FvH4_3g05330

Peroxisomal (S)-2-hydroxy-acid oxidase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
3108392 .. 3111900
3509 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g05330.t2

Sequence Viewer

Length: 1107 bp
ATGGAGATGATAACCAATGTTTCTGAGTTCCAGAAGATTGCAAAGGAGAAATTGCCAAAGATGGTGTATGACTACTATGCATCTGGTGCAGAGGACCAGTGGACTCTCAAGGAGAACGAACGTGCTTTCTCGAGGATTTTGTTTAGACCCCGTATTCTTATTGATGTAAGCAAGATAGACTTGAGAACAACAGTTCTGGGATTCAATATTTCAATGCCCATCATGATAGCTCCTACAGCCATGCAGAAGATGGCTCACCCTGAAGGAGAGTTTGCAACAGCAAGAGCGGCATCTGCAGCTGACACTATTATGACACTGTCCTCCTGGGCTACTTCCAGTGTTGAAGAGGTTGCATCAACAGGACCTGGCATTCGTTTTTTCCAACTCTATGTGTACAAAGACAGGAACGTGGTTGCACAGCTTGTCAAAAAAGCTGAGAAAGCTGGTTTCAAGGCAATAGCCCTTACTGTGGACACTCCACGGCTTGGACGCAGGGAGGCTGATATCAAGAACAGATTTACTTTGCCACCAAATTTGTCATTGAAGAACTTTGAGGACATTGATCTAGGGAAGATGGATAAGACCAATGATTCTGGACTAGCATCATATGTTGCTGGACAAGTTGACCAGTCTCTCAGCTGGAAGGACGTGAAATGGCTTCAGACAATCACCCATTTACCGATTCTTGTAAAGGGTGTGATCACAGCTGAGGATGCACAACTAGCTGTACAACATGGCGCTGCAGGAATAATTGTCTCGAACCATGGAGCTCGCCAGCTTGATTATGTCCCTGCAACTATTATGGCTTTGGAAGAGGTCGTCAAAGCTACACGAGGGATAATTCCGGTCTTCTTGGATGGTGGAGTAAGACGAGGAACAGATGTTTTCAAAGCTTTGGCTCTTGGAGCATCGGGTGTATTTATTGGAAGGCCAGTACTGTTCTCATTAGCTGCTGCAGGGGAGACTGGTGTCAGGAAAGTCCTTCAAATGCTGCGAGACGAGTTTGAACTGACTATGGCACTGAGCGGTTGCCGCTCCCTCAAGGAAATCACCCGAGACCATATTGTAACGGAATGGGATCGTCCCCGTATTGCACCCAGATTATAA

Protein Analysis

369

Amino Acids

40.64

Weight (kDa)

9.11

Isoelectric Point (pI)

