Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002723

Physical Location & Seq

Genomic Coordinates Reverse (-)

10583261 .. 10586973

Gene Structure 3713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G009780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGAGATGATCACCAATGTTTCCGAGTATGAGAAGATTGCAAAGGAGAAATTGCCAAAGATGGTTTATGACTACTATGCATCTGGTGCAGAGGACCAGTGGACTCTTAAGGAGAACAAACGCGCTTTCTCCAGGATTTTGTTTCGACCTCGTATTCTTATTGATGTAAGCAAGATAGACATGAGAACAACAGTTTTGGGATTCAATATTTCAATGCCCATCATGATAGCTCCTACAGCCATGCAGAAGATGGCTCACCCTGAAGGAGAGTTTGCAACAGCAAGAGCAGCATCTGCAGCTAACACAATTATGACACTGTCCTCTTGGGCTACTTCCAGTGTCGAAGAGGTCGCATCAACAGGACCTGGCATTCGTTTTTTCCAACTCTATGTGTACAAAGACAGGAATGTGGTTGCACAGCTTGTCAAAAGAGCTGAGAAAGCTGGTTTCAAGGCAATAGCCCTTACAGTGGACACTCCACGGCTTGGGCGCAGGGAGGCTGATATCAAGAACAGATTTACTTTACCATCAAATTTGACATTGAAGAACTTTGAGAATATTGATCTCGGAAAGATGGACAAGACCAATGATTCTGGACTAGCATCATATGTTGCTGGACAAATTGACCGGTCTCTCAGCTGGAAGGACGTGAAATGGCTTCAGACAATCACCCATTTACCGATTCTTGTAAAGGGTGTGATTACAGCTGAGGATGCACAACTAGCTGTACAATATGGAGCTGCAGGAATAATTGTCTCGAACCATGGAGCTCGCCAGCTTGATTATGTCCCCTCAACTATTATGGCTTTGGAAGAGGTCGTCAAAGCTACACGAGGGGCAATTCCTGTCTTCTTGGATGGTGGAGTGAGGCGAGGAACGGATGTTTTCAAAGCTCTGGCTCTTGGAGCATCGGGTGTATTTGTGAGTAAAATTGACACTTATATATCAGAAGCTAGATGCTGCAAATGTGGAACTTATAAGATCTTTTGTGATCTATTTTATAACCTCAGAACTAACCTGATACTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009853 GO:0009987 GO:0010033 GO:0010109 GO:0016020 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0022626 GO:0030054 GO:0031323 GO:0032991 GO:0035821 GO:0042221 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050665 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0055044 GO:0055114 GO:0065007 GO:0072593 GO:0098542 GO:1903409 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

343

Amino Acids

38.03

Weight (kDa)

9.25

Isoelectric Point (pI)

