Rroxscaffold_7G00190520

Peroxisomal (S)-2-hydroxy-acid oxidase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
30662054 .. 30666508
4455 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00190520.1

Sequence Viewer

Length: 1107 bp
ATGGATCAAATAACCAATGTTTCTGAGTATGAAGCAATTGCAAAGAAGAATTTGCCGAAGATGGTTTACGACTACTATGCATCAGGTGCAGAGGACCAGTGGACTCTTAAGGAGAATCTACTTGCATTTTCCAGGATTTTGTTTCGACCTCGAATTCTTATTGATGTAAGCACAATAGACTTGAGCACAACTATTTTGGGCTTCAAAGTTTCAATGCCCATCATGATTGCTCCTACAGGCATGCAGAAGATGGCTCACCCTGAAGGAGAGTGTGCAACCGCAAGAGCAGCATCTGCAGCTGGCACAATTATGACACTGTCCACTGTGGCTAATTCCAGCATTGAAGAAGTTGCCTCAACAGGACCTGGTATTCGCTTGTTCCAACTCTATGTGTTGAAAGACAGGAATCTGGTTACACAGCTTGTCAGAAGGGCTGAGAGGGCTGGTTACAAGGCAATAGTCCTCACTGCTGACACTCCGAGGCTCGGGCACAGGGAGGCTGATATCAAGAACAGGTTTACCATGTCACCTAGTTTGACATTGAAAAACTTCGAAAATTTGGATCTTGGAAAGATTGATGAGACCAATGATTCTGGATTAGCATCATATGTTGCTAGACTAATTGACTGCTCTCTCAGCTGGAAGGATGTGAAGTGGCTTCAGACTATCACTACATTACCAATTCTGATAAAGGGTGTAATTACTGCTGAGGATACAAGGTTATGCATACAAGCTGGAGCTGCAGGAATAATTGTATCCAATCATGGAGCTCGGCAACTAGATTATGTCCCTGCAACTATTATGGCTTTGGAAGAGGTCGTCAAAGCTGCAGAGGGTCAAATTCCTGTTTTTCTGGATGGTGGAGTGAGGCGAGGAACAGATGTTTTTAAAGCTTTGGCTCTTGGAGCATCGGGTGTATTTATTGGTAGACCAGTGGTGTTCTCATTAGCTGCTGCCGGTGAGGCTGGTGTAAGGAAAGTACTTCAAATGCTCCGTGATGAGCTTGAGCTAACAATGGCATTAAGTGGTTGCTGCTCGCTAAAGGAGATAAGGCGTGACCACATTGTGGCAGAATGGGACGCTCCTCGTATTGCTCCCAGATTGTAG

Protein Analysis

368

Amino Acids

40.14

Weight (kDa)

7.62

Isoelectric Point (pI)

