pycom10g21660

Peroxisomal (S)-2-hydroxy-acid oxidase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
24231520 .. 24233997
2478 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g21660.7

Sequence Viewer

Length: 1047 bp
ATGATTTATGACTACTATGCCTCTGGTGCAGAGGACCAGTGGACTCTCAAGGAGAATGAACGCGCATTTTCGCGGATTTTGTTTCGACCTCGTATTCTTATAGATGTTAGCAAGATAGACTTGAGAACAACTGTTCTGGGCTTCAACATTTCGATGCCGATCATGATTGCACCAACAGCCATGCAGAAGATGGCTCACCCTGAAGGTGAGTATGCAACGGCAAGAGCAGCATCCGCAGCCGACACAATTATGACACTGTCGTCTTGGGCTACTTCCAGTGTTGAAGAGGTTGCGTCAACAGGACCTGGCGTTCGCTTTCTCCAACTCTATGTGCACAAAGACAGAAATGTTGTTGCACAGCTTGTTAAAAGAGCTGAGAGGGCCGGTTTCAAGGCAATAGCTCTCACTGTGGACACTCCGAGGCTTGGGCGCAGGGAGGCAGATATCAAGAACAGATTTGTTTTGCCACCAAACTTAACATTGAAGAACTTTGAGGATTTGGATCTCGGAAAGATGGATAAGACCAATGATTCTGGACTTGCATCTTATGTTGCTGGACAAATCGACCGGTCTCTCAGCTGGAAGGATATACAATGGCTTCAGACAATCACCAAATTACCAATTCTTGTTAAGGGTGTAATTACTGCGGAGGATGCACGACTAGCTGTACAATATGGAGCTGCAGGAATTATCGTCTCCAACCACGGAGCTCGCCAACTCGATTATGTCCCTGCAACTATTATGGCACTGGAAGAGGTCGTCAAAGCCGCACAAGGCCAAATTCCTGTGTTTTTGGATGGTGGAGTAAGGCGAGGAACGGATGTTTTTAAAGCTCTGGCCCTTGGCGCATCGGGCGTATTTATTGGTAGACCGGTGGTGTTCTCGTTAGCAGCAGATGGTGAGGCTGGTGTAAGGAAAGTTCTTCAAATGCTTCGTGACGAGTTTGAGCTAACCATGGCGTTGAGTGGTTGCCGTTCGCTGAAGGAGATCACGCGGAACCACATTATAACTGAATGGGATCGTCCTCGCATTGCACCGAGATTATAA

Protein Analysis

349

Amino Acids

38.39

Weight (kDa)

9.19

Isoelectric Point (pI)