30.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	14 - 310	2.1e-118	FMN-dependent dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18360 AT4G18360 AT4G18360 AT4G18360
fragaria_vesca	FvH4_3g05330 FvH4_3g05330 FvH4_3g05330 FvH4_3g05330
malus_domestica	MD05G1281900.v1.1 MD10G1260600.v1.1
prunus_persica	Prupe.4G082600_v2.0.a1 Prupe.4G082600_v2.0.a1 Prupe.4G082600_v2.0.a1 Prupe.4G082600_v2.0.a1 Prupe.4G082600_v2.0.a1
pyrus_communis	pycom05g26180 pycom10g21660
rosa_chinensis	RchiOBHm_Chr5g0014411 RchiOBHm_Chr6g0278091 RchiOBHm_Chr6g0278121 RchiOBHm_Chr6g0278131
rosa_laevigata	RLG00000013240 RLG00000032106
rosa_multiflora	Rmu_sc0000791.1_g000023 Rmu_sc0000791.1_g000034 Rmu_sc0000791.1_g000050 Rmu_ssc0000422.1_g000039
rosa_roxburghii	Rroxscaffold_1G00062170 Rroxscaffold_7G00190510 Rroxscaffold_7G00190520
rosa_rugosa	Rorug05G0017900 Rorug06G0114800
rosa_samantha	Rh5AG112700 Rh6BG228600 Rh6CG231000
rosa_wichuraiana	Rw5G009780 Rw6G019610 Rw6G019640 Rw6G019650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	978, 1002
AccB7I	CCANNNNNTGG	1 cut(s)	485
AccII	CGCG	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	532
AcuI	CTGAAG	2 cut(s)	282, 644
AfaI	GTAC	2 cut(s)	395, 729
AfiI	CCNNNNNNNGG	2 cut(s)	469, 485
AflII	CTTAAG	1 cut(s)	107
AgeI	ACCGGT	1 cut(s)	627
AgsI	TTSAA	5 cut(s)	205, 213, 451, 544, 889
AjiI	CACGTC	1 cut(s)	649
AjnI	CCWGG	2 cut(s)	131, 364
Alw21I	GWGCWC	1 cut(s)	772
Alw26I	GTCTC	2 cut(s)	636, 760
AlwNI	CAGNNNCTG	2 cut(s)	293, 365
ApeKI	GCWGC	4 cut(s)	287, 296, 740, 960
ApoI	RAATTY	1 cut(s)	532
ArsI	GACNNNNNNTTYG	2 cut(s)	354, 386
AsiGI	ACCGGT	1 cut(s)	627
AspLEI	GCGC	2 cut(s)	125, 492
AspS9I	GGNCC	2 cut(s)	94, 362
AsuHPI	GGTGA	3 cut(s)	4, 248, 661
AvaII	GGWCC	2 cut(s)	94, 362
BaeI	ACNNNNGTAYC	1 cut(s)	1013
BanII	GRGCYC	1 cut(s)	772
BauI	CACGAG	1 cut(s)	831
BbsI	GAAGAC	1 cut(s)	841
Bbv12I	GWGCWC	1 cut(s)	772
BbvCI	CCTCAGC	1 cut(s)	708
BbvI	GCAGC	4 cut(s)	299, 308, 727, 947
BccI	CCATC	6 cut(s)	55, 227, 244, 535, 568, 851
BceAI	ACGGC	1 cut(s)	497
BciT130I	CCWGG	2 cut(s)	133, 366
BclI	TGATCA	1 cut(s)	9
BcoDI	GTCTC	2 cut(s)	636, 760
BfaI	CTAG	3 cut(s)	599, 722, 954
BfmI	CTRYAG	3 cut(s)	234, 294, 741
BfrI	CTTAAG	1 cut(s)	107
BglII	AGATCT	1 cut(s)	981
BisI	GCNGC	4 cut(s)	288, 297, 741, 961
BlsI	GCNGC	4 cut(s)	289, 298, 742, 962
Bme1390I	CCNGG	2 cut(s)	133, 366
Bme18I	GGWCC	2 cut(s)	94, 362
BmgBI	CACGTC	1 cut(s)	649
BmgT120I	GGNCC	2 cut(s)	94, 362
BmrFI	CCNGG	2 cut(s)	133, 366
BmsI	GCATC	7 cut(s)	89, 299, 362, 611, 703, 917, 947
BpiI	GAAGAC	1 cut(s)	841
