Prupe.4G082600_v2.0.a1

Peroxisomal (S)-2-hydroxy-acid oxidase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
4032356 .. 4036222
3867 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G082600.2

Sequence Viewer

Length: 1104 bp
ATGGAGATAACCAATGTTTCTGAGTATGAGGCAATTGCAAAGCAGAAATTGCCAAAGATGGTCTATGACTACTATGCATCTGGTGCAGAGGATCAGTGGACTCTCAAGGAGAACCAACATGCATTTTCCAGGATTTTGTTCCGGCCTCGTGTTCTTATAGATGTAAGTAAGATAGACTTGAGAACAACTGTGTTGGGTTTCAATATTTCAATGCCCATCATGATTGCTCCTACCGCCATGCAGAAGATGGCTCATCCTGAAGGAGAGTATGCAACGGCAAGAGCAGCAGCCGCGGCTGACACAATTATGACACTGTCTTCTTGGGCTACTTCCAGTGTCAAAGAGGTTGCATCAACAGGACCTGGCATTCGCTTTTTCCAACTCTATGTGTACAAAGACAGGAATGTGGTCACACAGCTTGTCAGAAGAGCTGAGAGGGCTGGTTTCAAGGCCATAGTTCTTACTGTGGACACTCCAAGGCTTGGGCGCAGGGAGGCTGATATCAAGAACAGATTTGTTTTGCCGCCAAATTTGACATTGAAAAACTTTGAGGATTTGGATCTCGGAAAGATGGATAAGACCAATGATTCTGGACTTGCATCATATGTTGCTGGACAAGTCGACCAGTCTCTCAGCTGGAAGGATGTGAAATGGCTTCAGACAATCACCAAATTACCAATTCTTGTAAAGGGTGTAATTACTGCTGAGGATGCACGACTAGCGGTACAATATGGAGCTGCAGGAATTGTCGTCTCCAATCATGGAGCTCGCCAGCTTGATTATGTCCCTGCAACTATTATGGCTTTGGAAGAGGTCGTCAAAGCTGCACAAGGCCGAATTCCTGTGTTTTTGGATGGTGGAGTGAGGAGAGGAACTGATGTTTTCAAGGCTCTGGCTCTTGGAGCATCTGGTGTATTTATTGGTAGACCAGTGGTGTTCTCGTTAGCTGCTGATGGTGAGGCTGGTGTAAGGAAAGTACTTCAAATGCTTCGTGATGAGTTTGAGCTAACAATGGCGTTAAGTGGATGTCGTTCGCTGAAGGAGATCACCCGCGACCACGTTGTGACTGAATGGGATCGTCCTCGGATTGCTCCCAGATTATAA

Protein Analysis

368

Amino Acids

40.59

Weight (kDa)

9.31

Isoelectric Point (pI)