34.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1007, 1045
AasI GACNNNNNNGTC 1 cut(s) 259
AccI GTMKAC 1 cut(s) 868
AccII CGCG 3 cut(s) 63, 73, 994
AciI CCGC 5 cut(s) 73, 234, 647, 768, 994
AclWI GGATC 2 cut(s) 510, 1026
AcsI RAATTY 1 cut(s) 780
AcuI CTGAAG 3 cut(s) 222, 584, 1001
AfaI GTAC 1 cut(s) 669
AfiI CCNNNNNNNGG 1 cut(s) 425
AgeI ACCGGT 2 cut(s) 567, 871
AgsI TTSAA 5 cut(s) 145, 284, 391, 484, 926
AjnI CCWGG 1 cut(s) 304
AloI GAACNNNNNNTCC 2 cut(s) 294, 326
AluBI AGCT 9 cut(s) 361, 374, 401, 579, 665, 680, 710, 833, 949
AluI AGCT 9 cut(s) 361, 374, 401, 579, 665, 680, 710, 833, 949
Alw21I GWGCWC 2 cut(s) 336, 712
Alw26I GTCTC 2 cut(s) 576, 700
Alw44I GTGCAC 1 cut(s) 332
AlwI GGATC 2 cut(s) 510, 1026
AlwNI CAGNNNCTG 1 cut(s) 305
AoxI GGCC 3 cut(s) 381, 775, 837
ApaLI GTGCAC 1 cut(s) 332
ApeKI GCWGC 4 cut(s) 227, 236, 680, 890
ApoI RAATTY 1 cut(s) 780
ArsI GACNNNNNNTTYG 2 cut(s) 294, 326
AsiGI ACCGGT 2 cut(s) 567, 871
AspLEI GCGC 3 cut(s) 65, 432, 848
AspS9I GGNCC 4 cut(s) 34, 302, 381, 838
AsuHPI GGTGA 4 cut(s) 188, 218, 601, 911
AvaII GGWCC 2 cut(s) 34, 302
BaeGI GKGCMC 1 cut(s) 336
BanII GRGCYC 1 cut(s) 712
Bbv12I GWGCWC 2 cut(s) 336, 712
BbvI GCAGC 4 cut(s) 239, 248, 667, 902
BccI CCATC 4 cut(s) 184, 508, 791, 890
BceAI ACGGC 2 cut(s) 234, 957
BciT130I CCWGG 1 cut(s) 306
BcoDI GTCTC 2 cut(s) 576, 700
BfaI CTAG 1 cut(s) 662
BfmI CTRYAG 1 cut(s) 681
BisI GCNGC 5 cut(s) 228, 237, 681, 768, 891
BlsI GCNGC 5 cut(s) 229, 238, 682, 769, 892
Bme1390I CCNGG 1 cut(s) 306
Bme18I GGWCC 2 cut(s) 34, 302
BmgT120I GGNCC 4 cut(s) 34, 302, 381, 838
BmiI GGNNCC 1 cut(s) 998
BmrFI CCNGG 1 cut(s) 306
BmsI GCATC 5 cut(s) 144, 239, 551, 643, 857
BpuEI CTTGAG 2 cut(s) 32, 142
BsaBI GATNNNNATC 2 cut(s) 158, 501
BsaI GGTCTC 1 cut(s) 576
BsaJI CCNNGG 4 cut(s) 419, 703, 841, 954
BsaWI WCCGGW 2 cut(s) 567, 871
Bsc4I CCNNNNNNNGG 1 cut(s) 425
Bse118I RCCGGY 3 cut(s) 383, 567, 871
Bse1I ACTGG 3 cut(s) 37, 276, 753
Bse3DI GCAATG 1 cut(s) 1029
Bse8I GATNNNNATC 2 cut(s) 158, 501
BseBI CCWGG 1 cut(s) 306
BseDI CCNNGG 4 cut(s) 419, 703, 841, 954
BseGI GGATG 4 cut(s) 230, 658, 802, 826
BseJI GATNNNNATC 2 cut(s) 158, 501
BseLI CCNNNNNNNGG 1 cut(s) 425
BseMI GCAATG 1 cut(s) 1029
BseMII CTCAG 2 cut(s) 366, 589
BseNI ACTGG 3 cut(s) 37, 276, 753
BseSI GKGCMC 1 cut(s) 336
BseXI GCAGC 4 cut(s) 239, 248, 667, 902
BsgI GTGCAG 1 cut(s) 48
Bsh1236I CGCG 3 cut(s) 63, 73, 994