29.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMN_dh PF01070 14 - 356 1.7e-139 FMN-dependent dehydrogenase
NMO PF03060 230 - 344 6.8e-06 Nitronate monooxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1105
AccB7I CCANNNNNTGG 1 cut(s) 485
AccBSI CCGCTC 3 cut(s) 287, 1026, 1035
AciI CCGC 3 cut(s) 287, 1026, 1033
AclWI GGATC 1 cut(s) 1086
AcsI RAATTY 1 cut(s) 532
AcuI CTGAAG 2 cut(s) 282, 644
AfaI GTAC 3 cut(s) 395, 729, 936
AfiI CCNNNNNNNGG 2 cut(s) 469, 485
AgsI TTSAA 8 cut(s) 205, 213, 344, 451, 544, 889, 986, 1007
AjiI CACGTC 1 cut(s) 649
AjnI CCWGG 2 cut(s) 323, 364
Alw21I GWGCWC 1 cut(s) 772
Alw26I GTCTC 5 cut(s) 636, 760, 956, 990, 1050
AlwI GGATC 1 cut(s) 1086
AlwNI CAGNNNCTG 1 cut(s) 365
Ama87I CYCGRG 2 cut(s) 130, 1053
AoxI GGCC 1 cut(s) 929
ApeKI GCWGC 5 cut(s) 296, 740, 950, 953, 991
ApoI RAATTY 1 cut(s) 532
ArsI GACNNNNNNTTYG 2 cut(s) 354, 386
AspLEI GCGC 1 cut(s) 740
AspS9I GGNCC 2 cut(s) 94, 362
AsuHPI GGTGA 3 cut(s) 248, 661, 1042
AvaI CYCGRG 2 cut(s) 130, 1053
AvaII GGWCC 2 cut(s) 94, 362
BanII GRGCYC 1 cut(s) 772
BauI CACGAG 1 cut(s) 831
BbsI GAAGAC 1 cut(s) 841
Bbv12I GWGCWC 1 cut(s) 772
BbvCI CCTCAGC 1 cut(s) 708
BbvI GCAGC 5 cut(s) 308, 727, 937, 940, 978
BccI CCATC 5 cut(s) 55, 227, 244, 568, 851
BceAI ACGGC 1 cut(s) 497
BciT130I CCWGG 2 cut(s) 325, 366
BclI TGATCA 1 cut(s) 699
BcoDI GTCTC 5 cut(s) 636, 760, 956, 990, 1050
BfaI CTAG 3 cut(s) 566, 599, 722
BfmI CTRYAG 4 cut(s) 234, 294, 741, 954
BfoI RGCGCY 1 cut(s) 741
BisI GCNGC 7 cut(s) 288, 297, 741, 951, 954, 992, 1033
BlsI GCNGC 7 cut(s) 289, 298, 742, 952, 955, 993, 1034
BmcAI AGTACT 1 cut(s) 936
Bme1390I CCNGG 2 cut(s) 325, 366
Bme18I GGWCC 2 cut(s) 94, 362
BmeT110I CYCGRG 2 cut(s) 130, 1053
BmgBI CACGTC 1 cut(s) 649
BmgT120I GGNCC 2 cut(s) 94, 362
BmrFI CCNGG 2 cut(s) 325, 366
BmsI GCATC 6 cut(s) 89, 299, 362, 611, 703, 917
BoxI GACNNNNGTC 1 cut(s) 968
BpiI GAAGAC 1 cut(s) 841
Bpu10I CCTNAGC 1 cut(s) 708
BpuEI CTTGAG 3 cut(s) 92, 202, 1025
BsaI GGTCTC 1 cut(s) 1050
BsaJI CCNNGG 3 cut(s) 324, 479, 763
BsaWI WCCGGW 1 cut(s) 844
Bsc4I CCNNNNNNNGG 2 cut(s) 469, 485
Bse1I ACTGG 5 cut(s) 97, 336, 628, 932, 970
BseBI CCWGG 2 cut(s) 325, 366
BseDI CCNNGG 3 cut(s) 324, 479, 763
BseGI GGATG 2 cut(s) 718, 862
BseLI CCNNNNNNNGG 2 cut(s) 469, 485
BseMII CTCAG 5 cut(s) 15, 426, 649, 699, 1013
BseNI ACTGG 5 cut(s) 97, 336, 628, 932, 970
BseXI GCAGC 5 cut(s) 308, 727, 937, 940, 978
BsgI GTGCAG 1 cut(s) 108
