Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002723

Physical Location & Seq

Genomic Coordinates Forward (+)

27445223 .. 27448075

Gene Structure 2853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g26180.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGTTTATGACTACTATGCATCAGGTGCAGAAGATGAATGGACTCTCAAGGAGAACAAACACGCATTTTCGCGGATTTTATTTCGACCTCGTATTCTTGTAGATGTAAGCAAGATAGACTTGAGAACAACTGTTTTGGGCTTCAATATTTCGATGCCAATTATGATTGCGCCCACAGCCATGCAGAAGATGGCTCATCCTGAAGGAGAGTTTGCAACGGCAAGAGCAGCATCTGCAGCTGACACAATTATGACACTGTCGTCTTGGTCCACTTCCAGTATCGAAGAGGTTGCGTCAACAGGACCTGGCATTCGCTTTTTCCAACTCTATGTGTACAAAGACAGAAATATGGTTGCACAGCTTGTAAAAAGAGCCGAGAGGGCCGGTTTTAAGGCAATAGCTCTTACTGTGGACACTCCGAGGCTTGGACGCCGAGAGGCTGATATTAAGAACAGATTTGTATTGCCACCAAACTTAACATTGAAGAACTTTGAGGATTTGGTTCGTGGAAAGATCGATAAGACCAATGATTCTGGACTTGCATCATATGTTGCTGGACAAACTGACCAGTCTCTCAGCTGGAAGGATATACAGTGGCTTCAGACAATCACCAAATTACCAATTCTGGTTAAGGGTGTAATTACTGCCGAGGATGCACGACTAGCCATACAGTATGGAGCTGCAGGAATTATCGTCTCCAACCATGGAGCTCGTCAACTTGATTATCTCCCTGCAACTATTATGGCTCTGGAAGAGGTCGTTAAAGCTGCACGAGGCCAAATTCCTGTGTTTTTGGATGGTGGAGTAAGGCGCGGAACGGATGTTTTTAAAGCTCTGGCTCTTGGTGCATCCGGCATATTTATTGGTAGACCGGTGGTGTTCGCACTAGCGGCAGATGGCGAGGCTGGTGTAAGGAAAGTTCTTCAAATGCTTCGTGACGAATTTGAACTAACCATGGCATTAAGTGGTTGCCGTTCGCTGAAGGAGATCACACGCAACCACATTGTAACTGAATGGGATCGTCCTCGTGTTGCACCTAGATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009853 GO:0009987 GO:0010033 GO:0010109 GO:0016020 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0022626 GO:0030054 GO:0031323 GO:0032991 GO:0035821 GO:0042221 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050665 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0055044 GO:0055114 GO:0065007 GO:0072593 GO:0098542 GO:1903409 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

349

Amino Acids

38.46

Weight (kDa)

9.4

Isoelectric Point (pI)

