Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002723

Physical Location & Seq

Genomic Coordinates Reverse (-)

39274052 .. 39277133

Gene Structure 3082 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G019650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGATCACATAACCAATGTTTCTGAGTATGAAGCAATTGCAAAGAAGAATTTGCCGAAGATGCTTTACGAGTACTATGCATCCGGTGCAGAGGACCAGTGGACTCTTAAGGAGAATCTACTTGCCTTTTCTAGGATTTTGTTCCGACCTCGAATTCTTATTGATGTAAGCACAATAGACTTGAGCACAACTATTTTGGGCTTCAAAGTGTCAATGCCCATCATGATTGCTCCTACAGGCATGCAGAAGATGGCTCACCCTGAAGGAGAGTGTGCAACCGCAAGAGCAGCATCTGCAGCTGGCACAATTATGACACTGTCCACTATGGCTAATTCCAGCATTGAAGAAGTTGCCTCAACAGGACCTGGTATTCGCTTGTTCCAACTCTATGTGTTCAAAGACAGGAATCTGGTTACACAGCTTGTCAGAAGGGCTGAGAGGGCTGGTTACAAGGCAATAGTCCTCACTGCTGACACTCCGAGGCTCGGGCGCAGGGAGGCTGATATCAAGAACAGGTTTACTATGTCACCAAGTTTGACATTGAAAAACTTCGAAAATTTGGATATTGGAAAGATTGATGAGACCAATGGTTCTGGATTAGCATCATATGTTGCTGGACTATTTGACCGCTCTCTCAGCTGGAAGGATGTGAAATGGCTTCAGAGTATCACTACATTACCAATTCTGATAAAGGGTGTAATTACTGCCGAGGATACAAGGTTATGCATACAAGCTGGAGCTGCAGGAATAATTGTATCCAATCATGGAGCTCGGCAATTAGATTATGTCCCTGCAACTATTATGGCTTTGGAAGAGGTCGTCAAAGCTGTAGAGGGTCAAATTCCTGTTTTTCTGGATGGTGGAGTGAGGCGAGGAACAGATGTTTTTAAAGCTTTGGCTCTTGGAGCATCGGGTGTATTTATTGGTAGACCAGTGGTGTTCTCATTAGCTGCTGCCGGTGAGGCTGGTGTAAGGAAAGTACTTCAAATGCTGAGTGATGAGCTTGAGCTAACAATGGCGTTAAGTGGTTGCTGCTCGCTAAAGGAGATAAGGCGTGACCACATTGTGGCAGAATGGGACGCTCCTCGTATTGCTCCCAGATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009853 GO:0009987 GO:0010033 GO:0010109 GO:0016020 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0022626 GO:0030054 GO:0031323 GO:0032991 GO:0035821 GO:0042221 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050665 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0055044 GO:0055114 GO:0065007 GO:0072593 GO:0098542 GO:1903409 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

368

Amino Acids

40.14

Weight (kDa)

8.26

Isoelectric Point (pI)

