Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002723

Physical Location & Seq

Genomic Coordinates Forward (+)

15681748 .. 15683222

Gene Structure 1475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0114800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGCTGAGCCCGATGACTGGATGCCTCGATTGGAAAATGGAGGCGAAGAAATTCAAAACTACGTTCACCCTAATTATTTTACCACCAAGGTATACCATGGTGACTATATAGATCACATTGAAGGTAAGTACATTGGAGGAAGCATCAGTTACTATGATAACGTTGACAAAGACAGAATGTCGTTGACTAAAGTGGATGGCATGGTGAAGGGCATCAACCCTAAATACGCTGGGACAAGGATAGATTACTGGTATTCCATTGGCAGTGAGGAGGATGGAAAGACAAAGCTGAGATGTGATAGTGATGTGATCAGAATGTGTTGCCTGGTGCCTGAAATAAGGCTGGTGATACTTTACCTTGACCATTTGGAGCTGGACCCTGCTTATGAAGAATCTCTGGATGATTTGTTTATGTATGAAGACCAAATGCCTGGTTGGAGTCAAGCTGCATCAAGCAATGTTGTCATAGAAGAGCTACCCGATTCACCAAGAAAGCCAAGAACAAGTGTCAAGATTGAGGAGCTGCCTGATTCTCCTAAGAAGTGGCCTCAGGTGCCAAACCAAGTGAAGGGAAAAAGGTATAAGATGCAGGCAATTAGGAAGGCTTTGCCTGGTGTGAAGATTATTGAGCATCAAGAGGATGTGCCAACTCAAGCAAGCAGAGTTCCTGTCATAGATGCTACTGATAAAGGAAAGGGTAAATTGGAGTTTGAGCAAGTTGATGGTGATAGTGATGATGACTATGATGGTGAGGGTTTAGGAGGACAATCTCATGGTGATGGTTTAGGAGGACTTGATGATGGTGAGGGTTTAGGGTATAGAGATGATGGTGAGAATTTAGGAGGACAAGGGGAGAGGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009853 GO:0009987 GO:0010033 GO:0010109 GO:0016020 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0022626 GO:0030054 GO:0031323 GO:0032991 GO:0035821 GO:0042221 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050665 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0055044 GO:0055114 GO:0065007 GO:0072593 GO:0098542 GO:1903409 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

287

Amino Acids

32.23

Weight (kDa)

4.57

Isoelectric Point (pI)