BpmI	CTGGAG	1 cut(s)	115
Bpu10I	CCTNAGC	1 cut(s)	708
BsaI	GGTCTC	1 cut(s)	636
BsaJI	CCNNGG	2 cut(s)	479, 763
BsaWI	WCCGGW	1 cut(s)	627
Bsc4I	CCNNNNNNNGG	2 cut(s)	469, 485
Bse118I	RCCGGY	1 cut(s)	627
Bse1I	ACTGG	2 cut(s)	97, 336
BseBI	CCWGG	2 cut(s)	133, 366
BseDI	CCNNGG	2 cut(s)	479, 763
BseGI	GGATG	3 cut(s)	718, 862, 886
BseLI	CCNNNNNNNGG	2 cut(s)	469, 485
BseMII	CTCAG	4 cut(s)	426, 649, 699, 1021
BseNI	ACTGG	2 cut(s)	97, 336
BseXI	GCAGC	4 cut(s)	299, 308, 727, 947
BsgI	GTGCAG	1 cut(s)	108
Bsh1236I	CGCG	1 cut(s)	123
BshTI	ACCGGT	1 cut(s)	627
BsiHKAI	GWGCWC	1 cut(s)	772
BsiSI	CCGG	1 cut(s)	628
BslFI	GGGAC	1 cut(s)	773
BslI	CCNNNNNNNGG	2 cut(s)	469, 485
BsmAI	GTCTC	2 cut(s)	636, 760
BsmFI	GGGAC	1 cut(s)	773
BsmI	GAATGC	1 cut(s)	369
Bso31I	GGTCTC	1 cut(s)	636
Bsp1286I	GDGCHC	1 cut(s)	772
Bsp1407I	TGTACA	2 cut(s)	393, 727
Bsp143I	GATC	4 cut(s)	9, 562, 981, 991
Bsp19I	CCATGG	1 cut(s)	763
BspCNI	CTCAG	4 cut(s)	427, 648, 700, 1020
BspFNI	CGCG	1 cut(s)	123
BspHI	TCATGA	1 cut(s)	222
BspMAI	CTGCAG	2 cut(s)	298, 745
BspTI	CTTAAG	1 cut(s)	107
BspTNI	GGTCTC	1 cut(s)	636
BsrFI	RCCGGY	1 cut(s)	627
BsrGI	TGTACA	2 cut(s)	393, 727
BsrI	ACTGG	2 cut(s)	97, 336
BssAI	RCCGGY	1 cut(s)	627
BssECI	CCNNGG	2 cut(s)	479, 763
BssMI	GATC	4 cut(s)	9, 562, 981, 991
BssSI	CACGAG	1 cut(s)	831
BssT1I	CCWWGG	1 cut(s)	763
Bst2BI	CACGAG	1 cut(s)	831
Bst2UI	CCWGG	2 cut(s)	133, 366
Bst4CI	ACNGT	3 cut(s)	193, 318, 469
Bst6I	CTCTTC	2 cut(s)	339, 807
BstAFI	CTTAAG	1 cut(s)	107
BstAPI	GCANNNNNTGC	2 cut(s)	86, 293
BstAUI	TGTACA	2 cut(s)	393, 727
BstC8I	GCNNGC	2 cut(s)	772, 776
BstDEI	CTNAG	4 cut(s)	435, 635, 708, 1007
BstDSI	CCRYGG	2 cut(s)	479, 763
BstF5I	GGATG	3 cut(s)	718, 862, 886
BstFNI	CGCG	1 cut(s)	123
BstHHI	GCGC	2 cut(s)	125, 492
BstKTI	GATC	4 cut(s)	12, 565, 984, 994
BstMAI	GTCTC	2 cut(s)	636, 760
BstMBI	GATC	4 cut(s)	9, 562, 981, 991
BstMWI	GCNNNNNNNGC	9 cut(s)	86, 236, 287, 293, 296, 440, 713, 722, 905
BstNI	CCWGG	2 cut(s)	133, 366
BstSCI	CCNGG	2 cut(s)	131, 364
BstSFI	CTRYAG	3 cut(s)	234, 294, 741
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	4 cut(s)	299, 308, 727, 947
BstV2I	GAAGAC	1 cut(s)	841
BstX2I	RGATCY	1 cut(s)	981
BstYI	RGATCY	1 cut(s)	981
BtgI	CCRYGG	2 cut(s)	479, 763
BtrI	CACGTC	1 cut(s)	649
BtsCI	GGATG	3 cut(s)	718, 862, 886
BtsIMutI	CAGTG	4 cut(s)	104, 314, 343, 474
Cac8I	GCNNGC	2 cut(s)	772, 776
CaiI	CAGNNNCTG	2 cut(s)	293, 365
CciI	TCATGA	1 cut(s)	222
CfoI	GCGC	2 cut(s)	125, 492
Cfr10I	RCCGGY	1 cut(s)	627
Cfr13I	GGNCC	2 cut(s)	94, 362
Csp6I	GTAC	2 cut(s)	394, 728
