Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002723

Physical Location & Seq

Genomic Coordinates Reverse (-)

10391941 .. 10395615

Gene Structure 3675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG112700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGAGAACAACAGTTTTGGGATTCAATATTTCAATGCCCATCATGATAGCTCCTACAGCCATGCAGAAGATGGCTCACCCTGAAGGAGAGTTTGCAACAGCAAGAGCAGCATCTGCAGCTGACACAATTATGACACTGTCCTCTTGGGCTACTTCCAGTGTCGAAGAGGTCGCGTCAACAGGACCTGGCATTCGTTTTTTCCAACTCTATGTGTACAAAGACAGGAATGTGGTTGCACAGCTTGTCAAAAGAGCTGAGAAAGCTGGTTTCAAGGCAATAGCCCTTACAGTGGACACTCCACGGCTTGGGCGCAGGGAGGCTGATATCAAGAACAGATTTACTTTACCATCAAATTTGACATTGAAGAACTTTGAGAATATTGATCTCGGAAAGATGGACAAGACCAATGATTCTGGACTAGCATCATATGTTGCTGGACAAATTGACCGGTCTCTCAGCTGGAAGGACGTGAAATGGCTTCAGACAATCACCCATTTACCGATTCTTGTAAAGGGTGTGATTACAGCTGAGGATGCACAACTAGCTGTACAATATGGAGCTGCAGGAATAATTGTCTCGAACCATGGAGCTCGCCAGCTTGATTATGTCCCCTCAACTATTATGGCTTTGGAAGAGGTCGTCAAAGCTACACGAGGGGCAATTCCTGTCTTCTTGGATGGTGGAGTGAGGCGAGGAACGGATGTTTTCAAAGCTCTGGCTCTTGGAGCATCGGGTGTATTTGTGAGTAAAATCGACACTTATATATCAGAAGCTAGATGCTGCAAATGTGGAACTTATAAGATCTTTTGTGATCTATTTTATAACCTCAGAACTAACCTGATACTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009853 GO:0009987 GO:0010033 GO:0010109 GO:0016020 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0022626 GO:0030054 GO:0031323 GO:0032991 GO:0035821 GO:0042221 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050665 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0055044 GO:0055114 GO:0065007 GO:0072593 GO:0098542 GO:1903409 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

283

Amino Acids

30.88

Weight (kDa)

9.21

Isoelectric Point (pI)