47.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PB1-like	PF26130	26 - 109	4.2e-10	PB1-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18360 AT4G18360 AT4G18360 AT4G18360
fragaria_vesca	FvH4_3g05330 FvH4_3g05330 FvH4_3g05330 FvH4_3g05330
malus_domestica	MD05G1281900.v1.1 MD10G1260600.v1.1
prunus_persica	Prupe.4G082600_v2.0.a1 Prupe.4G082600_v2.0.a1 Prupe.4G082600_v2.0.a1 Prupe.4G082600_v2.0.a1 Prupe.4G082600_v2.0.a1
pyrus_communis	pycom05g26180 pycom10g21660
rosa_chinensis	RchiOBHm_Chr5g0014411 RchiOBHm_Chr6g0278091 RchiOBHm_Chr6g0278121 RchiOBHm_Chr6g0278131
rosa_laevigata	RLG00000013240 RLG00000032106
rosa_multiflora	Rmu_sc0000791.1_g000023 Rmu_sc0000791.1_g000034 Rmu_sc0000791.1_g000050 Rmu_ssc0000422.1_g000039
rosa_roxburghii	Rroxscaffold_1G00062170 Rroxscaffold_7G00190510 Rroxscaffold_7G00190520
rosa_rugosa	Rorug05G0017900 Rorug06G0114800
rosa_samantha	Rh5AG112700 Rh6BG228600 Rh6CG231000
rosa_wichuraiana	Rw5G009780 Rw6G019610 Rw6G019640 Rw6G019650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	328, 553
AccI	GTMKAC	1 cut(s)	93
AclI	AACGTT	1 cut(s)	162
AcsI	RAATTY	2 cut(s)	51, 835
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	2 cut(s)	18, 568
AgsI	TTSAA	2 cut(s)	56, 122
AhdI	GACNNNNNGTC	1 cut(s)	178
AjnI	CCWGG	3 cut(s)	324, 430, 610
AluBI	AGCT	5 cut(s)	289, 373, 446, 475, 523
AluI	AGCT	5 cut(s)	289, 373, 446, 475, 523
AoxI	GGCC	1 cut(s)	545
ApeKI	GCWGC	2 cut(s)	446, 523
ApoI	RAATTY	2 cut(s)	51, 835
Asp700I	GAANNNNTTC	1 cut(s)	51
AspS9I	GGNCC	1 cut(s)	376
AvaII	GGWCC	1 cut(s)	376
AxyI	CCTNAGG	1 cut(s)	549
BanI	GGYRCC	2 cut(s)	328, 553
BanII	GRGCYC	1 cut(s)	12
BbsI	GAAGAC	1 cut(s)	426
BbvI	GCAGC	2 cut(s)	433, 510
BccI	CCATC	7 cut(s)	191, 269, 716, 740, 773, 794, 821
BciT130I	CCWGG	3 cut(s)	326, 432, 612
BclI	TGATCA	1 cut(s)	309
BisI	GCNGC	2 cut(s)	447, 524
BlpI	GCTNAGC	1 cut(s)	6
BlsI	GCNGC	2 cut(s)	448, 525
Bme1390I	CCNGG	3 cut(s)	326, 432, 612
Bme18I	GGWCC	1 cut(s)	376
BmeRI	GACNNNNNGTC	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	376
BmiI	GGNNCC	3 cut(s)	330, 378, 555
BmrFI	CCNGG	3 cut(s)	326, 432, 612
BmsI	GCATC	7 cut(s)	12, 153, 222, 458, 576, 640, 667
BpiI	GAAGAC	1 cut(s)	426
Bpu1102I	GCTNAGC	1 cut(s)	6
BpuEI	CTTGAG	1 cut(s)	636
BsaJI	CCNNGG	2 cut(s)	87, 97
BsaXI	ACNNNNNCTCC	1 cut(s)	845
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 568
Bse1I	ACTGG	2 cut(s)	23, 254
Bse21I	CCTNAGG	1 cut(s)	549
Bse3DI	GCAATG	1 cut(s)	463
BseBI	CCWGG	3 cut(s)	326, 432, 612
BseDI	CCNNGG	2 cut(s)	87, 97
BseGI	GGATG	6 cut(s)	27, 202, 280, 406, 646, 864
BseLI	CCNNNNNNNGG	2 cut(s)	18, 568
BseMI	GCAATG	1 cut(s)	463
BseMII	CTCAG	2 cut(s)	281, 563