29.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1102
AccB7I CCANNNNNTGG 1 cut(s) 482
AccI GTMKAC 2 cut(s) 621, 925
AccII CGCG 2 cut(s) 293, 1053
AciI CCGC 6 cut(s) 234, 291, 293, 524, 722, 1051
AclWI GGATC 3 cut(s) 99, 567, 1083
AcsI RAATTY 2 cut(s) 529, 837
AcuI CTGAAG 3 cut(s) 279, 641, 1058
AdeI CACNNNGTG 1 cut(s) 1063
AfaI GTAC 3 cut(s) 392, 726, 978
AfiI CCNNNNNNNGG 1 cut(s) 482
AgsI TTSAA 6 cut(s) 202, 210, 448, 541, 886, 983
AjnI CCWGG 2 cut(s) 128, 361
AluBI AGCT 9 cut(s) 418, 431, 636, 737, 767, 775, 824, 947, 1006
AluI AGCT 9 cut(s) 418, 431, 636, 737, 767, 775, 824, 947, 1006
Alw21I GWGCWC 1 cut(s) 769
Alw26I GTCTC 2 cut(s) 633, 757
AlwI GGATC 3 cut(s) 99, 567, 1083
AlwNI CAGNNNCTG 1 cut(s) 362
AoxI GGCC 3 cut(s) 143, 450, 832
ApeKI GCWGC 5 cut(s) 284, 287, 737, 824, 947
ApoI RAATTY 2 cut(s) 529, 837
ArsI GACNNNNNNTTYG 2 cut(s) 351, 383
AspLEI GCGC 1 cut(s) 489
AspS9I GGNCC 1 cut(s) 359
AsuHPI GGTGA 3 cut(s) 658, 968, 1039
AvaII GGWCC 1 cut(s) 359
BanII GRGCYC 1 cut(s) 769
BauI CACGAG 1 cut(s) 147
BbsI GAAGAC 1 cut(s) 309
Bbv12I GWGCWC 1 cut(s) 769
BbvCI CCTCAGC 1 cut(s) 705
BbvI GCAGC 5 cut(s) 296, 299, 724, 811, 934
BccI CCATC 6 cut(s) 52, 224, 241, 565, 848, 947
BceAI ACGGC 1 cut(s) 291
BciT130I CCWGG 2 cut(s) 130, 363
BcoDI GTCTC 2 cut(s) 633, 757
BfaI CTAG 1 cut(s) 719
BfmI CTRYAG 1 cut(s) 738
BisI GCNGC 8 cut(s) 285, 288, 291, 294, 524, 738, 825, 948
BlsI GCNGC 8 cut(s) 286, 289, 292, 295, 525, 739, 826, 949
BmcAI AGTACT 1 cut(s) 978
Bme1390I CCNGG 2 cut(s) 130, 363
Bme18I GGWCC 1 cut(s) 359
BmgT120I GGNCC 1 cut(s) 359
BmrFI CCNGG 2 cut(s) 130, 363
BmsI GCATC 5 cut(s) 86, 359, 608, 700, 914
BpiI GAAGAC 1 cut(s) 309
Bpu10I CCTNAGC 1 cut(s) 705
BpuEI CTTGAG 2 cut(s) 89, 199
BsaBI GATNNNNATC 1 cut(s) 558
BsaJI CCNNGG 3 cut(s) 291, 476, 1082
Bsc4I CCNNNNNNNGG 1 cut(s) 482
Bse1I ACTGG 3 cut(s) 333, 625, 929
Bse8I GATNNNNATC 1 cut(s) 558
BseBI CCWGG 2 cut(s) 130, 363
BseDI CCNNGG 3 cut(s) 291, 476, 1082
BseGI GGATG 5 cut(s) 253, 649, 715, 859, 1031
BseJI GATNNNNATC 1 cut(s) 558
BseLI CCNNNNNNNGG 1 cut(s) 482
BseMII CTCAG 4 cut(s) 12, 423, 646, 696
BseNI ACTGG 3 cut(s) 333, 625, 929
BseRI GAGGAG 1 cut(s) 880
BseXI GCAGC 5 cut(s) 296, 299, 724, 811, 934
BsgI GTGCAG 2 cut(s) 105, 810
Bsh1236I CGCG 2 cut(s) 293, 1053
BshFI GGCC 3 cut(s) 145, 452, 834
BsiHKAI GWGCWC 1 cut(s) 769
BsiSI CCGG 1 cut(s) 142
BslFI GGGAC 1 cut(s) 770
BslI CCNNNNNNNGG 1 cut(s) 482
BsmAI GTCTC 2 cut(s) 633, 757