27.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	1 - 250	1.4e-97	FMN-dependent dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18360 AT4G18360 AT4G18360 AT4G18360
fragaria_vesca	FvH4_3g05330 FvH4_3g05330 FvH4_3g05330 FvH4_3g05330
malus_domestica	MD05G1281900.v1.1 MD10G1260600.v1.1
prunus_persica	Prupe.4G082600_v2.0.a1 Prupe.4G082600_v2.0.a1 Prupe.4G082600_v2.0.a1 Prupe.4G082600_v2.0.a1 Prupe.4G082600_v2.0.a1
pyrus_communis	pycom05g26180 pycom10g21660
rosa_chinensis	RchiOBHm_Chr5g0014411 RchiOBHm_Chr6g0278091 RchiOBHm_Chr6g0278121 RchiOBHm_Chr6g0278131
rosa_laevigata	RLG00000013240 RLG00000032106
rosa_multiflora	Rmu_sc0000791.1_g000023 Rmu_sc0000791.1_g000034 Rmu_sc0000791.1_g000050 Rmu_ssc0000422.1_g000039
rosa_roxburghii	Rroxscaffold_1G00062170 Rroxscaffold_7G00190510 Rroxscaffold_7G00190520
rosa_rugosa	Rorug05G0017900 Rorug06G0114800
rosa_samantha	Rh5AG112700 Rh6BG228600 Rh6CG231000
rosa_wichuraiana	Rw5G009780 Rw6G019610 Rw6G019640 Rw6G019650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	798, 822
AccB7I	CCANNNNNTGG	1 cut(s)	305
AccII	CGCG	1 cut(s)	173
AcsI	RAATTY	1 cut(s)	352
AcuI	CTGAAG	2 cut(s)	102, 464
AfaI	GTAC	2 cut(s)	215, 549
AfiI	CCNNNNNNNGG	2 cut(s)	289, 305
AgeI	ACCGGT	1 cut(s)	447
AgsI	TTSAA	5 cut(s)	25, 33, 271, 364, 709
AjiI	CACGTC	1 cut(s)	469
AjnI	CCWGG	1 cut(s)	184
Alw21I	GWGCWC	1 cut(s)	592
Alw26I	GTCTC	2 cut(s)	456, 580
AlwNI	CAGNNNCTG	2 cut(s)	113, 185
ApeKI	GCWGC	4 cut(s)	107, 116, 560, 780
ApoI	RAATTY	1 cut(s)	352
ArsI	GACNNNNNNTTYG	2 cut(s)	174, 206
AsiGI	ACCGGT	1 cut(s)	447
AspLEI	GCGC	1 cut(s)	312
AspS9I	GGNCC	1 cut(s)	182
AsuHPI	GGTGA	2 cut(s)	68, 481
AvaII	GGWCC	1 cut(s)	182
BaeI	ACNNNNGTAYC	1 cut(s)	833
BanII	GRGCYC	1 cut(s)	592
BauI	CACGAG	1 cut(s)	651
BbsI	GAAGAC	1 cut(s)	661
Bbv12I	GWGCWC	1 cut(s)	592
BbvCI	CCTCAGC	1 cut(s)	528
BbvI	GCAGC	4 cut(s)	119, 128, 547, 767
BccI	CCATC	5 cut(s)	47, 64, 355, 388, 671
BceAI	ACGGC	1 cut(s)	317
BciT130I	CCWGG	1 cut(s)	186
BcoDI	GTCTC	2 cut(s)	456, 580
BfaI	CTAG	3 cut(s)	419, 542, 774
BfmI	CTRYAG	3 cut(s)	54, 114, 561
BglII	AGATCT	1 cut(s)	801
BisI	GCNGC	4 cut(s)	108, 117, 561, 781
BlsI	GCNGC	4 cut(s)	109, 118, 562, 782
Bme1390I	CCNGG	1 cut(s)	186
Bme18I	GGWCC	1 cut(s)	182
BmgBI	CACGTC	1 cut(s)	469
BmgT120I	GGNCC	1 cut(s)	182
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	5 cut(s)	119, 431, 523, 737, 767
BpiI	GAAGAC	1 cut(s)	661
Bpu10I	CCTNAGC	1 cut(s)	528
BsaI	GGTCTC	1 cut(s)	456
BsaJI	CCNNGG	2 cut(s)	299, 583
BsaWI	WCCGGW	1 cut(s)	447
Bsc4I	CCNNNNNNNGG	2 cut(s)	289, 305
Bse118I	RCCGGY	1 cut(s)	447
Bse1I	ACTGG	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	186
BseDI	CCNNGG	2 cut(s)	299, 583
BseGI	GGATG	3 cut(s)	538, 682, 706
BseLI	CCNNNNNNNGG	2 cut(s)	289, 305
BseMII	CTCAG	4 cut(s)	246, 469, 519, 841
BseNI	ACTGG	1 cut(s)	156
BseXI	GCAGC	4 cut(s)	119, 128, 547, 767
Bsh1236I	CGCG	1 cut(s)	173
BshTI	ACCGGT	1 cut(s)	447
BsiHKAI	GWGCWC	1 cut(s)	592
BsiSI	CCGG	1 cut(s)	448
BslFI	GGGAC	1 cut(s)	593
BslI	CCNNNNNNNGG	2 cut(s)	289, 305
BsmAI	GTCTC	2 cut(s)	456, 580
BsmFI	GGGAC	1 cut(s)	593
BsmI	GAATGC	1 cut(s)	189