BseNI	ACTGG	2 cut(s)	23, 254
BseRI	GAGGAG	2 cut(s)	284, 533
BseXI	GCAGC	2 cut(s)	433, 510
BseYI	CCCAGC	1 cut(s)	230
BshFI	GGCC	1 cut(s)	547
BshNI	GGYRCC	2 cut(s)	328, 553
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	2 cut(s)	18, 568
BsmFI	GGGAC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	547
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp143I	GATC	2 cut(s)	112, 309
Bsp1720I	GCTNAGC	1 cut(s)	6
Bsp19I	CCATGG	1 cut(s)	97
BspANI	GGCC	1 cut(s)	547
BspCNI	CTCAG	2 cut(s)	282, 562
BspLI	GGNNCC	3 cut(s)	330, 378, 555
BspQI	GCTCTTC	1 cut(s)	465
BspT107I	GGYRCC	2 cut(s)	328, 553
BsrDI	GCAATG	1 cut(s)	463
BsrI	ACTGG	2 cut(s)	23, 254
BssECI	CCNNGG	2 cut(s)	87, 97
BssMI	GATC	2 cut(s)	112, 309
BssNAI	GTATAC	1 cut(s)	94
BssT1I	CCWWGG	2 cut(s)	87, 97
Bst1107I	GTATAC	1 cut(s)	94
Bst2UI	CCWGG	3 cut(s)	326, 432, 612
Bst6I	CTCTTC	1 cut(s)	465
BstC8I	GCNNGC	2 cut(s)	591, 658
BstDEI	CTNAG	4 cut(s)	6, 290, 537, 549
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	6 cut(s)	27, 202, 280, 406, 646, 864
BstKTI	GATC	2 cut(s)	115, 312
BstMBI	GATC	2 cut(s)	112, 309
BstMWI	GCNNNNNNNGC	1 cut(s)	553
BstNI	CCWGG	3 cut(s)	326, 432, 612
BstSCI	CCNGG	3 cut(s)	324, 430, 610
BstV1I	GCAGC	2 cut(s)	433, 510
BstV2I	GAAGAC	1 cut(s)	426
BstXI	CCANNNNNNTGG	1 cut(s)	431
BstZ17I	GTATAC	1 cut(s)	94
Bsu36I	CCTNAGG	1 cut(s)	549
BsuRI	GGCC	1 cut(s)	547
BtgI	CCRYGG	1 cut(s)	97
BtsCI	GGATG	6 cut(s)	27, 202, 280, 406, 646, 864
BtsI	GCAGTG	1 cut(s)	271
BtsIMutI	CAGTG	1 cut(s)	271
Cac8I	GCNNGC	2 cut(s)	591, 658
Cfr13I	GGNCC	1 cut(s)	376
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	3 cut(s)	98, 202, 773
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	4 cut(s)	6, 290, 537, 549
DpnI	GATC	2 cut(s)	114, 311
DpnII	GATC	2 cut(s)	112, 309
DriI	GACNNNNNGTC	1 cut(s)	178
Eam1104I	CTCTTC	1 cut(s)	465
Eam1105I	GACNNNNNGTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	465
Eco130I	CCWWGG	2 cut(s)	87, 97
Eco24I	GRGCYC	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	376
Eco81I	CCTNAGG	1 cut(s)	549
EcoRII	CCWGG	3 cut(s)	324, 430, 610
EcoT14I	CCWWGG	2 cut(s)	87, 97
EcoT38I	GRGCYC	1 cut(s)	12
ErhI	CCWWGG	2 cut(s)	87, 97
FaeI	CATG	3 cut(s)	101, 205, 776
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	3 cut(s)	97, 201, 772
FbaI	TGATCA	1 cut(s)	309
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	2 cut(s)	447, 524
FokI	GGATG	5 cut(s)	34, 209, 287, 413, 653
FriOI	GRGCYC	1 cut(s)	12
Fsp4HI	GCNGC	2 cut(s)	447, 524
GluI	GCNGC	2 cut(s)	447, 524
GsaI	CCCAGC	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	547
Hin1II	CATG	3 cut(s)	101, 205, 776
HincII	GTYRAC	2 cut(s)	166, 186