Bsh1285I CGRYCG 1 cut(s) 568
BshFI GGCC 3 cut(s) 383, 777, 839
BshTI ACCGGT 2 cut(s) 567, 871
BsiEI CGRYCG 1 cut(s) 568
BsiHKAI GWGCWC 2 cut(s) 336, 712
BsiSI CCGG 3 cut(s) 384, 568, 872
BslFI GGGAC 1 cut(s) 713
BslI CCNNNNNNNGG 1 cut(s) 425
BsmAI GTCTC 2 cut(s) 576, 700
BsmBI CGTCTC 1 cut(s) 700
BsmFI GGGAC 1 cut(s) 713
BsnI GGCC 3 cut(s) 383, 777, 839
Bso31I GGTCTC 1 cut(s) 576
Bsp1286I GDGCHC 2 cut(s) 336, 712
Bsp1407I TGTACA 1 cut(s) 667
Bsp143I GATC 4 cut(s) 159, 502, 987, 1018
Bsp19I CCATGG 1 cut(s) 954
BspACI CCGC 5 cut(s) 73, 234, 647, 768, 994
BspANI GGCC 3 cut(s) 383, 777, 839
BspCNI CTCAG 2 cut(s) 367, 588
BspFNI CGCG 3 cut(s) 63, 73, 994
BspHI TCATGA 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 998
BspMAI CTGCAG 1 cut(s) 685
BspPI GGATC 2 cut(s) 510, 1026
BspTNI GGTCTC 1 cut(s) 576
BsrDI GCAATG 1 cut(s) 1029
BsrFI RCCGGY 3 cut(s) 383, 567, 871
BsrGI TGTACA 1 cut(s) 667
BsrI ACTGG 3 cut(s) 37, 276, 753
BssAI RCCGGY 3 cut(s) 383, 567, 871
BssECI CCNNGG 4 cut(s) 419, 703, 841, 954
BssMI GATC 4 cut(s) 159, 502, 987, 1018
BssT1I CCWWGG 2 cut(s) 841, 954
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 3 cut(s) 133, 258, 409
Bst6I CTCTTC 2 cut(s) 279, 747
BstAUI TGTACA 1 cut(s) 667
BstC8I GCNNGC 1 cut(s) 712
BstDEI CTNAG 2 cut(s) 375, 575
BstDSI CCRYGG 2 cut(s) 703, 954
BstF5I GGATG 4 cut(s) 230, 658, 802, 826
BstFNI CGCG 3 cut(s) 63, 73, 994
BstHHI GCGC 3 cut(s) 65, 432, 848
BstKTI GATC 4 cut(s) 162, 505, 990, 1021
BstMAI GTCTC 2 cut(s) 576, 700
BstMBI GATC 4 cut(s) 159, 502, 987, 1018
BstMCI CGRYCG 1 cut(s) 568
BstNI CCWGG 1 cut(s) 306
BstSCI CCNGG 1 cut(s) 304
BstSFI CTRYAG 1 cut(s) 681
BstSLI GKGCMC 1 cut(s) 336
BstUI CGCG 3 cut(s) 63, 73, 994
BstV1I GCAGC 4 cut(s) 239, 248, 667, 902
BstX2I RGATCY 1 cut(s) 502
BstYI RGATCY 1 cut(s) 502
BsuRI GGCC 3 cut(s) 383, 777, 839
BtgI CCRYGG 2 cut(s) 703, 954
BtsCI GGATG 4 cut(s) 230, 658, 802, 826
BtsIMutI CAGTG 5 cut(s) 44, 254, 283, 405, 746
Cac8I GCNNGC 1 cut(s) 712
CaiI CAGNNNCTG 1 cut(s) 305
CciI TCATGA 1 cut(s) 162
CfoI GCGC 3 cut(s) 65, 432, 848
Cfr10I RCCGGY 3 cut(s) 383, 567, 871
Cfr13I GGNCC 4 cut(s) 34, 302, 381, 838
CseI GACGC 1 cut(s) 282
Csp6I GTAC 1 cut(s) 668
CspAI ACCGGT 2 cut(s) 567, 871
CviAII CATG 3 cut(s) 163, 181, 955
CviQI GTAC 1 cut(s) 668
DdeI CTNAG 2 cut(s) 375, 575
DpnI GATC 4 cut(s) 161, 504, 989, 1020
DpnII GATC 4 cut(s) 159, 502, 987, 1018
