RLG00000032106

Peroxisomal (S)-2-hydroxy-acid oxidase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
10994376 .. 10996817
2442 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032106

Sequence Viewer

Length: 1107 bp
ATGGAGATGATCACCAATGTTTCTGAGTATGAGAAGATTGCAAAGGAGAAATTGCCAAAGATGGTTTATGACTACTATGCATCTGGTGCAGAGGACCAGTGGACTCTTAAGGAGAACCAACGCGCTTTCTCCAGGATTTTGTTTCGACCTCGTATTCTTATTGATGTAAGCAAGATAGACATGAGAACAACAGTTTTGGGATTCAATATTTCAATGCCCATCATGATAGCTCCTACAGCCATGCAGAAGATGGCTCACCCTGAAGGAGAGTTTGCAACAGCAAGAGCAGCATCTGCAGCTGACACAATTATGACACTGTCCTCTTGGGCTACTTCCAGTGTCGAAGAGGTCGCGTCAACAGGACCTGGCATTCGTTTTTTCCAACTCTATGTGTACAAAGACAGGAATGTGGTTGCACAGCTTGTCAAAAGAGCTGAGAAAGCTGGTTTCAAGGCAATAGCCCTTACAGTGGACACTCCACGGCTTGGGCGCAGGGAGGCTGATATCAAGAACAGATTTACTTTACCATCAAATTTGACATTGAAGAACTTTGAGAATATTGATCTCGGAAAGATGGACAAGACCAATGATTCTGGACTAGCATCATATGTTGCTGGACAAATTGACCGGTCTCTCAGCTGGAAGGACGTGAAATGGCTTCAGACAATCACCCATTTACCGATTCTTGTAAAGGGTGTGATTACAGCTGAGGATGCACAACTAGCTGTACAATATGGAGCTGCAGGAATAATTGTCTCGAACCATGGAGCTCGCCAGCTTGATTATGTCCCCTCAACTATTATGGCTTTGGAAGAGGTCGTCAAAGCTACACGAGGGGCAATTCCTGTCTTCTTGGATGGTGGAGTGAGGCGAGGAACGGATGTTTTCAAAGCTCTGGCTCTTGGAGCATCGGGTGTATTTATCGGAAGACCAGTAGTGTTCTCCTTAGCTGCTGCAGGGGAGGCTGGTGTCAGGAAAGTCCTTCAAATGCTCCGGGATGAGTTTGAGCTGACTATGGCATTAAGCGGTTGCCGCTCCCTCAAGGAAATCACCCGAGACCATATCGTAACGGAATGGGATCGTCCTCGTATTGCACCCAAATTATAA

Protein Analysis

369

Amino Acids

40.67

Weight (kDa)

9.3

Isoelectric Point (pI)