31.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18360 AT4G18360 AT4G18360 AT4G18360
fragaria_vesca	FvH4_3g05330 FvH4_3g05330 FvH4_3g05330 FvH4_3g05330
malus_domestica	MD05G1281900.v1.1 MD10G1260600.v1.1
prunus_persica	Prupe.4G082600_v2.0.a1 Prupe.4G082600_v2.0.a1 Prupe.4G082600_v2.0.a1 Prupe.4G082600_v2.0.a1 Prupe.4G082600_v2.0.a1
pyrus_communis	pycom05g26180 pycom10g21660
rosa_chinensis	RchiOBHm_Chr5g0014411 RchiOBHm_Chr6g0278091 RchiOBHm_Chr6g0278121 RchiOBHm_Chr6g0278131
rosa_laevigata	RLG00000013240 RLG00000032106
rosa_multiflora	Rmu_sc0000791.1_g000023 Rmu_sc0000791.1_g000034 Rmu_sc0000791.1_g000050 Rmu_ssc0000422.1_g000039
rosa_roxburghii	Rroxscaffold_1G00062170 Rroxscaffold_7G00190510 Rroxscaffold_7G00190520
rosa_rugosa	Rorug05G0017900 Rorug06G0114800
rosa_samantha	Rh5AG112700 Rh6BG228600 Rh6CG231000
rosa_wichuraiana	Rw5G009780 Rw6G019610 Rw6G019640 Rw6G019650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1045
AasI	GACNNNNNNGTC	1 cut(s)	259
AccI	GTMKAC	1 cut(s)	868
AccII	CGCG	2 cut(s)	73, 813
AciI	CCGC	3 cut(s)	73, 813, 890
AclWI	GGATC	1 cut(s)	1026
AcsI	RAATTY	2 cut(s)	780, 941
AcuI	CTGAAG	3 cut(s)	222, 584, 1001
AcyI	GRCGYC	1 cut(s)	430
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	1 cut(s)	425
AgeI	ACCGGT	1 cut(s)	871
AgsI	TTSAA	4 cut(s)	145, 484, 926, 947
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	8 cut(s)	239, 361, 401, 579, 680, 710, 767, 833
AluI	AGCT	8 cut(s)	239, 361, 401, 579, 680, 710, 767, 833
Alw21I	GWGCWC	1 cut(s)	712
Alw26I	GTCTC	2 cut(s)	576, 700
AlwI	GGATC	1 cut(s)	1026
AlwNI	CAGNNNCTG	2 cut(s)	233, 305
AoxI	GGCC	2 cut(s)	381, 775
ApeKI	GCWGC	4 cut(s)	227, 236, 680, 767
ApoI	RAATTY	2 cut(s)	780, 941
ArsI	GACNNNNNNTTYG	2 cut(s)	294, 326
AsiGI	ACCGGT	1 cut(s)	871
AspLEI	GCGC	2 cut(s)	172, 813
AspS9I	GGNCC	3 cut(s)	267, 302, 381
AsuHPI	GGTGA	1 cut(s)	601
AvaII	GGWCC	2 cut(s)	267, 302
BanII	GRGCYC	1 cut(s)	712
BauI	CACGAG	2 cut(s)	771, 1026
Bbv12I	GWGCWC	1 cut(s)	712
BbvI	GCAGC	4 cut(s)	239, 248, 667, 754
BccI	CCATC	3 cut(s)	184, 791, 890
BceAI	ACGGC	2 cut(s)	234, 957
BcgI	CGANNNNNNTGC	2 cut(s)	272, 306
BciT130I	CCWGG	1 cut(s)	306
BcoDI	GTCTC	2 cut(s)	576, 700
BfaI	CTAG	3 cut(s)	662, 887, 1038
BfmI	CTRYAG	2 cut(s)	234, 681
BglI	GCCNNNNNGGC	1 cut(s)	380
BisI	GCNGC	5 cut(s)	228, 237, 681, 768, 891
BlsI	GCNGC	5 cut(s)	229, 238, 682, 769, 892
Bme1390I	CCNGG	1 cut(s)	306
Bme18I	GGWCC	2 cut(s)	267, 302
BmgT120I	GGNCC	3 cut(s)	267, 302, 381
BmrFI	CCNGG	1 cut(s)	306
BmsI	GCATC	6 cut(s)	29, 144, 239, 551, 643, 857
BpuEI	CTTGAG	2 cut(s)	32, 142