Bso31I	GGTCTC	1 cut(s)	456
Bsp1286I	GDGCHC	1 cut(s)	592
Bsp1407I	TGTACA	2 cut(s)	213, 547
Bsp143I	GATC	3 cut(s)	382, 801, 811
Bsp19I	CCATGG	1 cut(s)	583
BspCNI	CTCAG	4 cut(s)	247, 468, 520, 840
BspFNI	CGCG	1 cut(s)	173
BspHI	TCATGA	1 cut(s)	42
BspMAI	CTGCAG	2 cut(s)	118, 565
BspTNI	GGTCTC	1 cut(s)	456
BsrFI	RCCGGY	1 cut(s)	447
BsrGI	TGTACA	2 cut(s)	213, 547
BsrI	ACTGG	1 cut(s)	156
BssAI	RCCGGY	1 cut(s)	447
BssECI	CCNNGG	2 cut(s)	299, 583
BssMI	GATC	3 cut(s)	382, 801, 811
BssSI	CACGAG	1 cut(s)	651
BssT1I	CCWWGG	1 cut(s)	583
Bst2BI	CACGAG	1 cut(s)	651
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	3 cut(s)	13, 138, 289
Bst6I	CTCTTC	2 cut(s)	159, 627
BstAPI	GCANNNNNTGC	1 cut(s)	113
BstAUI	TGTACA	2 cut(s)	213, 547
BstC8I	GCNNGC	2 cut(s)	592, 596
BstDEI	CTNAG	4 cut(s)	255, 455, 528, 827
BstDSI	CCRYGG	2 cut(s)	299, 583
BstF5I	GGATG	3 cut(s)	538, 682, 706
BstFNI	CGCG	1 cut(s)	173
BstHHI	GCGC	1 cut(s)	312
BstKTI	GATC	3 cut(s)	385, 804, 814
BstMAI	GTCTC	2 cut(s)	456, 580
BstMBI	GATC	3 cut(s)	382, 801, 811
BstMWI	GCNNNNNNNGC	8 cut(s)	56, 107, 113, 116, 260, 533, 542, 725
BstNI	CCWGG	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	184
BstSFI	CTRYAG	3 cut(s)	54, 114, 561
BstUI	CGCG	1 cut(s)	173
BstV1I	GCAGC	4 cut(s)	119, 128, 547, 767
BstV2I	GAAGAC	1 cut(s)	661
BstX2I	RGATCY	1 cut(s)	801
BstYI	RGATCY	1 cut(s)	801
BtgI	CCRYGG	2 cut(s)	299, 583
BtrI	CACGTC	1 cut(s)	469
BtsCI	GGATG	3 cut(s)	538, 682, 706
BtsIMutI	CAGTG	3 cut(s)	134, 163, 294
Cac8I	GCNNGC	2 cut(s)	592, 596
CaiI	CAGNNNCTG	2 cut(s)	113, 185
CciI	TCATGA	1 cut(s)	42
CfoI	GCGC	1 cut(s)	312
Cfr10I	RCCGGY	1 cut(s)	447
Cfr13I	GGNCC	1 cut(s)	182
CseI	GACGC	1 cut(s)	162
Csp6I	GTAC	2 cut(s)	214, 548
CspAI	ACCGGT	1 cut(s)	447
CviAII	CATG	3 cut(s)	43, 61, 584
CviQI	GTAC	2 cut(s)	214, 548
DdeI	CTNAG	4 cut(s)	255, 455, 528, 827
DpnI	GATC	3 cut(s)	384, 803, 813
DpnII	GATC	3 cut(s)	382, 801, 811
Eam1104I	CTCTTC	2 cut(s)	159, 627
EarI	CTCTTC	2 cut(s)	159, 627
Ecl136II	GAGCTC	1 cut(s)	590
Eco130I	CCWWGG	1 cut(s)	583
Eco24I	GRGCYC	1 cut(s)	592
Eco31I	GGTCTC	1 cut(s)	456
Eco32I	GATATC	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	182
Eco53kI	GAGCTC	1 cut(s)	590
Eco57I	CTGAAG	2 cut(s)	102, 464
EcoICRI	GAGCTC	1 cut(s)	590
EcoO109I	RGGNCCY	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	184
EcoRV	GATATC	1 cut(s)	325
EcoT14I	CCWWGG	1 cut(s)	583
EcoT38I	GRGCYC	1 cut(s)	592
ErhI	CCWWGG	1 cut(s)	583
FaeI	CATG	3 cut(s)	46, 64, 587
FaqI	GGGAC	1 cut(s)	593
FatI	CATG	3 cut(s)	42, 60, 583
FauNDI	CATATG	1 cut(s)	427
Fnu4HI	GCNGC	4 cut(s)	108, 117, 561, 781
FokI	GGATG	3 cut(s)	545, 689, 713
FriOI	GRGCYC	1 cut(s)	592
Fsp4HI	GCNGC	4 cut(s)	108, 117, 561, 781
FspBI	CTAG	3 cut(s)	419, 542, 774
GlaI	GCGC	1 cut(s)	311
GluI	GCNGC	4 cut(s)	108, 117, 561, 781
HapII	CCGG	1 cut(s)	448
HgaI	GACGC	1 cut(s)	162
HhaI	GCGC	1 cut(s)	312
Hin1II	CATG	3 cut(s)	46, 64, 587
Hin6I	GCGC	1 cut(s)	310
HinP1I	GCGC	1 cut(s)	310
HincII	GTYRAC	1 cut(s)	177
HindII	GTYRAC	1 cut(s)	177
HinfI	GANTC	3 cut(s)	21, 410, 502
HpaII	CCGG	1 cut(s)	448
HphI	GGTGA	2 cut(s)	68, 481
Hpy166II	GTNNAC	3 cut(s)	177, 214, 292