30.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMN_dh PF01070 14 - 355 1.5e-137 FMN-dependent dehydrogenase
NMO PF03060 228 - 343 4.3e-07 Nitronate monooxygenase
IMPDH PF00478 266 - 313 3.4e-06 IMP dehydrogenase / GMP reductase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1066
AccI GTMKAC 1 cut(s) 928
AciI CCGC 1 cut(s) 279
AclWI GGATC 2 cut(s) 12, 570
AcsI RAATTY 4 cut(s) 49, 153, 556, 840
AcuI CTGAAG 2 cut(s) 282, 644
AdeI CACNNNGTG 1 cut(s) 1066
AfaI GTAC 1 cut(s) 981
AfiI CCNNNNNNNGG 2 cut(s) 485, 1066
AflII CTTAAG 1 cut(s) 107
AgsI TTSAA 6 cut(s) 205, 213, 344, 397, 544, 986
AjnI CCWGG 2 cut(s) 131, 364
Alw21I GWGCWC 2 cut(s) 188, 772
Alw26I GTCTC 1 cut(s) 575
AlwI GGATC 2 cut(s) 12, 570
AlwNI CAGNNNCTG 2 cut(s) 293, 365
Ama87I CYCGRG 1 cut(s) 485
ApeKI GCWGC 7 cut(s) 287, 296, 740, 827, 950, 953, 1032
ApoI RAATTY 4 cut(s) 49, 153, 556, 840
ArsI GACNNNNNNTTYG 2 cut(s) 354, 386
Asp700I GAANNNNTTC 1 cut(s) 548
AspS9I GGNCC 2 cut(s) 94, 362
AsuHPI GGTGA 3 cut(s) 248, 519, 971
AsuII TTCGAA 1 cut(s) 552
AvaI CYCGRG 1 cut(s) 485
AvaII GGWCC 2 cut(s) 94, 362
BaeGI GKGCMC 1 cut(s) 492
BanII GRGCYC 1 cut(s) 772
BarI GAAGNNNNNNTAC 2 cut(s) 50, 82
Bbv12I GWGCWC 2 cut(s) 188, 772
BbvCI CCTCAGC 1 cut(s) 708
BbvI GCAGC 7 cut(s) 299, 308, 727, 814, 937, 940, 1019
BccI CCATC 4 cut(s) 55, 227, 244, 851
BcgI CGANNNNNNTGC 2 cut(s) 59, 93
BciT130I CCWGG 2 cut(s) 133, 366
BciVI GTATCC 2 cut(s) 706, 766
BcoDI GTCTC 1 cut(s) 575
BfaI CTAG 3 cut(s) 531, 615, 779
BfmI CTRYAG 4 cut(s) 234, 294, 741, 828
BfrI CTTAAG 1 cut(s) 107
BfuI GTATCC 2 cut(s) 706, 766
BglI GCCNNNNNGGC 1 cut(s) 962
BisI GCNGC 7 cut(s) 288, 297, 741, 828, 951, 954, 1033
BlsI GCNGC 7 cut(s) 289, 298, 742, 829, 952, 955, 1034
BmcAI AGTACT 1 cut(s) 981
Bme1390I CCNGG 2 cut(s) 133, 366
Bme18I GGWCC 2 cut(s) 94, 362
BmeT110I CYCGRG 1 cut(s) 485
BmgT120I GGNCC 2 cut(s) 94, 362
BmrFI CCNGG 2 cut(s) 133, 366
BmsI GCATC 4 cut(s) 89, 299, 611, 917
BpmI CTGGAG 1 cut(s) 756
Bpu10I CCTNAGC 1 cut(s) 708
Bpu14I TTCGAA 1 cut(s) 552
BpuEI CTTGAG 2 cut(s) 202, 1025
BsaBI GATNNNNATC 1 cut(s) 601
BsaI GGTCTC 1 cut(s) 575
BsaJI CCNNGG 1 cut(s) 479
Bsc4I CCNNNNNNNGG 2 cut(s) 485, 1066
Bse118I RCCGGY 1 cut(s) 956
Bse1I ACTGG 2 cut(s) 97, 932
Bse8I GATNNNNATC 1 cut(s) 601
BseBI CCWGG 2 cut(s) 133, 366
BseDI CCNNGG 1 cut(s) 479
BseGI GGATG 2 cut(s) 652, 862
BseJI GATNNNNATC 1 cut(s) 601