34.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	14 - 355	3.3e-138	FMN-dependent dehydrogenase
NMO	PF03060	228 - 343	1.1e-07	Nitronate monooxygenase
IMPDH	PF00478	266 - 312	6.5e-06	IMP dehydrogenase / GMP reductase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18360 AT4G18360 AT4G18360 AT4G18360
fragaria_vesca	FvH4_3g05330 FvH4_3g05330 FvH4_3g05330 FvH4_3g05330
malus_domestica	MD05G1281900.v1.1 MD10G1260600.v1.1
prunus_persica	Prupe.4G082600_v2.0.a1 Prupe.4G082600_v2.0.a1 Prupe.4G082600_v2.0.a1 Prupe.4G082600_v2.0.a1 Prupe.4G082600_v2.0.a1
pyrus_communis	pycom05g26180 pycom10g21660
rosa_chinensis	RchiOBHm_Chr5g0014411 RchiOBHm_Chr6g0278091 RchiOBHm_Chr6g0278121 RchiOBHm_Chr6g0278131
rosa_laevigata	RLG00000013240 RLG00000032106
rosa_multiflora	Rmu_sc0000791.1_g000023 Rmu_sc0000791.1_g000034 Rmu_sc0000791.1_g000050 Rmu_ssc0000422.1_g000039
rosa_roxburghii	Rroxscaffold_1G00062170 Rroxscaffold_7G00190510 Rroxscaffold_7G00190520
rosa_rugosa	Rorug05G0017900 Rorug06G0114800
rosa_samantha	Rh5AG112700 Rh6BG228600 Rh6CG231000
rosa_wichuraiana	Rw5G009780 Rw6G019610 Rw6G019640 Rw6G019650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1066
AccBSI	CCGCTC	1 cut(s)	630
AccI	GTMKAC	1 cut(s)	928
AciI	CCGC	2 cut(s)	279, 628
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	4 cut(s)	49, 153, 556, 840
AcuI	CTGAAG	2 cut(s)	282, 644
AdeI	CACNNNGTG	1 cut(s)	1066
AfaI	GTAC	2 cut(s)	74, 981
AfiI	CCNNNNNNNGG	3 cut(s)	132, 485, 1066
AflII	CTTAAG	1 cut(s)	107
AgsI	TTSAA	5 cut(s)	205, 344, 397, 544, 986
AjnI	CCWGG	1 cut(s)	364
Alw21I	GWGCWC	2 cut(s)	188, 772
Alw26I	GTCTC	1 cut(s)	575
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	2 cut(s)	293, 365
Ama87I	CYCGRG	1 cut(s)	485
ApeKI	GCWGC	6 cut(s)	287, 296, 740, 950, 953, 1032
ApoI	RAATTY	4 cut(s)	49, 153, 556, 840
ArsI	GACNNNNNNTTYG	2 cut(s)	354, 386
Asp700I	GAANNNNTTC	1 cut(s)	548
AspLEI	GCGC	1 cut(s)	492
AspS9I	GGNCC	2 cut(s)	94, 362
AsuHPI	GGTGA	3 cut(s)	248, 519, 971
AsuII	TTCGAA	1 cut(s)	552
AvaI	CYCGRG	1 cut(s)	485
AvaII	GGWCC	2 cut(s)	94, 362
BanII	GRGCYC	1 cut(s)	772
BarI	GAAGNNNNNNTAC	2 cut(s)	50, 82
Bbv12I	GWGCWC	2 cut(s)	188, 772
BbvI	GCAGC	6 cut(s)	299, 308, 727, 937, 940, 1019
BccI	CCATC	3 cut(s)	227, 244, 851
BcgI	CGANNNNNNTGC	2 cut(s)	59, 93
BciT130I	CCWGG	1 cut(s)	366
BciVI	GTATCC	2 cut(s)	706, 766
BcoDI	GTCTC	1 cut(s)	575
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	4 cut(s)	234, 294, 741, 828
BfrI	CTTAAG	1 cut(s)	107
BfuI	GTATCC	2 cut(s)	706, 766
BglI	GCCNNNNNGGC	1 cut(s)	962
BisI	GCNGC	6 cut(s)	288, 297, 741, 951, 954, 1033
BlsI	GCNGC	6 cut(s)	289, 298, 742, 952, 955, 1034