Hpy188I	TCNGA	4 cut(s)	389, 483, 769, 830
Hpy188III	TCNNGA	4 cut(s)	43, 328, 414, 577
Hpy8I	GTNNAC	3 cut(s)	177, 214, 292
HpyAV	CCTTC	2 cut(s)	77, 457
HpyCH4III	ACNGT	3 cut(s)	13, 138, 289
HpyCH4IV	ACGT	1 cut(s)	468
HpyCH4V	TGCA	7 cut(s)	64, 95, 116, 236, 536, 563, 783
HpyF10VI	GCNNNNNNNGC	8 cut(s)	56, 107, 113, 116, 260, 533, 542, 725
HpyF3I	CTNAG	4 cut(s)	255, 455, 528, 827
HpySE526I	ACGT	1 cut(s)	468
Hsp92II	CATG	3 cut(s)	46, 64, 587
HspAI	GCGC	1 cut(s)	310
Kzo9I	GATC	3 cut(s)	382, 801, 811
LmnI	GCTCC	4 cut(s)	55, 557, 587, 725
Lsp1109I	GCAGC	4 cut(s)	119, 128, 547, 767
LweI	GCATC	5 cut(s)	119, 431, 523, 737, 767
MaeI	CTAG	3 cut(s)	419, 542, 774
MaeII	ACGT	1 cut(s)	468
MalI	GATC	3 cut(s)	384, 803, 813
MboI	GATC	3 cut(s)	382, 801, 811
MboII	GAAGA	5 cut(s)	79, 176, 376, 644, 661
MflI	RGATCY	1 cut(s)	801
MhlI	GDGCHC	1 cut(s)	592
MluCI	AATT	5 cut(s)	126, 352, 441, 570, 660
MmeI	TCCRAC	1 cut(s)	226
MslI	CAYNNNNRTG	1 cut(s)	128
MspA1I	CMGCKG	3 cut(s)	119, 459, 527
MspI	CCGG	1 cut(s)	448
MspR9I	CCNGG	1 cut(s)	186
Mva1269I	GAATGC	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	186
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	8 cut(s)	56, 107, 113, 116, 260, 533, 542, 725
NcoI	CCATGG	1 cut(s)	583
NdeI	CATATG	1 cut(s)	427
NdeII	GATC	3 cut(s)	382, 801, 811
NlaIII	CATG	3 cut(s)	46, 64, 587
PagI	TCATGA	1 cut(s)	42
PctI	GAATGC	1 cut(s)	189
PfeI	GAWTC	3 cut(s)	21, 410, 502
PflFI	GACNNNGTC	1 cut(s)	136
PflMI	CCANNNNNTGG	1 cut(s)	305
PinAI	ACCGGT	1 cut(s)	447
PkrI	GCNGC	4 cut(s)	109, 118, 562, 782
PpuMI	RGGWCCY	1 cut(s)	182
PsiI	TTATAA	2 cut(s)	798, 822
Psp124BI	GAGCTC	1 cut(s)	592
Psp5II	RGGWCCY	1 cut(s)	182
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
PspPI	GGNCC	1 cut(s)	182
PspPPI	RGGWCCY	1 cut(s)	182
PstI	CTGCAG	2 cut(s)	118, 565
PstNI	CAGNNNCTG	2 cut(s)	113, 185
PsuI	RGATCY	1 cut(s)	801
PsyI	GACNNNGTC	1 cut(s)	136
PvuII	CAGCTG	3 cut(s)	119, 459, 527
RsaI	GTAC	2 cut(s)	215, 549
RsaNI	GTAC	2 cut(s)	214, 548
RseI	CAYNNNNRTG	1 cut(s)	128
SacI	GAGCTC	1 cut(s)	592
SatI	GCNGC	4 cut(s)	108, 117, 561, 781
Sau3AI	GATC	3 cut(s)	382, 801, 811
Sau96I	GGNCC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	186
SduI	GDGCHC	1 cut(s)	592
SfaNI	GCATC	5 cut(s)	119, 431, 523, 737, 767
SfcI	CTRYAG	3 cut(s)	54, 114, 561
SinI	GGWCC	1 cut(s)	182
SmiMI	CAYNNNNRTG	1 cut(s)	128
Sse9I	AATT	5 cut(s)	126, 352, 441, 570, 660
SspI	AATATT	2 cut(s)	28, 379
SspMI	CTAG	3 cut(s)	419, 542, 774
SstI	GAGCTC	1 cut(s)	592
StyD4I	CCNGG	1 cut(s)	184
StyI	CCWWGG	1 cut(s)	583
TaaI	ACNGT	3 cut(s)	13, 138, 289
TaiI	ACGT	1 cut(s)	471
TaqI	TCGA	3 cut(s)	162, 578, 753
TasI	AATT	5 cut(s)	126, 352, 441, 570, 660
TatI	WGTACW	2 cut(s)	213, 547
TfiI	GAWTC	3 cut(s)	21, 410, 502
TscAI	CASTG	3 cut(s)	141, 163, 294
TseI	GCWGC	4 cut(s)	107, 116, 560, 780
TspGWI	ACGGA	1 cut(s)	713
TspRI	CASTG	3 cut(s)	141, 163, 294
Tth111I	GACNNNGTC	1 cut(s)	136
Van91I	CCANNNNNTGG	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	182
XapI	RAATTY	1 cut(s)	352
XcmI	CCANNNNNNNNNTGG	1 cut(s)	67
XspI	CTAG	3 cut(s)	419, 542, 774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.