BshFI GGCC 1 cut(s) 931
BsiHKAI GWGCWC 1 cut(s) 772
BsiHKCI CYCGRG 2 cut(s) 130, 1053
BsiSI CCGG 1 cut(s) 845
BslFI GGGAC 2 cut(s) 773, 1068
BslI CCNNNNNNNGG 2 cut(s) 469, 485
BsmAI GTCTC 5 cut(s) 636, 760, 956, 990, 1050
BsmBI CGTCTC 1 cut(s) 990
BsmFI GGGAC 2 cut(s) 773, 1068
BsmI GAATGC 1 cut(s) 369
BsnI GGCC 1 cut(s) 931
Bso31I GGTCTC 1 cut(s) 1050
BsoBI CYCGRG 2 cut(s) 130, 1053
Bsp1286I GDGCHC 1 cut(s) 772
Bsp1407I TGTACA 2 cut(s) 393, 727
Bsp143I GATC 3 cut(s) 562, 699, 1078
Bsp19I CCATGG 1 cut(s) 763
BspACI CCGC 3 cut(s) 287, 1026, 1033
BspANI GGCC 1 cut(s) 931
BspCNI CTCAG 5 cut(s) 16, 427, 648, 700, 1014
BspHI TCATGA 1 cut(s) 222
BspMAI CTGCAG 3 cut(s) 298, 745, 958
BspPI GGATC 1 cut(s) 1086
BspTNI GGTCTC 1 cut(s) 1050
BsrBI CCGCTC 3 cut(s) 287, 1026, 1035
BsrGI TGTACA 2 cut(s) 393, 727
BsrI ACTGG 5 cut(s) 97, 336, 628, 932, 970
BssECI CCNNGG 3 cut(s) 324, 479, 763
BssMI GATC 3 cut(s) 562, 699, 1078
BssSI CACGAG 1 cut(s) 831
BssT1I CCWWGG 1 cut(s) 763
Bst2BI CACGAG 1 cut(s) 831
Bst2UI CCWGG 2 cut(s) 325, 366
Bst4CI ACNGT 4 cut(s) 193, 318, 469, 939
Bst6I CTCTTC 2 cut(s) 339, 807
BstAPI GCANNNNNTGC 1 cut(s) 86
BstAUI TGTACA 2 cut(s) 393, 727
BstC8I GCNNGC 2 cut(s) 772, 776
BstDEI CTNAG 5 cut(s) 24, 435, 635, 708, 1022
BstDSI CCRYGG 2 cut(s) 479, 763
BstF5I GGATG 2 cut(s) 718, 862
BstH2I RGCGCY 1 cut(s) 741
BstHHI GCGC 1 cut(s) 740
BstKTI GATC 3 cut(s) 565, 702, 1081
BstMAI GTCTC 5 cut(s) 636, 760, 956, 990, 1050
BstMBI GATC 3 cut(s) 562, 699, 1078
BstNI CCWGG 2 cut(s) 325, 366
BstPAI GACNNNNGTC 1 cut(s) 968
BstSCI CCNGG 2 cut(s) 323, 364
BstSFI CTRYAG 4 cut(s) 234, 294, 741, 954
BstV1I GCAGC 5 cut(s) 308, 727, 937, 940, 978
BstV2I GAAGAC 1 cut(s) 841
BsuRI GGCC 1 cut(s) 931
BtgI CCRYGG 2 cut(s) 479, 763
BtrI CACGTC 1 cut(s) 649
BtsCI GGATG 2 cut(s) 718, 862
BtsIMutI CAGTG 4 cut(s) 104, 314, 343, 1019
Cac8I GCNNGC 2 cut(s) 772, 776
CaiI CAGNNNCTG 1 cut(s) 365
CciI TCATGA 1 cut(s) 222
CfoI GCGC 1 cut(s) 740
Cfr13I GGNCC 2 cut(s) 94, 362
CseI GACGC 1 cut(s) 498
Csp6I GTAC 3 cut(s) 394, 728, 935
CspCI CAANNNNNGTGG 2 cut(s) 516, 551
CviAII CATG 4 cut(s) 223, 241, 734, 764
CviQI GTAC 3 cut(s) 394, 728, 935
DdeI CTNAG 5 cut(s) 24, 435, 635, 708, 1022
DpnI GATC 3 cut(s) 564, 701, 1080
DpnII GATC 3 cut(s) 562, 699, 1078
Eam1104I CTCTTC 2 cut(s) 339, 807
EarI CTCTTC 2 cut(s) 339, 807
Ecl136II GAGCTC 1 cut(s) 770
Eco130I CCWWGG 1 cut(s) 763
Eco24I GRGCYC 1 cut(s) 772