BseLI CCNNNNNNNGG 2 cut(s) 485, 1066
BseMII CTCAG 4 cut(s) 15, 426, 649, 699
BseNI ACTGG 2 cut(s) 97, 932
BseRI GAGGAG 1 cut(s) 1074
BseSI GKGCMC 1 cut(s) 492
BseXI GCAGC 7 cut(s) 299, 308, 727, 814, 937, 940, 1019
BsgI GTGCAG 1 cut(s) 108
BsiHKAI GWGCWC 2 cut(s) 188, 772
BsiHKCI CYCGRG 1 cut(s) 485
BsiSI CCGG 1 cut(s) 957
BslFI GGGAC 2 cut(s) 773, 1091
BslI CCNNNNNNNGG 2 cut(s) 485, 1066
BsmAI GTCTC 1 cut(s) 575
BsmFI GGGAC 2 cut(s) 773, 1091
Bso31I GGTCTC 1 cut(s) 575
BsoBI CYCGRG 1 cut(s) 485
Bsp119I TTCGAA 1 cut(s) 552
Bsp1286I GDGCHC 3 cut(s) 188, 492, 772
Bsp143I GATC 2 cut(s) 4, 562
BspACI CCGC 1 cut(s) 279
BspCNI CTCAG 4 cut(s) 16, 427, 648, 700
BspHI TCATGA 1 cut(s) 222
BspMAI CTGCAG 3 cut(s) 298, 745, 832
BspPI GGATC 2 cut(s) 12, 570
BspT104I TTCGAA 1 cut(s) 552
BspTI CTTAAG 1 cut(s) 107
BspTNI GGTCTC 1 cut(s) 575
BsrFI RCCGGY 1 cut(s) 956
BsrI ACTGG 2 cut(s) 97, 932
BssAI RCCGGY 1 cut(s) 956
BssECI CCNNGG 1 cut(s) 479
BssMI GATC 2 cut(s) 4, 562
Bst2UI CCWGG 2 cut(s) 133, 366
Bst4CI ACNGT 2 cut(s) 318, 325
Bst6I CTCTTC 1 cut(s) 807
BstAFI CTTAAG 1 cut(s) 107
BstAPI GCANNNNNTGC 2 cut(s) 86, 293
BstBI TTCGAA 1 cut(s) 552
BstC8I GCNNGC 3 cut(s) 242, 301, 1037
BstDEI CTNAG 4 cut(s) 24, 435, 635, 708
BstF5I GGATG 2 cut(s) 652, 862
BstKTI GATC 2 cut(s) 7, 565
BstMAI GTCTC 1 cut(s) 575
BstMBI GATC 2 cut(s) 4, 562
BstMWI GCNNNNNNNGC 9 cut(s) 86, 287, 293, 296, 440, 636, 740, 905, 962
BstNI CCWGG 2 cut(s) 133, 366
BstNSI RCATGY 1 cut(s) 244
BstSCI CCNGG 2 cut(s) 131, 364
BstSFI CTRYAG 4 cut(s) 234, 294, 741, 828
BstSLI GKGCMC 1 cut(s) 492
BstV1I GCAGC 7 cut(s) 299, 308, 727, 814, 937, 940, 1019
BstX2I RGATCY 1 cut(s) 562
BstYI RGATCY 1 cut(s) 562
BsuI GTATCC 2 cut(s) 706, 766
BtsCI GGATG 2 cut(s) 652, 862
BtsI GCAGTG 1 cut(s) 465
BtsIMutI CAGTG 5 cut(s) 104, 314, 321, 465, 939
Cac8I GCNNGC 3 cut(s) 242, 301, 1037
CaiI CAGNNNCTG 2 cut(s) 293, 365
CciI TCATGA 1 cut(s) 222
Cfr10I RCCGGY 1 cut(s) 956
Cfr13I GGNCC 2 cut(s) 94, 362
CseI GACGC 1 cut(s) 1088
CsiI ACCWGGT 1 cut(s) 364
Csp6I GTAC 1 cut(s) 980
CviAII CATG 4 cut(s) 223, 241, 523, 764
CviQI GTAC 1 cut(s) 980
DdeI CTNAG 4 cut(s) 24, 435, 635, 708
DpnI GATC 2 cut(s) 6, 564
DpnII GATC 2 cut(s) 4, 562
DraI TTTAAA 1 cut(s) 889
DraIII CACNNNGTG 1 cut(s) 1066
Eam1104I CTCTTC 1 cut(s) 807
EarI CTCTTC 1 cut(s) 807
Ecl136II GAGCTC 1 cut(s) 770
Eco24I GRGCYC 1 cut(s) 772
Eco31I GGTCTC 1 cut(s) 575
