1 cut(s) 559
Bsu15I ATCGAT 1 cut(s) 159
BsuRI GGCC 4 cut(s) 145, 803, 928, 1097
BsuTUI ATCGAT 1 cut(s) 159
BtgI CCRYGG 3 cut(s) 760, 825, 868
BtsCI GGATG 3 cut(s) 253, 715, 958
BtsIMutI CAGTG 1 cut(s) 1034
Cac8I GCNNGC 5 cut(s) 266, 270, 597, 674, 945
CciI TCATGA 1 cut(s) 306
CfoI GCGC 2 cut(s) 520, 905
Cfr13I GGNCC 1 cut(s) 359
ClaI ATCGAT 1 cut(s) 159
CseI GACGC 1 cut(s) 495
CspCI CAANNNNNGTGG 2 cut(s) 780, 815
CviAII CATG 2 cut(s) 307, 321
DdeI CTNAG 7 cut(s) 589, 632, 705, 805, 989, 1019, 1037
DpnI GATC 5 cut(s) 35, 93, 561, 624, 1046
DpnII GATC 5 cut(s) 33, 91, 559, 622, 1044
DraIII CACNNNGTG 1 cut(s) 1022
EaeI YGGCCR 1 cut(s) 1095
Eam1104I CTCTTC 2 cut(s) 108, 804
EarI CTCTTC 2 cut(s) 108, 804
Ecl136II GAGCTC 1 cut(s) 767
Eco130I CCWWGG 1 cut(s) 476
Eco147I AGGCCT 1 cut(s) 145
Eco24I GRGCYC 1 cut(s) 769
Eco47I GGWCC 1 cut(s) 359
Eco53kI GAGCTC 1 cut(s) 767
Eco57I CTGAAG 3 cut(s) 108, 453, 891
Eco88I CYCGRG 1 cut(s) 525
EcoICRI GAGCTC 1 cut(s) 767
EcoRII CCWGG 1 cut(s) 361
EcoT14I CCWWGG 1 cut(s) 476
EcoT22I ATGCAT 1 cut(s) 79
EcoT38I GRGCYC 1 cut(s) 769
ErhI CCWWGG 1 cut(s) 476
Esp3I CGTCTC 1 cut(s) 987
FaeI CATG 2 cut(s) 310, 324
FaqI GGGAC 1 cut(s) 1088
FatI CATG 2 cut(s) 306, 320
FauI CCCGC 1 cut(s) 955
FauNDI CATATG 1 cut(s) 604
FbaI TGATCA 1 cut(s) 622
Fnu4HI GCNGC 3 cut(s) 294, 738, 948
FokI GGATG 3 cut(s) 240, 722, 965
FriOI GRGCYC 1 cut(s) 769
Fsp4HI GCNGC 3 cut(s) 294, 738, 948
FspBI CTAG 3 cut(s) 129, 596, 776
GlaI GCGC 2 cut(s) 519, 904
GluI GCNGC 3 cut(s) 294, 738, 948
HaeII RGCGCY 1 cut(s) 906
HaeIII GGCC 4 cut(s) 145, 803, 928, 1097
HapII CCGG 2 cut(s) 357, 842
HgaI GACGC 1 cut(s) 495
HhaI GCGC 2 cut(s) 520, 905
Hin1II CATG 2 cut(s) 310, 324
Hin6I GCGC 2 cut(s) 518, 903
HinP1I GCGC 2 cut(s) 518, 903
HindIII AAGCTT 1 cut(s) 670
HpaII CCGG 2 cut(s) 357, 842
Hpy166II GTNNAC 1 cut(s) 1034
Hpy188I TCNGA 3 cut(s) 150, 499, 837
Hpy188III TCNNGA 6 cut(s) 107, 257, 307, 851, 922, 1063
Hpy8I GTNNAC 1 cut(s) 1034
HpyAV CCTTC 2 cut(s) 545, 634
HpyCH4III ACNGT 3 cut(s) 190, 466, 857
HpyCH4IV ACGT 2 cut(s) 15, 536
HpyCH4V TGCA 8 cut(s) 77, 236, 241, 272, 713, 740, 791, 947
HpyF10VI GCNNNNNNNGC 8 cut(s) 83, 233, 290, 437, 710, 719, 902, 985
HpyF3I CTNAG 7 cut(s) 589, 632, 705, 805, 989, 1019, 1037
HpySE526I ACGT 2 cut(s) 15, 536
Hsp92II CATG 2 cut(s) 310, 324
HspAI GCGC 2 cut(s) 518, 903
Ksp22I TGATCA 1 cut(s) 622
Kzo9I GATC 5 cut(s) 33, 91, 559, 622, 1044
LmnI GCTCC 4 cut(s) 232, 660, 734, 764
Lsp1109I GCAGC 3 cut(s) 280, 724, 959
LweI GCATC 3 cut(s) 86, 700, 966
MaeI CTAG 3 cut(s) 129, 596, 776
MaeII ACGT 2 cut(s) 15, 536
MalI GATC 5 cut(s) 35, 93, 561, 624, 1046
MboI GATC 5 cut(s) 33, 91, 559, 622, 1044
MboII GAAGA 8 cut(s) 43, 95, 101, 309, 446, 553, 821, 985