HindII	GTYRAC	2 cut(s)	166, 186
HinfI	GANTC	4 cut(s)	392, 439, 482, 530
Hpy166II	GTNNAC	4 cut(s)	67, 94, 166, 186
Hpy188I	TCNGA	1 cut(s)	314
Hpy188III	TCNNGA	3 cut(s)	398, 511, 635
Hpy8I	GTNNAC	4 cut(s)	67, 94, 166, 186
HpyAV	CCTTC	4 cut(s)	116, 202, 562, 595
HpyCH4IV	ACGT	2 cut(s)	63, 162
HpyCH4V	TGCA	2 cut(s)	449, 589
HpyF10VI	GCNNNNNNNGC	1 cut(s)	553
HpyF3I	CTNAG	4 cut(s)	6, 290, 537, 549
HpySE526I	ACGT	2 cut(s)	63, 162
Hsp92II	CATG	3 cut(s)	101, 205, 776
Ksp22I	TGATCA	1 cut(s)	309
Kzo9I	GATC	2 cut(s)	112, 309
LguI	GCTCTTC	1 cut(s)	465
LmnI	GCTCC	2 cut(s)	370, 520
Lsp1109I	GCAGC	2 cut(s)	433, 510
LweI	GCATC	7 cut(s)	12, 153, 222, 458, 576, 640, 667
MaeII	ACGT	2 cut(s)	63, 162
MaeIII	GTNAC	2 cut(s)	101, 149
MalI	GATC	2 cut(s)	114, 311
MboI	GATC	2 cut(s)	112, 309
MboII	GAAGA	5 cut(s)	59, 401, 431, 482, 631
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	5 cut(s)	51, 73, 594, 701, 835
MlyI	GAGTC	1 cut(s)	448
MmeI	TCCRAC	1 cut(s)	416
MroXI	GAANNNNTTC	1 cut(s)	51
MslI	CAYNNNNRTG	1 cut(s)	777
MspR9I	CCNGG	3 cut(s)	326, 432, 612
MvaI	CCWGG	3 cut(s)	326, 432, 612
MwoI	GCNNNNNNNGC	1 cut(s)	553
NcoI	CCATGG	1 cut(s)	97
NdeII	GATC	2 cut(s)	112, 309
NlaIII	CATG	3 cut(s)	101, 205, 776
NlaIV	GGNNCC	3 cut(s)	330, 378, 555
NmuCI	GTSAC	1 cut(s)	101
PciSI	GCTCTTC	1 cut(s)	465
PdmI	GAANNNNTTC	1 cut(s)	51
PfeI	GAWTC	3 cut(s)	392, 482, 530
PkrI	GCNGC	2 cut(s)	448, 525
PleI	GAGTC	1 cut(s)	447
PpsI	GAGTC	1 cut(s)	447
Psp1406I	AACGTT	1 cut(s)	162
Psp6I	CCWGG	3 cut(s)	324, 430, 610
PspFI	CCCAGC	1 cut(s)	230
PspGI	CCWGG	3 cut(s)	324, 430, 610
PspN4I	GGNNCC	3 cut(s)	330, 378, 555
PspPI	GGNCC	1 cut(s)	376
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
RseI	CAYNNNNRTG	1 cut(s)	777
SapI	GCTCTTC	1 cut(s)	465
SatI	GCNGC	2 cut(s)	447, 524
Sau3AI	GATC	2 cut(s)	112, 309
Sau96I	GGNCC	1 cut(s)	376
SchI	GAGTC	1 cut(s)	448
ScrFI	CCNGG	3 cut(s)	326, 432, 612
SduI	GDGCHC	1 cut(s)	12
SfaNI	GCATC	7 cut(s)	12, 153, 222, 458, 576, 640, 667
SinI	GGWCC	1 cut(s)	376
SmiMI	CAYNNNNRTG	1 cut(s)	777
SmlI	CTYRAG	1 cut(s)	651
SmoI	CTYRAG	1 cut(s)	651
Sse9I	AATT	5 cut(s)	51, 73, 594, 701, 835
StyD4I	CCNGG	3 cut(s)	324, 430, 610
StyI	CCWWGG	2 cut(s)	87, 97
TaiI	ACGT	2 cut(s)	66, 165
TaqI	TCGA	1 cut(s)	28
TasI	AATT	5 cut(s)	51, 73, 594, 701, 835
TatI	WGTACW	1 cut(s)	129
TfiI	GAWTC	3 cut(s)	392, 482, 530
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	2 cut(s)	446, 523
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	2 cut(s)	402, 432
TspRI	CASTG	1 cut(s)	271
VpaK11BI	GGWCC	1 cut(s)	376
XapI	RAATTY	2 cut(s)	51, 835
XmiI	GTMKAC	1 cut(s)	93
XmnI	GAANNNNTTC	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.