30.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMN_dh PF01070 14 - 356 6.4e-140 FMN-dependent dehydrogenase
NMO PF03060 230 - 344 5.1e-06 Nitronate monooxygenase
IMPDH PF00478 267 - 313 6.4e-06 IMP dehydrogenase / GMP reductase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1105
AccB7I CCANNNNNTGG 1 cut(s) 485
AccBSI CCGCTC 1 cut(s) 1035
AccII CGCG 2 cut(s) 123, 353
AciI CCGC 2 cut(s) 1026, 1033
AclWI GGATC 1 cut(s) 1086
AcsI RAATTY 1 cut(s) 532
AcuI CTGAAG 2 cut(s) 282, 644
AfaI GTAC 2 cut(s) 395, 729
AfiI CCNNNNNNNGG 2 cut(s) 469, 485
AflII CTTAAG 1 cut(s) 107
AgeI ACCGGT 1 cut(s) 627
AgsI TTSAA 6 cut(s) 205, 213, 451, 544, 889, 986
AjiI CACGTC 1 cut(s) 649
AjnI CCWGG 2 cut(s) 131, 364
Alw21I GWGCWC 1 cut(s) 772
Alw26I GTCTC 3 cut(s) 636, 760, 1050
AlwI GGATC 1 cut(s) 1086
AlwNI CAGNNNCTG 2 cut(s) 293, 365
Ama87I CYCGRG 1 cut(s) 1053
ApeKI GCWGC 5 cut(s) 287, 296, 740, 950, 953
ApoI RAATTY 1 cut(s) 532
ArsI GACNNNNNNTTYG 2 cut(s) 354, 386
AsiGI ACCGGT 1 cut(s) 627
AspLEI GCGC 2 cut(s) 125, 492
AspS9I GGNCC 2 cut(s) 94, 362
AsuC2I CCSGG 1 cut(s) 995
AsuHPI GGTGA 4 cut(s) 4, 248, 661, 1042
AvaI CYCGRG 1 cut(s) 1053
AvaII GGWCC 2 cut(s) 94, 362
BanII GRGCYC 1 cut(s) 772
BauI CACGAG 1 cut(s) 831
BbsI GAAGAC 2 cut(s) 841, 934
Bbv12I GWGCWC 1 cut(s) 772
BbvCI CCTCAGC 1 cut(s) 708
BbvI GCAGC 5 cut(s) 299, 308, 727, 937, 940
BccI CCATC 6 cut(s) 55, 227, 244, 535, 568, 851
BceAI ACGGC 1 cut(s) 497
BciT130I CCWGG 2 cut(s) 133, 366
BclI TGATCA 1 cut(s) 9
BcnI CCSGG 1 cut(s) 995
BcoDI GTCTC 3 cut(s) 636, 760, 1050
BfaI CTAG 2 cut(s) 599, 722
BfmI CTRYAG 4 cut(s) 234, 294, 741, 954
BfrI CTTAAG 1 cut(s) 107
BisI GCNGC 6 cut(s) 288, 297, 741, 951, 954, 1033
BlsI GCNGC 6 cut(s) 289, 298, 742, 952, 955, 1034
Bme1390I CCNGG 3 cut(s) 133, 366, 995
Bme18I GGWCC 2 cut(s) 94, 362
BmeT110I CYCGRG 1 cut(s) 1053
BmgBI CACGTC 1 cut(s) 649
BmgT120I GGNCC 2 cut(s) 94, 362
BmrFI CCNGG 3 cut(s) 133, 366, 995
BmsI GCATC 5 cut(s) 89, 299, 611, 703, 917
BpiI GAAGAC 2 cut(s) 841, 934
BpmI CTGGAG 1 cut(s) 115
Bpu10I CCTNAGC 2 cut(s) 708, 946
BpuEI CTTGAG 1 cut(s) 1025
BpuMI CCSGG 1 cut(s) 995
BsaI GGTCTC 2 cut(s) 636, 1050
BsaJI CCNNGG 2 cut(s) 479, 763
BsaWI WCCGGW 1 cut(s) 627
Bsc4I CCNNNNNNNGG 2 cut(s) 469, 485
Bse118I RCCGGY 1 cut(s) 627
Bse1I ACTGG 3 cut(s) 97, 336, 932
BseBI CCWGG 2 cut(s) 133, 366
BseDI CCNNGG 2 cut(s) 479, 763
BseGI GGATG 4 cut(s) 718, 862, 886, 1003
BseLI CCNNNNNNNGG 2 cut(s) 469, 485
BseMII CTCAG 4 cut(s) 15, 426, 649, 699