DraI TTTAAA 1 cut(s) 829
DrdI GACNNNNNNGTC 1 cut(s) 259
DseDI GACNNNNNNGTC 1 cut(s) 259
Eam1104I CTCTTC 2 cut(s) 279, 747
EarI CTCTTC 2 cut(s) 279, 747
Ecl136II GAGCTC 1 cut(s) 710
Eco130I CCWWGG 2 cut(s) 841, 954
Eco24I GRGCYC 1 cut(s) 712
Eco31I GGTCTC 1 cut(s) 576
Eco32I GATATC 1 cut(s) 445
Eco47I GGWCC 2 cut(s) 34, 302
Eco53kI GAGCTC 1 cut(s) 710
Eco57I CTGAAG 3 cut(s) 222, 584, 1001
EcoICRI GAGCTC 1 cut(s) 710
EcoO109I RGGNCCY 1 cut(s) 302
EcoRII CCWGG 1 cut(s) 304
EcoRV GATATC 1 cut(s) 445
EcoT14I CCWWGG 2 cut(s) 841, 954
EcoT38I GRGCYC 1 cut(s) 712
ErhI CCWWGG 2 cut(s) 841, 954
Esp3I CGTCTC 1 cut(s) 700
FaeI CATG 3 cut(s) 166, 184, 958
FalI AAGNNNNNCTT 2 cut(s) 104, 136
FaqI GGGAC 1 cut(s) 713
FatI CATG 3 cut(s) 162, 180, 954
FblI GTMKAC 1 cut(s) 868
Fnu4HI GCNGC 5 cut(s) 228, 237, 681, 768, 891
FokI GGATG 4 cut(s) 217, 665, 809, 833
FriOI GRGCYC 1 cut(s) 712
Fsp4HI GCNGC 5 cut(s) 228, 237, 681, 768, 891
FspBI CTAG 1 cut(s) 662
GlaI GCGC 3 cut(s) 64, 431, 847
GluI GCNGC 5 cut(s) 228, 237, 681, 768, 891
HaeIII GGCC 3 cut(s) 383, 777, 839
HapII CCGG 3 cut(s) 384, 568, 872
HgaI GACGC 1 cut(s) 282
HhaI GCGC 3 cut(s) 65, 432, 848
Hin1II CATG 3 cut(s) 166, 184, 958
Hin6I GCGC 3 cut(s) 63, 430, 846
HinP1I GCGC 3 cut(s) 63, 430, 846
HincII GTYRAC 1 cut(s) 297
HindII GTYRAC 1 cut(s) 297
HinfI GANTC 2 cut(s) 43, 530
HpaII CCGG 3 cut(s) 384, 568, 872
HphI GGTGA 4 cut(s) 188, 218, 601, 911
Hpy166II GTNNAC 5 cut(s) 42, 297, 334, 412, 869
Hpy188I TCNGA 3 cut(s) 420, 509, 603
Hpy188III TCNNGA 4 cut(s) 163, 448, 534, 935
Hpy8I GTNNAC 5 cut(s) 42, 297, 334, 412, 869
HpyAV CCTTC 3 cut(s) 197, 577, 976
HpyCH4III ACNGT 3 cut(s) 133, 258, 409
HpyF3I CTNAG 2 cut(s) 375, 575
Hsp92II CATG 3 cut(s) 166, 184, 958
HspAI GCGC 3 cut(s) 63, 430, 846
Kzo9I GATC 4 cut(s) 159, 502, 987, 1018
LmnI GCTCC 2 cut(s) 677, 707
Lsp1109I GCAGC 4 cut(s) 239, 248, 667, 902
LweI GCATC 5 cut(s) 144, 239, 551, 643, 857
MaeI CTAG 1 cut(s) 662
MaeIII GTNAC 1 cut(s) 935
MalI GATC 4 cut(s) 161, 504, 989, 1020
MboI GATC 4 cut(s) 159, 502, 987, 1018
MboII GAAGA 5 cut(s) 199, 296, 496, 764, 914
MflI RGATCY 1 cut(s) 502
MhlI GDGCHC 2 cut(s) 336, 712
MluCI AATT 6 cut(s) 246, 614, 621, 639, 687, 780
MlyI GAGTC 1 cut(s) 37
MmeI TCCRAC 2 cut(s) 346, 723
MseI TTAA 4 cut(s) 366, 476, 630, 828
MslI CAYNNNNRTG 2 cut(s) 152, 248
MspA1I CMGCKG 1 cut(s) 579