BmcAI	AGTACT	2 cut(s)	74, 981
Bme1390I	CCNGG	1 cut(s)	366
Bme18I	GGWCC	2 cut(s)	94, 362
BmeT110I	CYCGRG	1 cut(s)	485
BmgT120I	GGNCC	2 cut(s)	94, 362
BmrFI	CCNGG	1 cut(s)	366
BmsI	GCATC	5 cut(s)	51, 89, 299, 611, 917
BpmI	CTGGAG	1 cut(s)	756
Bpu14I	TTCGAA	1 cut(s)	552
BpuEI	CTTGAG	2 cut(s)	202, 1025
BsaBI	GATNNNNATC	1 cut(s)	601
BsaI	GGTCTC	1 cut(s)	575
BsaJI	CCNNGG	2 cut(s)	479, 708
BsaWI	WCCGGW	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	3 cut(s)	132, 485, 1066
Bse118I	RCCGGY	1 cut(s)	956
Bse1I	ACTGG	2 cut(s)	97, 932
Bse8I	GATNNNNATC	1 cut(s)	601
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	2 cut(s)	479, 708
BseGI	GGATG	3 cut(s)	80, 652, 862
BseJI	GATNNNNATC	1 cut(s)	601
BseLI	CCNNNNNNNGG	3 cut(s)	132, 485, 1066
BseMII	CTCAG	4 cut(s)	15, 426, 649, 983
BseNI	ACTGG	2 cut(s)	97, 932
BseRI	GAGGAG	1 cut(s)	1074
BseXI	GCAGC	6 cut(s)	299, 308, 727, 937, 940, 1019
BsgI	GTGCAG	1 cut(s)	108
BsiHKAI	GWGCWC	2 cut(s)	188, 772
BsiHKCI	CYCGRG	1 cut(s)	485
BsiSI	CCGG	2 cut(s)	84, 957
BslFI	GGGAC	2 cut(s)	773, 1091
BslI	CCNNNNNNNGG	3 cut(s)	132, 485, 1066
BsmAI	GTCTC	1 cut(s)	575
BsmFI	GGGAC	2 cut(s)	773, 1091
Bso31I	GGTCTC	1 cut(s)	575
BsoBI	CYCGRG	1 cut(s)	485
Bsp119I	TTCGAA	1 cut(s)	552
Bsp1286I	GDGCHC	2 cut(s)	188, 772
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	2 cut(s)	279, 628
BspCNI	CTCAG	4 cut(s)	16, 427, 648, 984
BspHI	TCATGA	1 cut(s)	222
BspMAI	CTGCAG	2 cut(s)	298, 745
BspPI	GGATC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	552
BspTI	CTTAAG	1 cut(s)	107
BspTNI	GGTCTC	1 cut(s)	575
BsrBI	CCGCTC	1 cut(s)	630
BsrFI	RCCGGY	1 cut(s)	956
BsrI	ACTGG	2 cut(s)	97, 932
BssAI	RCCGGY	1 cut(s)	956
BssECI	CCNNGG	2 cut(s)	479, 708
BssMI	GATC	1 cut(s)	4
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	1 cut(s)	318
Bst6I	CTCTTC	1 cut(s)	807
BstAFI	CTTAAG	1 cut(s)	107
BstAPI	GCANNNNNTGC	2 cut(s)	86, 293
BstBI	TTCGAA	1 cut(s)	552
BstC8I	GCNNGC	3 cut(s)	242, 301, 1037
BstDEI	CTNAG	4 cut(s)	24, 435, 635, 992
BstENI	CCTNNNNNAGG	1 cut(s)	130
BstF5I	GGATG	3 cut(s)	80, 652, 862
BstHHI	GCGC	1 cut(s)	492
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	575
BstMBI	GATC	1 cut(s)	4
BstNI	CCWGG	1 cut(s)	366
BstNSI	RCATGY	1 cut(s)	244
BstSCI	CCNGG	1 cut(s)	364
BstSFI	CTRYAG	4 cut(s)	234, 294, 741, 828
BstV1I	GCAGC	6 cut(s)	299, 308, 727, 937, 940, 1019
BsuI	GTATCC	2 cut(s)	706, 766
BtsCI	GGATG	3 cut(s)	80, 652, 862
BtsI	GCAGTG	1 cut(s)	465
BtsIMutI	CAGTG	4 cut(s)	104, 314, 465, 939
Cac8I	GCNNGC	3 cut(s)	242, 301, 1037
CaiI	CAGNNNCTG	2 cut(s)	293, 365
CciI	TCATGA	1 cut(s)	222
CfoI	GCGC	1 cut(s)	492
Cfr10I	RCCGGY	1 cut(s)	956