Eco31I GGTCTC 1 cut(s) 1050
Eco32I GATATC 1 cut(s) 505
Eco47I GGWCC 2 cut(s) 94, 362
Eco53kI GAGCTC 1 cut(s) 770
Eco57I CTGAAG 2 cut(s) 282, 644
Eco88I CYCGRG 2 cut(s) 130, 1053
EcoICRI GAGCTC 1 cut(s) 770
EcoO109I RGGNCCY 1 cut(s) 362
EcoRII CCWGG 2 cut(s) 323, 364
EcoRV GATATC 1 cut(s) 505
EcoT14I CCWWGG 1 cut(s) 763
EcoT22I ATGCAT 1 cut(s) 82
EcoT38I GRGCYC 1 cut(s) 772
ErhI CCWWGG 1 cut(s) 763
Esp3I CGTCTC 1 cut(s) 990
FaeI CATG 4 cut(s) 226, 244, 737, 767
FalI AAGNNNNNCTT 2 cut(s) 164, 196
FaqI GGGAC 2 cut(s) 773, 1068
FatI CATG 4 cut(s) 222, 240, 733, 763
FauNDI CATATG 1 cut(s) 607
FbaI TGATCA 1 cut(s) 699
Fnu4HI GCNGC 7 cut(s) 288, 297, 741, 951, 954, 992, 1033
FokI GGATG 2 cut(s) 725, 869
FriOI GRGCYC 1 cut(s) 772
Fsp4HI GCNGC 7 cut(s) 288, 297, 741, 951, 954, 992, 1033
FspBI CTAG 3 cut(s) 566, 599, 722
GlaI GCGC 1 cut(s) 739
GluI GCNGC 7 cut(s) 288, 297, 741, 951, 954, 992, 1033
HaeII RGCGCY 1 cut(s) 741
HaeIII GGCC 1 cut(s) 931
HapII CCGG 1 cut(s) 845
HgaI GACGC 1 cut(s) 498
HhaI GCGC 1 cut(s) 740
Hin1II CATG 4 cut(s) 226, 244, 737, 767
Hin6I GCGC 1 cut(s) 738
HinP1I GCGC 1 cut(s) 738
HincII GTYRAC 1 cut(s) 625
HindII GTYRAC 1 cut(s) 625
HindIII AAGCTT 1 cut(s) 891
HinfI GANTC 4 cut(s) 103, 201, 590, 682
HpaII CCGG 1 cut(s) 845
HphI GGTGA 3 cut(s) 248, 661, 1042
Hpy166II GTNNAC 4 cut(s) 102, 394, 472, 625
Hpy188I TCNGA 2 cut(s) 25, 663
Hpy188III TCNNGA 7 cut(s) 31, 130, 223, 508, 594, 757, 973
Hpy8I GTNNAC 4 cut(s) 102, 394, 472, 625
HpyAV CCTTC 4 cut(s) 257, 637, 921, 992
HpyCH4III ACNGT 4 cut(s) 193, 318, 469, 939
HpyCH4IV ACGT 3 cut(s) 121, 408, 648
HpyF3I CTNAG 5 cut(s) 24, 435, 635, 708, 1022
HpySE526I ACGT 3 cut(s) 121, 408, 648
Hsp92II CATG 4 cut(s) 226, 244, 737, 767
HspAI GCGC 1 cut(s) 738
Ksp22I TGATCA 1 cut(s) 699
Kzo9I GATC 3 cut(s) 562, 699, 1078
LmnI GCTCC 4 cut(s) 235, 767, 905, 1040
Lsp1109I GCAGC 5 cut(s) 308, 727, 937, 940, 978
LweI GCATC 6 cut(s) 89, 299, 362, 611, 703, 917
MaeI CTAG 3 cut(s) 566, 599, 722
MaeII ACGT 3 cut(s) 121, 408, 648
MaeIII GTNAC 1 cut(s) 1066
MalI GATC 3 cut(s) 564, 701, 1080
MbiI CCGCTC 3 cut(s) 287, 1026, 1035
MboI GATC 3 cut(s) 562, 699, 1078
MboII GAAGA 7 cut(s) 46, 259, 356, 556, 583, 824, 841
MhlI GDGCHC 1 cut(s) 772
MluCI AATT 4 cut(s) 50, 532, 750, 840
MlyI GAGTC 1 cut(s) 97
MmeI TCCRAC 1 cut(s) 406
Mph1103I ATGCAT 1 cut(s) 82
MslI CAYNNNNRTG 1 cut(s) 308
MspA1I CMGCKG 3 cut(s) 299, 639, 707
MspI CCGG 1 cut(s) 845