BseNI ACTGG 3 cut(s) 97, 336, 932
BseXI GCAGC 5 cut(s) 299, 308, 727, 937, 940
BsgI GTGCAG 1 cut(s) 108
Bsh1236I CGCG 2 cut(s) 123, 353
BshTI ACCGGT 1 cut(s) 627
BsiHKAI GWGCWC 1 cut(s) 772
BsiHKCI CYCGRG 1 cut(s) 1053
BsiSI CCGG 2 cut(s) 628, 994
BslFI GGGAC 1 cut(s) 773
BslI CCNNNNNNNGG 2 cut(s) 469, 485
BsmAI GTCTC 3 cut(s) 636, 760, 1050
BsmFI GGGAC 1 cut(s) 773
BsmI GAATGC 1 cut(s) 369
Bso31I GGTCTC 2 cut(s) 636, 1050
BsoBI CYCGRG 1 cut(s) 1053
Bsp1286I GDGCHC 1 cut(s) 772
Bsp1407I TGTACA 2 cut(s) 393, 727
Bsp143I GATC 3 cut(s) 9, 562, 1078
Bsp19I CCATGG 1 cut(s) 763
BspACI CCGC 2 cut(s) 1026, 1033
BspCNI CTCAG 4 cut(s) 16, 427, 648, 700
BspFNI CGCG 2 cut(s) 123, 353
BspHI TCATGA 1 cut(s) 222
BspMAI CTGCAG 3 cut(s) 298, 745, 958
BspPI GGATC 1 cut(s) 1086
BspTI CTTAAG 1 cut(s) 107
BspTNI GGTCTC 2 cut(s) 636, 1050
BsrBI CCGCTC 1 cut(s) 1035
BsrFI RCCGGY 1 cut(s) 627
BsrGI TGTACA 2 cut(s) 393, 727
BsrI ACTGG 3 cut(s) 97, 336, 932
BssAI RCCGGY 1 cut(s) 627
BssECI CCNNGG 2 cut(s) 479, 763
BssMI GATC 3 cut(s) 9, 562, 1078
BssSI CACGAG 1 cut(s) 831
BssT1I CCWWGG 1 cut(s) 763
Bst2BI CACGAG 1 cut(s) 831
Bst2UI CCWGG 2 cut(s) 133, 366
Bst4CI ACNGT 3 cut(s) 193, 318, 469
Bst6I CTCTTC 2 cut(s) 339, 807
BstAFI CTTAAG 1 cut(s) 107
BstAPI GCANNNNNTGC 2 cut(s) 86, 293
BstAUI TGTACA 2 cut(s) 393, 727
BstC8I GCNNGC 2 cut(s) 772, 776
BstDEI CTNAG 5 cut(s) 24, 435, 635, 708, 946
BstDSI CCRYGG 2 cut(s) 479, 763
BstF5I GGATG 4 cut(s) 718, 862, 886, 1003
BstFNI CGCG 2 cut(s) 123, 353
BstHHI GCGC 2 cut(s) 125, 492
BstKTI GATC 3 cut(s) 12, 565, 1081
BstMAI GTCTC 3 cut(s) 636, 760, 1050
BstMBI GATC 3 cut(s) 9, 562, 1078
BstNI CCWGG 2 cut(s) 133, 366
BstSCI CCNGG 3 cut(s) 131, 364, 993
BstSFI CTRYAG 4 cut(s) 234, 294, 741, 954
BstUI CGCG 2 cut(s) 123, 353
BstV1I GCAGC 5 cut(s) 299, 308, 727, 937, 940
BstV2I GAAGAC 2 cut(s) 841, 934
BtgI CCRYGG 2 cut(s) 479, 763
BtrI CACGTC 1 cut(s) 649
BtsCI GGATG 4 cut(s) 718, 862, 886, 1003
BtsIMutI CAGTG 4 cut(s) 104, 314, 343, 474
Cac8I GCNNGC 2 cut(s) 772, 776
CaiI CAGNNNCTG 2 cut(s) 293, 365
CciI TCATGA 1 cut(s) 222
CfoI GCGC 2 cut(s) 125, 492
Cfr10I RCCGGY 1 cut(s) 627
Cfr13I GGNCC 2 cut(s) 94, 362
CseI GACGC 1 cut(s) 342
Csp6I GTAC 2 cut(s) 394, 728
CspAI ACCGGT 1 cut(s) 627
CviAII CATG 4 cut(s) 181, 223, 241, 764
CviQI GTAC 2 cut(s) 394, 728
DdeI CTNAG 5 cut(s) 24, 435, 635, 708, 946
DpnI GATC 3 cut(s) 11, 564, 1080
DpnII GATC 3 cut(s) 9, 562, 1078
Eam1104I CTCTTC 2 cut(s) 339, 807