BsmBI CGTCTC 1 cut(s) 757
BsmFI GGGAC 1 cut(s) 770
BsmI GAATGC 1 cut(s) 366
BsnI GGCC 3 cut(s) 145, 452, 834
Bsp1286I GDGCHC 1 cut(s) 769
Bsp1407I TGTACA 1 cut(s) 390
Bsp143I GATC 4 cut(s) 91, 559, 1044, 1075
BspACI CCGC 6 cut(s) 234, 291, 293, 524, 722, 1051
BspANI GGCC 3 cut(s) 145, 452, 834
BspCNI CTCAG 4 cut(s) 13, 424, 645, 697
BspFNI CGCG 2 cut(s) 293, 1053
BspHI TCATGA 1 cut(s) 219
BspMAI CTGCAG 1 cut(s) 742
BspPI GGATC 3 cut(s) 99, 567, 1083
BspQI GCTCTTC 1 cut(s) 421
BsrGI TGTACA 1 cut(s) 390
BsrI ACTGG 3 cut(s) 333, 625, 929
BssECI CCNNGG 3 cut(s) 291, 476, 1082
BssMI GATC 4 cut(s) 91, 559, 1044, 1075
BssSI CACGAG 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 476
Bst2BI CACGAG 1 cut(s) 147
Bst2UI CCWGG 2 cut(s) 130, 363
Bst4CI ACNGT 3 cut(s) 190, 315, 466
Bst6I CTCTTC 2 cut(s) 421, 804
BstAPI GCANNNNNTGC 2 cut(s) 49, 83
BstAUI TGTACA 1 cut(s) 390
BstC8I GCNNGC 2 cut(s) 769, 773
BstDEI CTNAG 4 cut(s) 21, 432, 632, 705
BstDSI CCRYGG 1 cut(s) 291
BstF5I GGATG 5 cut(s) 253, 649, 715, 859, 1031
BstFNI CGCG 2 cut(s) 293, 1053
BstHHI GCGC 1 cut(s) 489
BstKTI GATC 4 cut(s) 94, 562, 1047, 1078
BstMAI GTCTC 2 cut(s) 633, 757
BstMBI GATC 4 cut(s) 91, 559, 1044, 1075
BstNI CCWGG 2 cut(s) 130, 363
BstNSI RCATGY 1 cut(s) 122
BstSCI CCNGG 2 cut(s) 128, 361
BstSFI CTRYAG 1 cut(s) 738
BstUI CGCG 2 cut(s) 293, 1053
BstV1I GCAGC 5 cut(s) 296, 299, 724, 811, 934
BstV2I GAAGAC 1 cut(s) 309
BstX2I RGATCY 1 cut(s) 559
BstYI RGATCY 1 cut(s) 559
BsuRI GGCC 3 cut(s) 145, 452, 834
BtgI CCRYGG 1 cut(s) 291
BtsCI GGATG 5 cut(s) 253, 649, 715, 859, 1031
BtsIMutI CAGTG 4 cut(s) 101, 311, 340, 936
Cac8I GCNNGC 2 cut(s) 769, 773
CaiI CAGNNNCTG 1 cut(s) 362
CciI TCATGA 1 cut(s) 219
CfoI GCGC 1 cut(s) 489
Cfr13I GGNCC 1 cut(s) 359
Cfr42I CCGCGG 1 cut(s) 294
Csp6I GTAC 3 cut(s) 391, 725, 977
CviAII CATG 4 cut(s) 119, 220, 238, 761
CviQI GTAC 3 cut(s) 391, 725, 977
DdeI CTNAG 4 cut(s) 21, 432, 632, 705
DpnI GATC 4 cut(s) 93, 561, 1046, 1077
DpnII GATC 4 cut(s) 91, 559, 1044, 1075
DraIII CACNNNGTG 1 cut(s) 1063
Eam1104I CTCTTC 2 cut(s) 421, 804
EarI CTCTTC 2 cut(s) 421, 804
Ecl136II GAGCTC 1 cut(s) 767
Eco130I CCWWGG 1 cut(s) 476
Eco24I GRGCYC 1 cut(s) 769
Eco32I GATATC 1 cut(s) 502
Eco47I GGWCC 1 cut(s) 359
Eco53kI GAGCTC 1 cut(s) 767
Eco57I CTGAAG 3 cut(s) 279, 641, 1058
EcoICRI GAGCTC 1 cut(s) 767
EcoO109I RGGNCCY 1 cut(s) 359
EcoRI GAATTC 1 cut(s) 837
EcoRII CCWGG 2 cut(s) 128, 361
EcoRV GATATC 1 cut(s) 502