Bsa29I	ATCGAT	1 cut(s)	516
BsaHI	GRCGYC	1 cut(s)	430
BsaJI	CCNNGG	4 cut(s)	419, 648, 703, 954
BsaWI	WCCGGW	1 cut(s)	871
Bsc4I	CCNNNNNNNGG	1 cut(s)	425
Bse118I	RCCGGY	2 cut(s)	383, 871
Bse1I	ACTGG	2 cut(s)	276, 568
BseBI	CCWGG	1 cut(s)	306
BseCI	ATCGAT	1 cut(s)	516
BseDI	CCNNGG	4 cut(s)	419, 648, 703, 954
BseGI	GGATG	5 cut(s)	196, 658, 802, 826, 848
BseLI	CCNNNNNNNGG	1 cut(s)	425
BseMII	CTCAG	1 cut(s)	589
BseNI	ACTGG	2 cut(s)	276, 568
BseXI	GCAGC	4 cut(s)	239, 248, 667, 754
BsgI	GTGCAG	2 cut(s)	48, 753
Bsh1236I	CGCG	2 cut(s)	73, 813
BshFI	GGCC	2 cut(s)	383, 777
BshTI	ACCGGT	1 cut(s)	871
BshVI	ATCGAT	1 cut(s)	516
BsiHKAI	GWGCWC	1 cut(s)	712
BsiSI	CCGG	3 cut(s)	384, 852, 872
BslI	CCNNNNNNNGG	1 cut(s)	425
BsmAI	GTCTC	2 cut(s)	576, 700
BsmBI	CGTCTC	1 cut(s)	700
BsmI	GAATGC	1 cut(s)	309
BsnI	GGCC	2 cut(s)	383, 777
Bsp1286I	GDGCHC	1 cut(s)	712
Bsp1407I	TGTACA	1 cut(s)	333
Bsp143I	GATC	3 cut(s)	513, 987, 1018
Bsp19I	CCATGG	2 cut(s)	703, 954
BspACI	CCGC	3 cut(s)	73, 813, 890
BspANI	GGCC	2 cut(s)	383, 777
BspCNI	CTCAG	1 cut(s)	588
BspDI	ATCGAT	1 cut(s)	516
BspFNI	CGCG	2 cut(s)	73, 813
BspMAI	CTGCAG	2 cut(s)	238, 685
BspPI	GGATC	1 cut(s)	1026
BsrFI	RCCGGY	2 cut(s)	383, 871
BsrGI	TGTACA	1 cut(s)	333
BsrI	ACTGG	2 cut(s)	276, 568
BssAI	RCCGGY	2 cut(s)	383, 871
BssECI	CCNNGG	4 cut(s)	419, 648, 703, 954
BssMI	GATC	3 cut(s)	513, 987, 1018
BssNI	GRCGYC	1 cut(s)	430
BssSI	CACGAG	2 cut(s)	771, 1026
BssT1I	CCWWGG	2 cut(s)	703, 954
Bst2BI	CACGAG	2 cut(s)	771, 1026
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	5 cut(s)	133, 258, 409, 594, 672
Bst6I	CTCTTC	2 cut(s)	279, 747
BstACI	GRCGYC	1 cut(s)	430
BstAPI	GCANNNNNTGC	2 cut(s)	26, 233
BstAUI	TGTACA	1 cut(s)	333
BstDEI	CTNAG	1 cut(s)	575
BstDSI	CCRYGG	2 cut(s)	703, 954
BstF5I	GGATG	5 cut(s)	196, 658, 802, 826, 848
BstFNI	CGCG	2 cut(s)	73, 813
BstHHI	GCGC	2 cut(s)	172, 813
BstKTI	GATC	3 cut(s)	516, 990, 1021
BstMAI	GTCTC	2 cut(s)	576, 700
BstMBI	GATC	3 cut(s)	513, 987, 1018
BstNI	CCWGG	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	304
BstSFI	CTRYAG	2 cut(s)	234, 681
BstUI	CGCG	2 cut(s)	73, 813
BstV1I	GCAGC	4 cut(s)	239, 248, 667, 754
Bsu15I	ATCGAT	1 cut(s)	516
BsuRI	GGCC	2 cut(s)	383, 777
BsuTUI	ATCGAT	1 cut(s)	516
BtgI	CCRYGG	2 cut(s)	703, 954
BtsCI	GGATG	5 cut(s)	196, 658, 802, 826, 848
BtsIMutI	CAGTG	2 cut(s)	254, 599
CaiI	CAGNNNCTG	2 cut(s)	233, 305
CfoI	GCGC	2 cut(s)	172, 813
Cfr10I	RCCGGY	2 cut(s)	383, 871
Cfr13I	GGNCC	3 cut(s)	267, 302, 381
ClaI	ATCGAT	1 cut(s)	516
CseI	GACGC	2 cut(s)	282, 438
Csp6I	GTAC	1 cut(s)	334
CspAI	ACCGGT	1 cut(s)	871