EarI CTCTTC 2 cut(s) 339, 807
Ecl136II GAGCTC 1 cut(s) 770
Eco130I CCWWGG 1 cut(s) 763
Eco24I GRGCYC 1 cut(s) 772
Eco31I GGTCTC 2 cut(s) 636, 1050
Eco32I GATATC 1 cut(s) 505
Eco47I GGWCC 2 cut(s) 94, 362
Eco53kI GAGCTC 1 cut(s) 770
Eco57I CTGAAG 2 cut(s) 282, 644
Eco88I CYCGRG 1 cut(s) 1053
EcoICRI GAGCTC 1 cut(s) 770
EcoO109I RGGNCCY 1 cut(s) 362
EcoRII CCWGG 2 cut(s) 131, 364
EcoRV GATATC 1 cut(s) 505
EcoT14I CCWWGG 1 cut(s) 763
EcoT22I ATGCAT 1 cut(s) 82
EcoT38I GRGCYC 1 cut(s) 772
ErhI CCWWGG 1 cut(s) 763
FaeI CATG 4 cut(s) 184, 226, 244, 767
FaqI GGGAC 1 cut(s) 773
FatI CATG 4 cut(s) 180, 222, 240, 763
FauNDI CATATG 1 cut(s) 607
FbaI TGATCA 1 cut(s) 9
Fnu4HI GCNGC 6 cut(s) 288, 297, 741, 951, 954, 1033
FokI GGATG 4 cut(s) 725, 869, 893, 1010
FriOI GRGCYC 1 cut(s) 772
Fsp4HI GCNGC 6 cut(s) 288, 297, 741, 951, 954, 1033
FspBI CTAG 2 cut(s) 599, 722
GlaI GCGC 2 cut(s) 124, 491
GluI GCNGC 6 cut(s) 288, 297, 741, 951, 954, 1033
GsuI CTGGAG 1 cut(s) 115
HapII CCGG 2 cut(s) 628, 994
HgaI GACGC 1 cut(s) 342
HhaI GCGC 2 cut(s) 125, 492
Hin1II CATG 4 cut(s) 184, 226, 244, 767
Hin6I GCGC 2 cut(s) 123, 490
HinP1I GCGC 2 cut(s) 123, 490
HincII GTYRAC 1 cut(s) 357
HindII GTYRAC 1 cut(s) 357
HinfI GANTC 4 cut(s) 103, 201, 590, 682
HpaII CCGG 2 cut(s) 628, 994
HphI GGTGA 4 cut(s) 4, 248, 661, 1042
Hpy166II GTNNAC 4 cut(s) 102, 357, 394, 472
Hpy188I TCNGA 4 cut(s) 25, 569, 663, 926
Hpy188III TCNNGA 5 cut(s) 223, 508, 594, 757, 973
Hpy8I GTNNAC 4 cut(s) 102, 357, 394, 472
HpyAV CCTTC 3 cut(s) 257, 637, 992
HpyCH4III ACNGT 3 cut(s) 193, 318, 469
HpyCH4IV ACGT 1 cut(s) 648
HpyF3I CTNAG 5 cut(s) 24, 435, 635, 708, 946
HpySE526I ACGT 1 cut(s) 648
Hsp92II CATG 4 cut(s) 184, 226, 244, 767
HspAI GCGC 2 cut(s) 123, 490
Ksp22I TGATCA 1 cut(s) 9
Kzo9I GATC 3 cut(s) 9, 562, 1078
LmnI GCTCC 6 cut(s) 235, 737, 767, 905, 996, 1040
Lsp1109I GCAGC 5 cut(s) 299, 308, 727, 937, 940
LweI GCATC 5 cut(s) 89, 299, 611, 703, 917
MaeI CTAG 2 cut(s) 599, 722
MaeII ACGT 1 cut(s) 648
MaeIII GTNAC 1 cut(s) 1066
MalI GATC 3 cut(s) 11, 564, 1080
MbiI CCGCTC 1 cut(s) 1035
MboI GATC 3 cut(s) 9, 562, 1078
MboII GAAGA 7 cut(s) 46, 259, 356, 556, 824, 841, 939
MhlI GDGCHC 1 cut(s) 772
MluCI AATT 7 cut(s) 50, 306, 532, 621, 750, 840, 1100
MlyI GAGTC 1 cut(s) 97
MmeI TCCRAC 1 cut(s) 406
Mph1103I ATGCAT 1 cut(s) 82
MseI TTAA 2 cut(s) 108, 1022
MslI CAYNNNNRTG 1 cut(s) 308
MspA1I CMGCKG 3 cut(s) 299, 639, 707
MspCI CTTAAG 1 cut(s) 107
MspI CCGG 2 cut(s) 628, 994