EcoT14I CCWWGG 1 cut(s) 476
EcoT22I ATGCAT 2 cut(s) 79, 124
EcoT38I GRGCYC 1 cut(s) 769
ErhI CCWWGG 1 cut(s) 476
Esp3I CGTCTC 1 cut(s) 757
FaeI CATG 4 cut(s) 122, 223, 241, 764
FalI AAGNNNNNCTT 2 cut(s) 161, 193
FaqI GGGAC 1 cut(s) 770
FatI CATG 4 cut(s) 118, 219, 237, 760
FauI CCCGC 1 cut(s) 1058
FauNDI CATATG 1 cut(s) 604
FblI GTMKAC 2 cut(s) 621, 925
Fnu4HI GCNGC 8 cut(s) 285, 288, 291, 294, 524, 738, 825, 948
FokI GGATG 5 cut(s) 240, 656, 722, 866, 1038
FriOI GRGCYC 1 cut(s) 769
Fsp4HI GCNGC 8 cut(s) 285, 288, 291, 294, 524, 738, 825, 948
FspBI CTAG 1 cut(s) 719
GlaI GCGC 1 cut(s) 488
GluI GCNGC 8 cut(s) 285, 288, 291, 294, 524, 738, 825, 948
HaeIII GGCC 3 cut(s) 145, 452, 834
HapII CCGG 1 cut(s) 142
HhaI GCGC 1 cut(s) 489
Hin1II CATG 4 cut(s) 122, 223, 241, 764
Hin6I GCGC 1 cut(s) 487
HinP1I GCGC 1 cut(s) 487
HincII GTYRAC 1 cut(s) 622
HindII GTYRAC 1 cut(s) 622
HinfI GANTC 2 cut(s) 100, 587
HpaII CCGG 1 cut(s) 142
HphI GGTGA 3 cut(s) 658, 968, 1039
Hpy166II GTNNAC 5 cut(s) 99, 391, 469, 622, 926
Hpy188I TCNGA 5 cut(s) 22, 425, 566, 660, 1086
Hpy188III TCNNGA 5 cut(s) 220, 257, 505, 591, 992
Hpy8I GTNNAC 5 cut(s) 99, 391, 469, 622, 926
HpyAV CCTTC 3 cut(s) 254, 634, 1033
HpyCH4III ACNGT 3 cut(s) 190, 315, 466
HpyCH4IV ACGT 1 cut(s) 1059
HpyF3I CTNAG 4 cut(s) 21, 432, 632, 705
HpySE526I ACGT 1 cut(s) 1059
Hsp92II CATG 4 cut(s) 122, 223, 241, 764
HspAI GCGC 1 cut(s) 487
KspI CCGCGG 1 cut(s) 294
Kzo9I GATC 4 cut(s) 91, 559, 1044, 1075
LguI GCTCTTC 1 cut(s) 421
LmnI GCTCC 5 cut(s) 232, 734, 764, 902, 1096
Lsp1109I GCAGC 5 cut(s) 296, 299, 724, 811, 934
LweI GCATC 5 cut(s) 86, 359, 608, 700, 914
MaeI CTAG 1 cut(s) 719
MaeII ACGT 1 cut(s) 1059
MaeIII GTNAC 2 cut(s) 409, 1063
MalI GATC 4 cut(s) 93, 561, 1046, 1077
MboI GATC 4 cut(s) 91, 559, 1044, 1075
MboII GAAGA 4 cut(s) 256, 309, 438, 821
MfeI CAATTG 1 cut(s) 33
MflI RGATCY 1 cut(s) 559
MhlI GDGCHC 1 cut(s) 769
MluCI AATT 9 cut(s) 33, 47, 303, 529, 671, 678, 696, 744, 837
MlyI GAGTC 1 cut(s) 94
MmeI TCCRAC 1 cut(s) 403
Mph1103I ATGCAT 2 cut(s) 79, 124
MseI TTAA 1 cut(s) 1019
MslI CAYNNNNRTG 1 cut(s) 305
MspA1I CMGCKG 2 cut(s) 293, 636
MspI CCGG 1 cut(s) 142
MspR9I CCNGG 2 cut(s) 130, 363
MunI CAATTG 1 cut(s) 33
Mva1269I GAATGC 1 cut(s) 366
MvaI CCWGG 2 cut(s) 130, 363
MvnI CGCG 2 cut(s) 293, 1053
NdeI CATATG 1 cut(s) 604
NdeII GATC 4 cut(s) 91, 559, 1044, 1075
NlaIII CATG 4 cut(s) 122, 223, 241, 764
NmuCI GTSAC 2 cut(s) 409, 1063
NsiI ATGCAT 2 cut(s) 79, 124