MflI RGATCY 1 cut(s) 559
MhlI GDGCHC 2 cut(s) 185, 769
MluCI AATT 4 cut(s) 47, 216, 678, 717
MlyI GAGTC 2 cut(s) 94, 581
MmeI TCCRAC 3 cut(s) 403, 537, 815
Mph1103I ATGCAT 1 cut(s) 79
MroXI GAANNNNTTC 1 cut(s) 545
MseI TTAA 3 cut(s) 201, 819, 885
MslI CAYNNNNRTG 1 cut(s) 258
MspA1I CMGCKG 2 cut(s) 704, 950
MspI CCGG 2 cut(s) 357, 842
MspR9I CCNGG 1 cut(s) 363
MvaI CCWGG 1 cut(s) 363
MvnI CGCG 2 cut(s) 278, 518
MwoI GCNNNNNNNGC 8 cut(s) 83, 233, 290, 437, 710, 719, 902, 985
NdeI CATATG 1 cut(s) 604
NdeII GATC 5 cut(s) 33, 91, 559, 622, 1044
NheI GCTAGC 1 cut(s) 595
NlaIII CATG 2 cut(s) 310, 324
NlaIV GGNNCC 2 cut(s) 656, 874
NmeAIII GCCGAG 2 cut(s) 954, 1073
NsiI ATGCAT 1 cut(s) 79
NspV TTCGAA 1 cut(s) 549
PaeR7I CTCGAG 1 cut(s) 525
PagI TCATGA 1 cut(s) 306
PceI AGGCCT 1 cut(s) 145
PdmI GAANNNNTTC 1 cut(s) 545
PfeI GAWTC 8 cut(s) 112, 133, 151, 367, 444, 494, 513, 838
PflMI CCANNNNNTGG 1 cut(s) 482
PkrI GCNGC 3 cut(s) 295, 739, 949
PleI GAGTC 2 cut(s) 94, 581
PpsI GAGTC 2 cut(s) 94, 581
PsiI TTATAA 1 cut(s) 393
Psp124BI GAGCTC 1 cut(s) 769
Psp1406I AACGTT 1 cut(s) 536
Psp6I CCWGG 1 cut(s) 361
PspGI CCWGG 1 cut(s) 361
PspN4I GGNNCC 2 cut(s) 656, 874
PspPI GGNCC 1 cut(s) 359
PspXI VCTCGAGB 1 cut(s) 525
PstI CTGCAG 1 cut(s) 742
PsuI RGATCY 1 cut(s) 559
PvuII CAGCTG 1 cut(s) 704
RseI CAYNNNNRTG 1 cut(s) 258
SacI GAGCTC 1 cut(s) 769
SaqAI TTAA 3 cut(s) 201, 819, 885
SatI GCNGC 3 cut(s) 294, 738, 948
Sau3AI GATC 5 cut(s) 33, 91, 559, 622, 1044
Sau96I GGNCC 1 cut(s) 359
SchI GAGTC 2 cut(s) 94, 581
ScrFI CCNGG 1 cut(s) 363
SduI GDGCHC 2 cut(s) 185, 769
SfaNI GCATC 3 cut(s) 86, 700, 966
SfcI CTRYAG 4 cut(s) 465, 738, 795, 1103
Sfr274I CTCGAG 1 cut(s) 525
SfuI TTCGAA 1 cut(s) 549
SinI GGWCC 1 cut(s) 359
SlaI CTCGAG 1 cut(s) 525
SmiMI CAYNNNNRTG 1 cut(s) 258
SmlI CTYRAG 1 cut(s) 525
SmoI CTYRAG 1 cut(s) 525
Sse9I AATT 4 cut(s) 47, 216, 678, 717
SseBI AGGCCT 1 cut(s) 145
SsiI CCGC 3 cut(s) 276, 950, 962
SspI AATATT 1 cut(s) 205
SspMI CTAG 3 cut(s) 129, 596, 776
SstI GAGCTC 1 cut(s) 769
StuI AGGCCT 1 cut(s) 145
StyD4I CCNGG 1 cut(s) 361
StyI CCWWGG 1 cut(s) 476
TaaI ACNGT 3 cut(s) 190, 466, 857
TaiI ACGT 2 cut(s) 18, 539
TaqI TCGA 4 cut(s) 115, 159, 526, 549
TasI AATT 4 cut(s) 47, 216, 678, 717
TfiI GAWTC 8 cut(s) 112, 133, 151, 367, 444, 494, 513, 838
Tru1I TTAA 3 cut(s) 201, 819, 885
Tru9I TTAA 3 cut(s) 201, 819, 885
TscAI CASTG 1 cut(s) 1041
TseI GCWGC 3 cut(s) 293, 737, 947
TspDTI ATGAA 2 cut(s) 309, 591
TspGWI ACGGA 1 cut(s) 777
TspRI CASTG 1 cut(s) 1041
Van91I CCANNNNNTGG 1 cut(s) 482
VpaK11BI GGWCC 1 cut(s) 359
XhoI CTCGAG 1 cut(s) 525
XmnI GAANNNNTTC 1 cut(s) 545
XspI CTAG 3 cut(s) 129, 596, 776
Zsp2I ATGCAT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.