MspR9I CCNGG 3 cut(s) 133, 366, 995
Mva1269I GAATGC 1 cut(s) 369
MvaI CCWGG 2 cut(s) 133, 366
MvnI CGCG 2 cut(s) 123, 353
NciI CCSGG 1 cut(s) 995
NcoI CCATGG 1 cut(s) 763
NdeI CATATG 1 cut(s) 607
NdeII GATC 3 cut(s) 9, 562, 1078
NlaIII CATG 4 cut(s) 184, 226, 244, 767
NsiI ATGCAT 1 cut(s) 82
PagI TCATGA 1 cut(s) 222
PctI GAATGC 1 cut(s) 369
PfeI GAWTC 3 cut(s) 201, 590, 682
PflFI GACNNNGTC 1 cut(s) 316
PflMI CCANNNNNTGG 1 cut(s) 485
PfoI TCCNGGA 2 cut(s) 131, 993
PinAI ACCGGT 1 cut(s) 627
PkrI GCNGC 6 cut(s) 289, 298, 742, 952, 955, 1034
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PpuMI RGGWCCY 1 cut(s) 362
PsiI TTATAA 1 cut(s) 1105
Psp124BI GAGCTC 1 cut(s) 772
Psp5II RGGWCCY 1 cut(s) 362
Psp6I CCWGG 2 cut(s) 131, 364
PspGI CCWGG 2 cut(s) 131, 364
PspPI GGNCC 2 cut(s) 94, 362
PspPPI RGGWCCY 1 cut(s) 362
PstI CTGCAG 3 cut(s) 298, 745, 958
PstNI CAGNNNCTG 2 cut(s) 293, 365
PsyI GACNNNGTC 1 cut(s) 316
PvuII CAGCTG 3 cut(s) 299, 639, 707
RsaI GTAC 2 cut(s) 395, 729
RsaNI GTAC 2 cut(s) 394, 728
RseI CAYNNNNRTG 1 cut(s) 308
SacI GAGCTC 1 cut(s) 772
SaqAI TTAA 2 cut(s) 108, 1022
SatI GCNGC 6 cut(s) 288, 297, 741, 951, 954, 1033
Sau3AI GATC 3 cut(s) 9, 562, 1078
Sau96I GGNCC 2 cut(s) 94, 362
SchI GAGTC 1 cut(s) 97
ScrFI CCNGG 3 cut(s) 133, 366, 995
SduI GDGCHC 1 cut(s) 772
SfaNI GCATC 5 cut(s) 89, 299, 611, 703, 917
SfcI CTRYAG 4 cut(s) 234, 294, 741, 954
SinI GGWCC 2 cut(s) 94, 362
SmiMI CAYNNNNRTG 1 cut(s) 308
SmlI CTYRAG 2 cut(s) 107, 1040
SmoI CTYRAG 2 cut(s) 107, 1040
Sse9I AATT 7 cut(s) 50, 306, 532, 621, 750, 840, 1100
SsiI CCGC 2 cut(s) 1026, 1033
SspI AATATT 2 cut(s) 208, 559
SspMI CTAG 2 cut(s) 599, 722
SstI GAGCTC 1 cut(s) 772
StyD4I CCNGG 3 cut(s) 131, 364, 993
StyI CCWWGG 1 cut(s) 763
TaaI ACNGT 3 cut(s) 193, 318, 469
TaiI ACGT 1 cut(s) 651
TaqI TCGA 3 cut(s) 145, 342, 758
TasI AATT 7 cut(s) 50, 306, 532, 621, 750, 840, 1100
TatI WGTACW 2 cut(s) 393, 727
TauI GCSGC 1 cut(s) 1035
TfiI GAWTC 3 cut(s) 201, 590, 682
Tru1I TTAA 2 cut(s) 108, 1022
Tru9I TTAA 2 cut(s) 108, 1022
TscAI CASTG 4 cut(s) 104, 321, 343, 474
TseI GCWGC 5 cut(s) 287, 296, 740, 950, 953
TspGWI ACGGA 2 cut(s) 893, 1085
TspRI CASTG 4 cut(s) 104, 321, 343, 474
Tth111I GACNNNGTC 1 cut(s) 316
Van91I CCANNNNNTGG 1 cut(s) 485
Vha464I CTTAAG 1 cut(s) 107
VpaK11BI GGWCC 2 cut(s) 94, 362
XapI RAATTY 1 cut(s) 532
XcmI CCANNNNNNNNNTGG 1 cut(s) 247
XspI CTAG 2 cut(s) 599, 722
Zsp2I ATGCAT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.