NspI RCATGY 1 cut(s) 122
PagI TCATGA 1 cut(s) 219
PciSI GCTCTTC 1 cut(s) 421
PctI GAATGC 1 cut(s) 366
PfeI GAWTC 1 cut(s) 587
PflFI GACNNNGTC 1 cut(s) 313
PflMI CCANNNNNTGG 1 cut(s) 482
PfoI TCCNGGA 1 cut(s) 128
PkrI GCNGC 8 cut(s) 286, 289, 292, 295, 525, 739, 826, 949
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PpuMI RGGWCCY 1 cut(s) 359
PsiI TTATAA 1 cut(s) 1102
Psp124BI GAGCTC 1 cut(s) 769
Psp5II RGGWCCY 1 cut(s) 359
Psp6I CCWGG 2 cut(s) 128, 361
PspGI CCWGG 2 cut(s) 128, 361
PspPI GGNCC 1 cut(s) 359
PspPPI RGGWCCY 1 cut(s) 359
PstI CTGCAG 1 cut(s) 742
PstNI CAGNNNCTG 1 cut(s) 362
PsuI RGATCY 1 cut(s) 559
PsyI GACNNNGTC 1 cut(s) 313
PvuII CAGCTG 1 cut(s) 636
RsaI GTAC 3 cut(s) 392, 726, 978
RsaNI GTAC 3 cut(s) 391, 725, 977
RseI CAYNNNNRTG 1 cut(s) 305
SacI GAGCTC 1 cut(s) 769
SacII CCGCGG 1 cut(s) 294
SalI GTCGAC 1 cut(s) 620
SapI GCTCTTC 1 cut(s) 421
SaqAI TTAA 1 cut(s) 1019
SatI GCNGC 8 cut(s) 285, 288, 291, 294, 524, 738, 825, 948
Sau3AI GATC 4 cut(s) 91, 559, 1044, 1075
Sau96I GGNCC 1 cut(s) 359
ScaI AGTACT 1 cut(s) 978
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 2 cut(s) 130, 363
SduI GDGCHC 1 cut(s) 769
SfaNI GCATC 5 cut(s) 86, 359, 608, 700, 914
SfcI CTRYAG 1 cut(s) 738
Sfr303I CCGCGG 1 cut(s) 294
SgrBI CCGCGG 1 cut(s) 294
SinI GGWCC 1 cut(s) 359
SmiMI CAYNNNNRTG 1 cut(s) 305
SmlI CTYRAG 2 cut(s) 104, 178
SmoI CTYRAG 2 cut(s) 104, 178
Sse9I AATT 9 cut(s) 33, 47, 303, 529, 671, 678, 696, 744, 837
SsiI CCGC 6 cut(s) 234, 291, 293, 524, 722, 1051
SspI AATATT 1 cut(s) 205
SspMI CTAG 1 cut(s) 719
SstI GAGCTC 1 cut(s) 769
StyD4I CCNGG 2 cut(s) 128, 361
StyI CCWWGG 1 cut(s) 476
TaaI ACNGT 3 cut(s) 190, 315, 466
TaiI ACGT 1 cut(s) 1062
TaqI TCGA 1 cut(s) 621
TasI AATT 9 cut(s) 33, 47, 303, 529, 671, 678, 696, 744, 837
TatI WGTACW 2 cut(s) 390, 976
TauI GCSGC 3 cut(s) 293, 296, 526
TfiI GAWTC 1 cut(s) 587
Tru1I TTAA 1 cut(s) 1019
Tru9I TTAA 1 cut(s) 1019
TscAI CASTG 4 cut(s) 101, 318, 340, 936
TseFI GTSAC 2 cut(s) 409, 1063
TseI GCWGC 5 cut(s) 284, 287, 737, 824, 947
Tsp45I GTSAC 2 cut(s) 409, 1063
TspRI CASTG 4 cut(s) 101, 318, 340, 936
Tth111I GACNNNGTC 1 cut(s) 313
Van91I CCANNNNNTGG 1 cut(s) 482
VpaK11BI GGWCC 1 cut(s) 359
XapI RAATTY 2 cut(s) 529, 837
XceI RCATGY 1 cut(s) 122
XcmI CCANNNNNNNNNTGG 1 cut(s) 244
XmiI GTMKAC 2 cut(s) 621, 925
XspI CTAG 1 cut(s) 719
ZrmI AGTACT 1 cut(s) 978
Zsp2I ATGCAT 2 cut(s) 79, 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.