CviAII	CATG	3 cut(s)	181, 704, 955
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	1 cut(s)	575
DpnI	GATC	3 cut(s)	515, 989, 1020
DpnII	GATC	3 cut(s)	513, 987, 1018
DraI	TTTAAA	1 cut(s)	829
DrdI	GACNNNNNNGTC	1 cut(s)	259
DseDI	GACNNNNNNGTC	1 cut(s)	259
Eam1104I	CTCTTC	2 cut(s)	279, 747
EarI	CTCTTC	2 cut(s)	279, 747
Ecl136II	GAGCTC	1 cut(s)	710
Eco130I	CCWWGG	2 cut(s)	703, 954
Eco24I	GRGCYC	1 cut(s)	712
Eco47I	GGWCC	2 cut(s)	267, 302
Eco53kI	GAGCTC	1 cut(s)	710
Eco57I	CTGAAG	3 cut(s)	222, 584, 1001
EcoICRI	GAGCTC	1 cut(s)	710
EcoO109I	RGGNCCY	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	304
EcoT14I	CCWWGG	2 cut(s)	703, 954
EcoT22I	ATGCAT	1 cut(s)	22
EcoT38I	GRGCYC	1 cut(s)	712
ErhI	CCWWGG	2 cut(s)	703, 954
Esp3I	CGTCTC	1 cut(s)	700
FaeI	CATG	3 cut(s)	184, 707, 958
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FatI	CATG	3 cut(s)	180, 703, 954
FauNDI	CATATG	1 cut(s)	547
FblI	GTMKAC	1 cut(s)	868
Fnu4HI	GCNGC	5 cut(s)	228, 237, 681, 768, 891
FokI	GGATG	5 cut(s)	183, 665, 809, 833, 835
FriOI	GRGCYC	1 cut(s)	712
Fsp4HI	GCNGC	5 cut(s)	228, 237, 681, 768, 891
FspBI	CTAG	3 cut(s)	662, 887, 1038
GlaI	GCGC	2 cut(s)	171, 812
GluI	GCNGC	5 cut(s)	228, 237, 681, 768, 891
HaeIII	GGCC	2 cut(s)	383, 777
HapII	CCGG	3 cut(s)	384, 852, 872
HgaI	GACGC	2 cut(s)	282, 438
HhaI	GCGC	2 cut(s)	172, 813
Hin1I	GRCGYC	1 cut(s)	430
Hin1II	CATG	3 cut(s)	184, 707, 958
Hin6I	GCGC	2 cut(s)	170, 811
HinP1I	GCGC	2 cut(s)	170, 811
HincII	GTYRAC	2 cut(s)	297, 716
HindII	GTYRAC	2 cut(s)	297, 716
HinfI	GANTC	2 cut(s)	43, 530
HpaII	CCGG	3 cut(s)	384, 852, 872
HphI	GGTGA	1 cut(s)	601
Hpy166II	GTNNAC	6 cut(s)	270, 297, 334, 412, 716, 869
Hpy188I	TCNGA	2 cut(s)	420, 603
Hpy188III	TCNNGA	4 cut(s)	200, 534, 749, 935
Hpy8I	GTNNAC	6 cut(s)	270, 297, 334, 412, 716, 869
HpyAV	CCTTC	3 cut(s)	197, 577, 976
HpyCH4III	ACNGT	5 cut(s)	133, 258, 409, 594, 672
HpyF3I	CTNAG	1 cut(s)	575
Hsp92I	GRCGYC	1 cut(s)	430
Hsp92II	CATG	3 cut(s)	184, 707, 958
HspAI	GCGC	2 cut(s)	170, 811
Kzo9I	GATC	3 cut(s)	513, 987, 1018
LmnI	GCTCC	2 cut(s)	677, 707
Lsp1109I	GCAGC	4 cut(s)	239, 248, 667, 754
LweI	GCATC	6 cut(s)	29, 144, 239, 551, 643, 857
MaeI	CTAG	3 cut(s)	662, 887, 1038
MaeIII	GTNAC	2 cut(s)	935, 1006
MalI	GATC	3 cut(s)	515, 989, 1020
MboI	GATC	3 cut(s)	513, 987, 1018
MboII	GAAGA	6 cut(s)	44, 199, 296, 496, 764, 914
MhlI	GDGCHC	1 cut(s)	712
MluCI	AATT	8 cut(s)	159, 246, 614, 621, 639, 687, 780, 941
MlyI	GAGTC	1 cut(s)	37
MmeI	TCCRAC	2 cut(s)	346, 723
Mph1103I	ATGCAT	1 cut(s)	22
MseI	TTAA	7 cut(s)	390, 447, 476, 630, 762, 828, 962
MslI	CAYNNNNRTG	2 cut(s)	179, 248