MspR9I CCNGG 2 cut(s) 325, 366
Mva1269I GAATGC 1 cut(s) 369
MvaI CCWGG 2 cut(s) 325, 366
NcoI CCATGG 1 cut(s) 763
NdeI CATATG 1 cut(s) 607
NdeII GATC 3 cut(s) 562, 699, 1078
NlaIII CATG 4 cut(s) 226, 244, 737, 767
NsiI ATGCAT 1 cut(s) 82
PaeR7I CTCGAG 1 cut(s) 130
PagI TCATGA 1 cut(s) 222
PctI GAATGC 1 cut(s) 369
PfeI GAWTC 3 cut(s) 201, 590, 682
PflFI GACNNNGTC 1 cut(s) 316
PflMI CCANNNNNTGG 1 cut(s) 485
PkrI GCNGC 7 cut(s) 289, 298, 742, 952, 955, 993, 1034
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PpuMI RGGWCCY 1 cut(s) 362
PshAI GACNNNNGTC 1 cut(s) 968
PsiI TTATAA 1 cut(s) 1105
Psp124BI GAGCTC 1 cut(s) 772
Psp5II RGGWCCY 1 cut(s) 362
Psp6I CCWGG 2 cut(s) 323, 364
PspGI CCWGG 2 cut(s) 323, 364
PspPI GGNCC 2 cut(s) 94, 362
PspPPI RGGWCCY 1 cut(s) 362
PstI CTGCAG 3 cut(s) 298, 745, 958
PstNI CAGNNNCTG 1 cut(s) 365
PsyI GACNNNGTC 1 cut(s) 316
PvuII CAGCTG 3 cut(s) 299, 639, 707
RsaI GTAC 3 cut(s) 395, 729, 936
RsaNI GTAC 3 cut(s) 394, 728, 935
RseI CAYNNNNRTG 1 cut(s) 308
SacI GAGCTC 1 cut(s) 772
SatI GCNGC 7 cut(s) 288, 297, 741, 951, 954, 992, 1033
Sau3AI GATC 3 cut(s) 562, 699, 1078
Sau96I GGNCC 2 cut(s) 94, 362
ScaI AGTACT 1 cut(s) 936
SchI GAGTC 1 cut(s) 97
ScrFI CCNGG 2 cut(s) 325, 366
SduI GDGCHC 1 cut(s) 772
SfaNI GCATC 6 cut(s) 89, 299, 362, 611, 703, 917
SfcI CTRYAG 4 cut(s) 234, 294, 741, 954
Sfr274I CTCGAG 1 cut(s) 130
SinI GGWCC 2 cut(s) 94, 362
SlaI CTCGAG 1 cut(s) 130
SmiMI CAYNNNNRTG 1 cut(s) 308
SmlI CTYRAG 4 cut(s) 107, 130, 181, 1040
SmoI CTYRAG 4 cut(s) 107, 130, 181, 1040
Sse9I AATT 4 cut(s) 50, 532, 750, 840
SsiI CCGC 3 cut(s) 287, 1026, 1033
SspI AATATT 1 cut(s) 208
SspMI CTAG 3 cut(s) 566, 599, 722
SstI GAGCTC 1 cut(s) 772
StyD4I CCNGG 2 cut(s) 323, 364
StyI CCWWGG 1 cut(s) 763
TaaI ACNGT 4 cut(s) 193, 318, 469, 939
TaiI ACGT 3 cut(s) 124, 411, 651
TaqI TCGA 2 cut(s) 131, 758
TasI AATT 4 cut(s) 50, 532, 750, 840
TatI WGTACW 3 cut(s) 393, 727, 934
TauI GCSGC 2 cut(s) 290, 1035
TfiI GAWTC 3 cut(s) 201, 590, 682
TscAI CASTG 4 cut(s) 104, 321, 343, 1026
TseI GCWGC 5 cut(s) 296, 740, 950, 953, 991
TspGWI ACGGA 1 cut(s) 1085
TspRI CASTG 4 cut(s) 104, 321, 343, 1026
Tth111I GACNNNGTC 1 cut(s) 316
Van91I CCANNNNNTGG 1 cut(s) 485
VpaK11BI GGWCC 2 cut(s) 94, 362
XapI RAATTY 1 cut(s) 532
XcmI CCANNNNNNNNNTGG 1 cut(s) 247
XhoI CTCGAG 1 cut(s) 130
XspI CTAG 3 cut(s) 566, 599, 722
ZrmI AGTACT 1 cut(s) 936
Zsp2I ATGCAT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.