Eco32I GATATC 1 cut(s) 505
Eco47I GGWCC 2 cut(s) 94, 362
Eco53kI GAGCTC 1 cut(s) 770
Eco57I CTGAAG 2 cut(s) 282, 644
Eco88I CYCGRG 1 cut(s) 485
EcoICRI GAGCTC 1 cut(s) 770
EcoO109I RGGNCCY 1 cut(s) 362
EcoRI GAATTC 1 cut(s) 153
EcoRII CCWGG 2 cut(s) 131, 364
EcoRV GATATC 1 cut(s) 505
EcoT22I ATGCAT 2 cut(s) 82, 728
EcoT38I GRGCYC 1 cut(s) 772
FaeI CATG 4 cut(s) 226, 244, 526, 767
FaqI GGGAC 2 cut(s) 773, 1091
FatI CATG 4 cut(s) 222, 240, 522, 763
FauNDI CATATG 1 cut(s) 607
FblI GTMKAC 1 cut(s) 928
Fnu4HI GCNGC 7 cut(s) 288, 297, 741, 828, 951, 954, 1033
FokI GGATG 2 cut(s) 659, 869
FriOI GRGCYC 1 cut(s) 772
Fsp4HI GCNGC 7 cut(s) 288, 297, 741, 828, 951, 954, 1033
FspBI CTAG 3 cut(s) 531, 615, 779
GluI GCNGC 7 cut(s) 288, 297, 741, 828, 951, 954, 1033
GsuI CTGGAG 1 cut(s) 756
HapII CCGG 1 cut(s) 957
HgaI GACGC 1 cut(s) 1088
Hin1II CATG 4 cut(s) 226, 244, 526, 767
HindIII AAGCTT 1 cut(s) 891
HinfI GANTC 4 cut(s) 103, 115, 406, 590
HpaII CCGG 1 cut(s) 957
HphI GGTGA 3 cut(s) 248, 519, 971
Hpy166II GTNNAC 5 cut(s) 67, 102, 321, 519, 929
Hpy188I TCNGA 5 cut(s) 25, 428, 480, 663, 687
Hpy188III TCNNGA 4 cut(s) 223, 508, 594, 854
Hpy8I GTNNAC 5 cut(s) 67, 102, 321, 519, 929
HpyAV CCTTC 3 cut(s) 257, 423, 637
HpyCH4III ACNGT 2 cut(s) 318, 325
HpyF10VI GCNNNNNNNGC 9 cut(s) 86, 287, 293, 296, 440, 636, 740, 905, 962
HpyF3I CTNAG 4 cut(s) 24, 435, 635, 708
Hsp92II CATG 4 cut(s) 226, 244, 526, 767
Kzo9I GATC 2 cut(s) 4, 562
LmnI GCTCC 7 cut(s) 235, 737, 767, 905, 996, 1087, 1099
Lsp1109I GCAGC 7 cut(s) 299, 308, 727, 814, 937, 940, 1019
LweI GCATC 4 cut(s) 89, 299, 611, 917
MabI ACCWGGT 1 cut(s) 364
MaeI CTAG 3 cut(s) 531, 615, 779
MaeIII GTNAC 4 cut(s) 412, 446, 525, 1055
MalI GATC 2 cut(s) 6, 564
MboI GATC 2 cut(s) 4, 562
MboII GAAGA 5 cut(s) 58, 70, 259, 356, 824
MfeI CAATTG 1 cut(s) 36
MflI RGATCY 1 cut(s) 562
MhlI GDGCHC 3 cut(s) 188, 492, 772
MlyI GAGTC 1 cut(s) 97
MmeI TCCRAC 1 cut(s) 406
Mph1103I ATGCAT 2 cut(s) 82, 728
MroXI GAANNNNTTC 1 cut(s) 548
MseI TTAA 3 cut(s) 108, 888, 1022
MslI CAYNNNNRTG 1 cut(s) 308
MspA1I CMGCKG 2 cut(s) 299, 639
MspCI CTTAAG 1 cut(s) 107
MspI CCGG 1 cut(s) 957
MspR9I CCNGG 2 cut(s) 133, 366
MunI CAATTG 1 cut(s) 36
MvaI CCWGG 2 cut(s) 133, 366
MwoI GCNNNNNNNGC 9 cut(s) 86, 287, 293, 296, 440, 636, 740, 905, 962
NdeI CATATG 1 cut(s) 607
NdeII GATC 2 cut(s) 4, 562
NlaIII CATG 4 cut(s) 226, 244, 526, 767