Cfr13I	GGNCC	2 cut(s)	94, 362
CseI	GACGC	1 cut(s)	1088
CsiI	ACCWGGT	1 cut(s)	364
Csp6I	GTAC	2 cut(s)	73, 980
CviAII	CATG	3 cut(s)	223, 241, 764
CviQI	GTAC	2 cut(s)	73, 980
DdeI	CTNAG	4 cut(s)	24, 435, 635, 992
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
DraI	TTTAAA	1 cut(s)	889
DraIII	CACNNNGTG	1 cut(s)	1066
Eam1104I	CTCTTC	1 cut(s)	807
EarI	CTCTTC	1 cut(s)	807
Ecl136II	GAGCTC	1 cut(s)	770
Eco24I	GRGCYC	1 cut(s)	772
Eco31I	GGTCTC	1 cut(s)	575
Eco32I	GATATC	1 cut(s)	505
Eco47I	GGWCC	2 cut(s)	94, 362
Eco53kI	GAGCTC	1 cut(s)	770
Eco57I	CTGAAG	2 cut(s)	282, 644
Eco88I	CYCGRG	1 cut(s)	485
EcoICRI	GAGCTC	1 cut(s)	770
EcoNI	CCTNNNNNAGG	1 cut(s)	130
EcoO109I	RGGNCCY	1 cut(s)	362
EcoRI	GAATTC	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	364
EcoRV	GATATC	1 cut(s)	505
EcoT22I	ATGCAT	2 cut(s)	82, 728
EcoT38I	GRGCYC	1 cut(s)	772
FaeI	CATG	3 cut(s)	226, 244, 767
FaqI	GGGAC	2 cut(s)	773, 1091
FatI	CATG	3 cut(s)	222, 240, 763
FauNDI	CATATG	1 cut(s)	607
FblI	GTMKAC	1 cut(s)	928
Fnu4HI	GCNGC	6 cut(s)	288, 297, 741, 951, 954, 1033
FokI	GGATG	3 cut(s)	67, 659, 869
FriOI	GRGCYC	1 cut(s)	772
Fsp4HI	GCNGC	6 cut(s)	288, 297, 741, 951, 954, 1033
FspBI	CTAG	1 cut(s)	132
GlaI	GCGC	1 cut(s)	491
GluI	GCNGC	6 cut(s)	288, 297, 741, 951, 954, 1033
GsuI	CTGGAG	1 cut(s)	756
HapII	CCGG	2 cut(s)	84, 957
HgaI	GACGC	1 cut(s)	1088
HhaI	GCGC	1 cut(s)	492
Hin1II	CATG	3 cut(s)	226, 244, 767
Hin6I	GCGC	1 cut(s)	490
HinP1I	GCGC	1 cut(s)	490
HindIII	AAGCTT	1 cut(s)	891
HinfI	GANTC	3 cut(s)	103, 115, 406
HpaII	CCGG	2 cut(s)	84, 957
HphI	GGTGA	3 cut(s)	248, 519, 971
Hpy166II	GTNNAC	4 cut(s)	102, 321, 519, 929
Hpy188I	TCNGA	6 cut(s)	25, 146, 428, 480, 663, 687
Hpy188III	TCNNGA	4 cut(s)	223, 508, 594, 854
Hpy8I	GTNNAC	4 cut(s)	102, 321, 519, 929
HpyAV	CCTTC	3 cut(s)	257, 423, 637
HpyCH4III	ACNGT	1 cut(s)	318
HpyCH4V	TGCA	9 cut(s)	41, 80, 89, 244, 275, 296, 726, 743, 794
HpyF3I	CTNAG	4 cut(s)	24, 435, 635, 992
Hsp92II	CATG	3 cut(s)	226, 244, 767
HspAI	GCGC	1 cut(s)	490
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	6 cut(s)	235, 737, 767, 905, 1087, 1099
Lsp1109I	GCAGC	6 cut(s)	299, 308, 727, 937, 940, 1019
LweI	GCATC	5 cut(s)	51, 89, 299, 611, 917
MabI	ACCWGGT	1 cut(s)	364
MaeI	CTAG	1 cut(s)	132
MaeIII	GTNAC	4 cut(s)	412, 446, 525, 1055
MalI	GATC	1 cut(s)	6
MbiI	CCGCTC	1 cut(s)	630
MboI	GATC	1 cut(s)	4
MboII	GAAGA	5 cut(s)	58, 70, 259, 356, 824
MfeI	CAATTG	1 cut(s)	36
MhlI	GDGCHC	2 cut(s)	188, 772
MlyI	GAGTC	1 cut(s)	97
MmeI	TCCRAC	2 cut(s)	169, 406
Mph1103I	ATGCAT	2 cut(s)	82, 728
MroXI	GAANNNNTTC	1 cut(s)	548
MseI	TTAA	3 cut(s)	108, 888, 1022
MslI	CAYNNNNRTG	1 cut(s)	308