CspAI	ACCGGT	1 cut(s)	627
CviAII	CATG	4 cut(s)	181, 223, 241, 764
CviQI	GTAC	2 cut(s)	394, 728
DdeI	CTNAG	4 cut(s)	435, 635, 708, 1007
DpnI	GATC	4 cut(s)	11, 564, 983, 993
DpnII	GATC	4 cut(s)	9, 562, 981, 991
Eam1104I	CTCTTC	2 cut(s)	339, 807
EarI	CTCTTC	2 cut(s)	339, 807
Ecl136II	GAGCTC	1 cut(s)	770
Eco130I	CCWWGG	1 cut(s)	763
Eco24I	GRGCYC	1 cut(s)	772
Eco31I	GGTCTC	1 cut(s)	636
Eco32I	GATATC	1 cut(s)	505
Eco47I	GGWCC	2 cut(s)	94, 362
Eco53kI	GAGCTC	1 cut(s)	770
Eco57I	CTGAAG	2 cut(s)	282, 644
EcoICRI	GAGCTC	1 cut(s)	770
EcoO109I	RGGNCCY	1 cut(s)	362
EcoRII	CCWGG	2 cut(s)	131, 364
EcoRV	GATATC	1 cut(s)	505
EcoT14I	CCWWGG	1 cut(s)	763
EcoT22I	ATGCAT	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	772
ErhI	CCWWGG	1 cut(s)	763
FaeI	CATG	4 cut(s)	184, 226, 244, 767
FaqI	GGGAC	1 cut(s)	773
FatI	CATG	4 cut(s)	180, 222, 240, 763
FauNDI	CATATG	1 cut(s)	607
FbaI	TGATCA	1 cut(s)	9
Fnu4HI	GCNGC	4 cut(s)	288, 297, 741, 961
FokI	GGATG	3 cut(s)	725, 869, 893
FriOI	GRGCYC	1 cut(s)	772
Fsp4HI	GCNGC	4 cut(s)	288, 297, 741, 961
FspBI	CTAG	3 cut(s)	599, 722, 954
GlaI	GCGC	2 cut(s)	124, 491
GluI	GCNGC	4 cut(s)	288, 297, 741, 961
GsuI	CTGGAG	1 cut(s)	115
HapII	CCGG	1 cut(s)	628
HhaI	GCGC	2 cut(s)	125, 492
Hin1II	CATG	4 cut(s)	184, 226, 244, 767
Hin6I	GCGC	2 cut(s)	123, 490
HinP1I	GCGC	2 cut(s)	123, 490
HinfI	GANTC	4 cut(s)	103, 201, 590, 682
HpaII	CCGG	1 cut(s)	628
HphI	GGTGA	3 cut(s)	4, 248, 661
Hpy166II	GTNNAC	3 cut(s)	102, 394, 472
Hpy188I	TCNGA	5 cut(s)	25, 569, 663, 949, 1010
Hpy188III	TCNNGA	4 cut(s)	223, 508, 594, 757
Hpy8I	GTNNAC	3 cut(s)	102, 394, 472
HpyAV	CCTTC	2 cut(s)	257, 637
HpyCH4III	ACNGT	3 cut(s)	193, 318, 469
HpyCH4IV	ACGT	1 cut(s)	648
HpyF10VI	GCNNNNNNNGC	9 cut(s)	86, 236, 287, 293, 296, 440, 713, 722, 905
HpyF3I	CTNAG	4 cut(s)	435, 635, 708, 1007
HpySE526I	ACGT	1 cut(s)	648
Hsp92II	CATG	4 cut(s)	184, 226, 244, 767
HspAI	GCGC	2 cut(s)	123, 490
Ksp22I	TGATCA	1 cut(s)	9
Kzo9I	GATC	4 cut(s)	9, 562, 981, 991
LmnI	GCTCC	4 cut(s)	235, 737, 767, 905
Lsp1109I	GCAGC	4 cut(s)	299, 308, 727, 947
LweI	GCATC	7 cut(s)	89, 299, 362, 611, 703, 917, 947
MaeI	CTAG	3 cut(s)	599, 722, 954
MaeII	ACGT	1 cut(s)	648
MalI	GATC	4 cut(s)	11, 564, 983, 993
MboI	GATC	4 cut(s)	9, 562, 981, 991
MboII	GAAGA	6 cut(s)	46, 259, 356, 556, 824, 841
MflI	RGATCY	1 cut(s)	981
MhlI	GDGCHC	1 cut(s)	772
MluCI	AATT	7 cut(s)	50, 306, 532, 621, 750, 840, 930
MlyI	GAGTC	1 cut(s)	97
MmeI	TCCRAC	1 cut(s)	406
Mph1103I	ATGCAT	1 cut(s)	82
MseI	TTAA	1 cut(s)	108
MslI	CAYNNNNRTG	1 cut(s)	308