NmeAIII GCCGAG 1 cut(s) 751
NmuCI GTSAC 2 cut(s) 525, 1055
NsiI ATGCAT 2 cut(s) 82, 728
NspI RCATGY 1 cut(s) 244
NspV TTCGAA 1 cut(s) 552
PaeI GCATGC 1 cut(s) 244
PagI TCATGA 1 cut(s) 222
PdmI GAANNNNTTC 1 cut(s) 548
PfeI GAWTC 3 cut(s) 115, 406, 590
PflFI GACNNNGTC 1 cut(s) 316
PflMI CCANNNNNTGG 1 cut(s) 1066
PfoI TCCNGGA 1 cut(s) 131
PkrI GCNGC 7 cut(s) 289, 298, 742, 829, 952, 955, 1034
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PpuMI RGGWCCY 1 cut(s) 362
Psp124BI GAGCTC 1 cut(s) 772
Psp5II RGGWCCY 1 cut(s) 362
Psp6I CCWGG 2 cut(s) 131, 364
PspGI CCWGG 2 cut(s) 131, 364
PspPI GGNCC 2 cut(s) 94, 362
PspPPI RGGWCCY 1 cut(s) 362
PstI CTGCAG 3 cut(s) 298, 745, 832
PstNI CAGNNNCTG 2 cut(s) 293, 365
PsuI RGATCY 1 cut(s) 562
PsyI GACNNNGTC 1 cut(s) 316
PvuII CAGCTG 2 cut(s) 299, 639
RsaI GTAC 1 cut(s) 981
RsaNI GTAC 1 cut(s) 980
RseI CAYNNNNRTG 1 cut(s) 308
SacI GAGCTC 1 cut(s) 772
SaqAI TTAA 3 cut(s) 108, 888, 1022
SatI GCNGC 7 cut(s) 288, 297, 741, 828, 951, 954, 1033
Sau3AI GATC 2 cut(s) 4, 562
Sau96I GGNCC 2 cut(s) 94, 362
ScaI AGTACT 1 cut(s) 981
SchI GAGTC 1 cut(s) 97
ScrFI CCNGG 2 cut(s) 133, 366
SduI GDGCHC 3 cut(s) 188, 492, 772
SexAI ACCWGGT 1 cut(s) 364
SfaNI GCATC 4 cut(s) 89, 299, 611, 917
SfcI CTRYAG 4 cut(s) 234, 294, 741, 828
SfuI TTCGAA 1 cut(s) 552
SinI GGWCC 2 cut(s) 94, 362
SmiMI CAYNNNNRTG 1 cut(s) 308
SmlI CTYRAG 3 cut(s) 107, 181, 1004
SmoI CTYRAG 3 cut(s) 107, 181, 1004
SphI GCATGC 1 cut(s) 244
SsiI CCGC 1 cut(s) 279
SspMI CTAG 3 cut(s) 531, 615, 779
SstI GAGCTC 1 cut(s) 772
StyD4I CCNGG 2 cut(s) 131, 364
TaaI ACNGT 2 cut(s) 318, 325
TaqI TCGA 3 cut(s) 145, 151, 552
TatI WGTACW 1 cut(s) 979
TfiI GAWTC 3 cut(s) 115, 406, 590
Tru1I TTAA 3 cut(s) 108, 888, 1022
Tru9I TTAA 3 cut(s) 108, 888, 1022
TscAI CASTG 5 cut(s) 104, 321, 328, 472, 939
TseFI GTSAC 2 cut(s) 525, 1055
TseI GCWGC 7 cut(s) 287, 296, 740, 827, 950, 953, 1032
Tsp45I GTSAC 2 cut(s) 525, 1055
TspDTI ATGAA 1 cut(s) 45
TspGWI ACGGA 1 cut(s) 983
TspRI CASTG 5 cut(s) 104, 321, 328, 472, 939
Tth111I GACNNNGTC 1 cut(s) 316
Van91I CCANNNNNTGG 1 cut(s) 1066
Vha464I CTTAAG 1 cut(s) 107
VpaK11BI GGWCC 2 cut(s) 94, 362
XapI RAATTY 4 cut(s) 49, 153, 556, 840
XceI RCATGY 1 cut(s) 244
XmiI GTMKAC 1 cut(s) 928
XmnI GAANNNNTTC 1 cut(s) 548
XspI CTAG 3 cut(s) 531, 615, 779
ZrmI AGTACT 1 cut(s) 981
Zsp2I ATGCAT 2 cut(s) 82, 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.