MspA1I	CMGCKG	2 cut(s)	239, 579
MspI	CCGG	3 cut(s)	384, 852, 872
MspR9I	CCNGG	1 cut(s)	306
Mva1269I	GAATGC	1 cut(s)	309
MvaI	CCWGG	1 cut(s)	306
MvnI	CGCG	2 cut(s)	73, 813
NcoI	CCATGG	2 cut(s)	703, 954
NdeI	CATATG	1 cut(s)	547
NdeII	GATC	3 cut(s)	513, 987, 1018
NlaIII	CATG	3 cut(s)	184, 707, 958
NmeAIII	GCCGAG	3 cut(s)	400, 458, 673
NmuCI	GTSAC	1 cut(s)	935
NsiI	ATGCAT	1 cut(s)	22
PctI	GAATGC	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	530
PflFI	GACNNNGTC	1 cut(s)	256
PinAI	ACCGGT	1 cut(s)	871
PkrI	GCNGC	5 cut(s)	229, 238, 682, 769, 892
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PpuMI	RGGWCCY	1 cut(s)	302
PsiI	TTATAA	1 cut(s)	1045
Psp124BI	GAGCTC	1 cut(s)	712
Psp5II	RGGWCCY	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspPI	GGNCC	3 cut(s)	267, 302, 381
PspPPI	RGGWCCY	1 cut(s)	302
PsrI	GAACNNNNNNTAC	2 cut(s)	903, 935
PstI	CTGCAG	2 cut(s)	238, 685
PstNI	CAGNNNCTG	2 cut(s)	233, 305
PsyI	GACNNNGTC	1 cut(s)	256
PvuII	CAGCTG	2 cut(s)	239, 579
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
RseI	CAYNNNNRTG	2 cut(s)	179, 248
SacI	GAGCTC	1 cut(s)	712
SaqAI	TTAA	7 cut(s)	390, 447, 476, 630, 762, 828, 962
SatI	GCNGC	5 cut(s)	228, 237, 681, 768, 891
Sau3AI	GATC	3 cut(s)	513, 987, 1018
Sau96I	GGNCC	3 cut(s)	267, 302, 381
SchI	GAGTC	1 cut(s)	37
ScrFI	CCNGG	1 cut(s)	306
SduI	GDGCHC	1 cut(s)	712
SfaNI	GCATC	6 cut(s)	29, 144, 239, 551, 643, 857
SfcI	CTRYAG	2 cut(s)	234, 681
SinI	GGWCC	2 cut(s)	267, 302
SmiMI	CAYNNNNRTG	2 cut(s)	179, 248
SmlI	CTYRAG	2 cut(s)	47, 121
SmoI	CTYRAG	2 cut(s)	47, 121
Sse9I	AATT	8 cut(s)	159, 246, 614, 621, 639, 687, 780, 941
SsiI	CCGC	3 cut(s)	73, 813, 890
SspI	AATATT	1 cut(s)	148
SspMI	CTAG	3 cut(s)	662, 887, 1038
SstI	GAGCTC	1 cut(s)	712
StyD4I	CCNGG	1 cut(s)	304
StyI	CCWWGG	2 cut(s)	703, 954
TaaI	ACNGT	5 cut(s)	133, 258, 409, 594, 672
TaqI	TCGA	4 cut(s)	85, 152, 282, 516
TasI	AATT	8 cut(s)	159, 246, 614, 621, 639, 687, 780, 941
TatI	WGTACW	1 cut(s)	333
TauI	GCSGC	1 cut(s)	893
TfiI	GAWTC	1 cut(s)	530
Tru1I	TTAA	7 cut(s)	390, 447, 476, 630, 762, 828, 962
Tru9I	TTAA	7 cut(s)	390, 447, 476, 630, 762, 828, 962
TscAI	CASTG	2 cut(s)	261, 599
TseFI	GTSAC	1 cut(s)	935
TseI	GCWGC	4 cut(s)	227, 236, 680, 767
Tsp45I	GTSAC	1 cut(s)	935
TspDTI	ATGAA	1 cut(s)	51
TspGWI	ACGGA	1 cut(s)	833
TspRI	CASTG	2 cut(s)	261, 599
Tth111I	GACNNNGTC	1 cut(s)	256
VpaK11BI	GGWCC	2 cut(s)	267, 302
XapI	RAATTY	2 cut(s)	780, 941
XcmI	CCANNNNNNNNNTGG	1 cut(s)	187
XmiI	GTMKAC	1 cut(s)	868
XspI	CTAG	3 cut(s)	662, 887, 1038
Zsp2I	ATGCAT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.