MspA1I	CMGCKG	2 cut(s)	639, 707
MspCI	CTTAAG	1 cut(s)	107
MspI	CCGG	1 cut(s)	628
MspR9I	CCNGG	2 cut(s)	133, 366
Mva1269I	GAATGC	1 cut(s)	369
MvaI	CCWGG	2 cut(s)	133, 366
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	9 cut(s)	86, 236, 287, 293, 296, 440, 713, 722, 905
NcoI	CCATGG	1 cut(s)	763
NdeI	CATATG	1 cut(s)	607
NdeII	GATC	4 cut(s)	9, 562, 981, 991
NlaIII	CATG	4 cut(s)	184, 226, 244, 767
NsiI	ATGCAT	1 cut(s)	82
PagI	TCATGA	1 cut(s)	222
PctI	GAATGC	1 cut(s)	369
PfeI	GAWTC	3 cut(s)	201, 590, 682
PflFI	GACNNNGTC	1 cut(s)	316
PflMI	CCANNNNNTGG	1 cut(s)	485
PfoI	TCCNGGA	1 cut(s)	131
PinAI	ACCGGT	1 cut(s)	627
PkrI	GCNGC	4 cut(s)	289, 298, 742, 962
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PpuMI	RGGWCCY	1 cut(s)	362
PsiI	TTATAA	2 cut(s)	978, 1002
Psp124BI	GAGCTC	1 cut(s)	772
Psp5II	RGGWCCY	1 cut(s)	362
Psp6I	CCWGG	2 cut(s)	131, 364
PspGI	CCWGG	2 cut(s)	131, 364
PspPI	GGNCC	2 cut(s)	94, 362
PspPPI	RGGWCCY	1 cut(s)	362
PstI	CTGCAG	2 cut(s)	298, 745
PstNI	CAGNNNCTG	2 cut(s)	293, 365
PsuI	RGATCY	1 cut(s)	981
PsyI	GACNNNGTC	1 cut(s)	316
PvuII	CAGCTG	2 cut(s)	639, 707
RsaI	GTAC	2 cut(s)	395, 729
RsaNI	GTAC	2 cut(s)	394, 728
RseI	CAYNNNNRTG	1 cut(s)	308
SacI	GAGCTC	1 cut(s)	772
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	4 cut(s)	288, 297, 741, 961
Sau3AI	GATC	4 cut(s)	9, 562, 981, 991
Sau96I	GGNCC	2 cut(s)	94, 362
SchI	GAGTC	1 cut(s)	97
ScrFI	CCNGG	2 cut(s)	133, 366
SduI	GDGCHC	1 cut(s)	772
SfaNI	GCATC	7 cut(s)	89, 299, 362, 611, 703, 917, 947
SfcI	CTRYAG	3 cut(s)	234, 294, 741
SinI	GGWCC	2 cut(s)	94, 362
SmiMI	CAYNNNNRTG	1 cut(s)	308
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	7 cut(s)	50, 306, 532, 621, 750, 840, 930
SspI	AATATT	2 cut(s)	208, 559
SspMI	CTAG	3 cut(s)	599, 722, 954
SstI	GAGCTC	1 cut(s)	772
StyD4I	CCNGG	2 cut(s)	131, 364
StyI	CCWWGG	1 cut(s)	763
TaaI	ACNGT	3 cut(s)	193, 318, 469
TaiI	ACGT	1 cut(s)	651
TaqI	TCGA	3 cut(s)	145, 342, 758
TasI	AATT	7 cut(s)	50, 306, 532, 621, 750, 840, 930
TatI	WGTACW	2 cut(s)	393, 727
TfiI	GAWTC	3 cut(s)	201, 590, 682
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	4 cut(s)	104, 321, 343, 474
TseI	GCWGC	4 cut(s)	287, 296, 740, 960
TspGWI	ACGGA	1 cut(s)	893
TspRI	CASTG	4 cut(s)	104, 321, 343, 474
Tth111I	GACNNNGTC	1 cut(s)	316
Van91I	CCANNNNNTGG	1 cut(s)	485
Vha464I	CTTAAG	1 cut(s)	107
VpaK11BI	GGWCC	2 cut(s)	94, 362
XapI	RAATTY	1 cut(s)	532
XcmI	CCANNNNNNNNNTGG	1 cut(s)	247
XspI	CTAG	3 cut(s)	599, 722, 954
Zsp2I	ATGCAT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.