MspA1I	CMGCKG	2 cut(s)	299, 639
MspCI	CTTAAG	1 cut(s)	107
MspI	CCGG	2 cut(s)	84, 957
MspR9I	CCNGG	1 cut(s)	366
MunI	CAATTG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	366
NdeI	CATATG	1 cut(s)	607
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	3 cut(s)	226, 244, 767
NmeAIII	GCCGAG	2 cut(s)	733, 751
NmuCI	GTSAC	2 cut(s)	525, 1055
NsiI	ATGCAT	2 cut(s)	82, 728
NspI	RCATGY	1 cut(s)	244
NspV	TTCGAA	1 cut(s)	552
PaeI	GCATGC	1 cut(s)	244
PagI	TCATGA	1 cut(s)	222
PdmI	GAANNNNTTC	1 cut(s)	548
PfeI	GAWTC	2 cut(s)	115, 406
PflFI	GACNNNGTC	1 cut(s)	316
PflMI	CCANNNNNTGG	1 cut(s)	1066
PkrI	GCNGC	6 cut(s)	289, 298, 742, 952, 955, 1034
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PpuMI	RGGWCCY	1 cut(s)	362
Psp124BI	GAGCTC	1 cut(s)	772
Psp5II	RGGWCCY	1 cut(s)	362
Psp6I	CCWGG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	364
PspPI	GGNCC	2 cut(s)	94, 362
PspPPI	RGGWCCY	1 cut(s)	362
PstI	CTGCAG	2 cut(s)	298, 745
PstNI	CAGNNNCTG	2 cut(s)	293, 365
PsyI	GACNNNGTC	1 cut(s)	316
PvuII	CAGCTG	2 cut(s)	299, 639
RsaI	GTAC	2 cut(s)	74, 981
RsaNI	GTAC	2 cut(s)	73, 980
RseI	CAYNNNNRTG	1 cut(s)	308
SacI	GAGCTC	1 cut(s)	772
SaqAI	TTAA	3 cut(s)	108, 888, 1022
SatI	GCNGC	6 cut(s)	288, 297, 741, 951, 954, 1033
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	2 cut(s)	94, 362
ScaI	AGTACT	2 cut(s)	74, 981
SchI	GAGTC	1 cut(s)	97
ScrFI	CCNGG	1 cut(s)	366
SduI	GDGCHC	2 cut(s)	188, 772
SexAI	ACCWGGT	1 cut(s)	364
SfaNI	GCATC	5 cut(s)	51, 89, 299, 611, 917
SfcI	CTRYAG	4 cut(s)	234, 294, 741, 828
SfuI	TTCGAA	1 cut(s)	552
SinI	GGWCC	2 cut(s)	94, 362
SmiMI	CAYNNNNRTG	1 cut(s)	308
SmlI	CTYRAG	3 cut(s)	107, 181, 1004
SmoI	CTYRAG	3 cut(s)	107, 181, 1004
SphI	GCATGC	1 cut(s)	244
SsiI	CCGC	2 cut(s)	279, 628
SspMI	CTAG	1 cut(s)	132
SstI	GAGCTC	1 cut(s)	772
StyD4I	CCNGG	1 cut(s)	364
TaaI	ACNGT	1 cut(s)	318
TaqI	TCGA	2 cut(s)	151, 552
TatI	WGTACW	2 cut(s)	72, 979
TfiI	GAWTC	2 cut(s)	115, 406
Tru1I	TTAA	3 cut(s)	108, 888, 1022
Tru9I	TTAA	3 cut(s)	108, 888, 1022
TscAI	CASTG	4 cut(s)	104, 321, 472, 939
TseFI	GTSAC	2 cut(s)	525, 1055
TseI	GCWGC	6 cut(s)	287, 296, 740, 950, 953, 1032
Tsp45I	GTSAC	2 cut(s)	525, 1055
TspDTI	ATGAA	1 cut(s)	45
TspRI	CASTG	4 cut(s)	104, 321, 472, 939
Tth111I	GACNNNGTC	1 cut(s)	316
Van91I	CCANNNNNTGG	1 cut(s)	1066
Vha464I	CTTAAG	1 cut(s)	107
VpaK11BI	GGWCC	2 cut(s)	94, 362
XagI	CCTNNNNNAGG	1 cut(s)	130
XapI	RAATTY	4 cut(s)	49, 153, 556, 840
XceI	RCATGY	1 cut(s)	244
XmiI	GTMKAC	1 cut(s)	928
XmnI	GAANNNNTTC	1 cut(s)	548
XspI	CTAG	1 cut(s)	132
ZrmI	AGTACT	2 cut(s)	74, 981
Zsp2I	ATGCAT	2 cut(s)	82, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.