MspI CCGG 3 cut(s) 384, 568, 872
MspR9I CCNGG 1 cut(s) 306
MvaI CCWGG 1 cut(s) 306
MvnI CGCG 3 cut(s) 63, 73, 994
NcoI CCATGG 1 cut(s) 954
NdeII GATC 4 cut(s) 159, 502, 987, 1018
NlaIII CATG 3 cut(s) 166, 184, 958
NlaIV GGNNCC 1 cut(s) 998
NmuCI GTSAC 1 cut(s) 935
PagI TCATGA 1 cut(s) 162
PfeI GAWTC 1 cut(s) 530
PflFI GACNNNGTC 1 cut(s) 256
PinAI ACCGGT 2 cut(s) 567, 871
PkrI GCNGC 5 cut(s) 229, 238, 682, 769, 892
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
PpuMI RGGWCCY 1 cut(s) 302
PsiI TTATAA 2 cut(s) 1007, 1045
Psp124BI GAGCTC 1 cut(s) 712
Psp5II RGGWCCY 1 cut(s) 302
Psp6I CCWGG 1 cut(s) 304
PspGI CCWGG 1 cut(s) 304
PspN4I GGNNCC 1 cut(s) 998
PspPI GGNCC 4 cut(s) 34, 302, 381, 838
PspPPI RGGWCCY 1 cut(s) 302
PsrI GAACNNNNNNTAC 2 cut(s) 903, 935
PstI CTGCAG 1 cut(s) 685
PstNI CAGNNNCTG 1 cut(s) 305
PsuI RGATCY 1 cut(s) 502
PsyI GACNNNGTC 1 cut(s) 256
PvuII CAGCTG 1 cut(s) 579
RsaI GTAC 1 cut(s) 669
RsaNI GTAC 1 cut(s) 668
RseI CAYNNNNRTG 2 cut(s) 152, 248
SacI GAGCTC 1 cut(s) 712
SaqAI TTAA 4 cut(s) 366, 476, 630, 828
SatI GCNGC 5 cut(s) 228, 237, 681, 768, 891
Sau3AI GATC 4 cut(s) 159, 502, 987, 1018
Sau96I GGNCC 4 cut(s) 34, 302, 381, 838
SchI GAGTC 1 cut(s) 37
ScrFI CCNGG 1 cut(s) 306
SduI GDGCHC 2 cut(s) 336, 712
SfaNI GCATC 5 cut(s) 144, 239, 551, 643, 857
SfcI CTRYAG 1 cut(s) 681
SinI GGWCC 2 cut(s) 34, 302
SmiMI CAYNNNNRTG 2 cut(s) 152, 248
SmlI CTYRAG 2 cut(s) 47, 121
SmoI CTYRAG 2 cut(s) 47, 121
Sse9I AATT 6 cut(s) 246, 614, 621, 639, 687, 780
SsiI CCGC 5 cut(s) 73, 234, 647, 768, 994
SspMI CTAG 1 cut(s) 662
SstI GAGCTC 1 cut(s) 712
StyD4I CCNGG 1 cut(s) 304
StyI CCWWGG 2 cut(s) 841, 954
TaaI ACNGT 3 cut(s) 133, 258, 409
TaqI TCGA 4 cut(s) 85, 152, 564, 720
TasI AATT 6 cut(s) 246, 614, 621, 639, 687, 780
TatI WGTACW 1 cut(s) 667
TauI GCSGC 1 cut(s) 770
TfiI GAWTC 1 cut(s) 530
Tru1I TTAA 4 cut(s) 366, 476, 630, 828
Tru9I TTAA 4 cut(s) 366, 476, 630, 828
TscAI CASTG 5 cut(s) 44, 261, 283, 412, 753
TseFI GTSAC 1 cut(s) 935
TseI GCWGC 4 cut(s) 227, 236, 680, 890
Tsp45I GTSAC 1 cut(s) 935
TspDTI ATGAA 1 cut(s) 72
TspGWI ACGGA 2 cut(s) 720, 833
TspRI CASTG 5 cut(s) 44, 261, 283, 412, 753
Tth111I GACNNNGTC 1 cut(s) 256
VneI GTGCAC 1 cut(s) 332
VpaK11BI GGWCC 2 cut(s) 34, 302
XapI RAATTY 1 cut(s) 780
XcmI CCANNNNNNNNNTGG 1 cut(s) 187
XmiI GTMKAC 1 cut(s) 868
XspI CTAG 1 cut(s) 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.