MD05G1281900.v1.1

Peroxisomal (S)-2-hydroxy-acid oxidase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
41570905 .. 41575061
4157 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1281900.v1.1.491

Sequence Viewer

Length: 1104 bp
ATGGAGATAACCAATGTTTCTGAGTATGAAGCAATTGCGAAGGAGAAACTGCCAAAGATGGTTTATGACTACTATGCATCAGGTGCAGAAGATGAATGGACTCTCAAGGAGAACAAACGTGCATTTTCGCGGATTTTATTTCGACCTCGTATTCTTGTAGATGTAAGCAAGATAGACTTGAGAACAACTGTTTTGGGCTTCAATATTTCGATGCCAATTATGATTGCGCCTACAGCCATGCAGAAGATGGCTCATCCTGAAGGAGAGTTTGCAACGGCAAGAGCAGCGTCTGCAGCTGACACAATTATGACACTGTCGTCTTGGTCCACTTCCAGTGTCGAAGAGGTTGCCTCAACAGGACCTGGCATTCGCTTTTTCCAACTCTATGTGTACAAAGACAGAAATATGGTTGCACAGCTTGTAAAAAGAGCTGAGAGGGCCGGTTTTAAGGCAATAGTTCTTACTGTGGACACTCCGAGGCTTGGACGCCGAGAGGCTGATATTAAGAACAGATTTGTATTGCCACCAAACTTAACATTGAAGAACTTTGAGGATTTGGTTCTCGGAAAGATGGATAAGACCAATGATTCTGGACTTGCATCATATGTTGCTCGACAAACTGACCAGTCTCTCAGCTGGAAGGATATACAGTGGCTTCAGACAATCACCAAATTACCAATTCTTGTTAAGGGTGTAATTACTGCTGAGGATGCACGACTAGCCATACAATATGGAGCTGCAGGAATTATCGTCTCCAACCATGGAGCTCGTCAACTTGATTATCTCCCTGCAACTATTATGGCTCTGGAAGAGGTCGTCAAAGCTGCACAAGGCCAAATTCCTGTGTTTATGGATGGTGGAGTAAGGCGAGGAACAGATGTTTTTAAAGCTCTGGCTCTTGGTGCATCCGGCGTATTTATAGGTAGACCGGTGGTGTTCTCATTAGCGGCAGATGGCGAGGCTGGTGTAAGGAAAGTTCTTCAAATGCTTCGTGACGAATTTGAGCTAACCATGGCATTAAGTGGTTGCCGTTCGCTGAAGGAGATCACACGCAACCACATTGTAACTGAATGGGATCGTCCTCGTGTTGCACCTAGATTATAA

Protein Analysis

368

Amino Acids

40.73

Weight (kDa)

9.23

Isoelectric Point (pI)

33.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMN_dh PF01070 13 - 355 4.2e-142 FMN-dependent dehydrogenase
NMO PF03060 228 - 362 4.1e-07 Nitronate monooxygenase
IMPDH PF00478 265 - 311 3.2e-06 IMP dehydrogenase / GMP reductase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1102
AasI GACNNNNNNGTC 1 cut(s) 316
AccI GTMKAC 1 cut(s) 925
AccII CGCG 1 cut(s) 130
AciI CCGC 2 cut(s) 130, 947
AclWI GGATC 1 cut(s) 1083
AcsI RAATTY 2 cut(s) 837, 998
AcuI CTGAAG 3 cut(s) 279, 641, 1058
AcyI GRCGYC 1 cut(s) 487
AfaI GTAC 1 cut(s) 392
AfiI CCNNNNNNNGG 1 cut(s) 482
AgeI ACCGGT 1 cut(s) 928
AgsI TTSAA 3 cut(s) 202, 541, 983
AjnI CCWGG 1 cut(s) 361
AluBI AGCT 9 cut(s) 296, 418, 431, 636, 737, 767, 824, 890, 1006
AluI AGCT 9 cut(s) 296, 418, 431, 636, 737, 767, 824, 890, 1006
Alw21I GWGCWC 1 cut(s) 769
Alw26I GTCTC 2 cut(s) 633, 757
AlwI GGATC 1 cut(s) 1083
AlwNI CAGNNNCTG 2 cut(s) 290, 362
AoxI GGCC 2 cut(s) 438, 832
ApeKI GCWGC 4 cut(s) 284, 293, 737, 824
ApoI RAATTY 2 cut(s) 837, 998
ArsI GACNNNNNNTTYG 2 cut(s) 351, 383
AsiGI ACCGGT 1 cut(s) 928
AspLEI GCGC 1 cut(s) 229
AspS9I GGNCC 3 cut(s) 324, 359, 438
AsuHPI GGTGA 1 cut(s) 658
AvaII GGWCC 2 cut(s) 324, 359
BanII GRGCYC 1 cut(s) 769
BauI CACGAG 1 cut(s) 1083
Bbv12I GWGCWC 1 cut(s) 769
BbvCI CCTCAGC 1 cut(s) 705
BbvI GCAGC 4 cut(s) 296, 305, 724, 811
BccI CCATC 5 cut(s) 52, 241, 565, 848, 947
BceAI ACGGC 2 cut(s) 291, 1014
BcgI CGANNNNNNTGC 2 cut(s) 329, 363
BciT130I CCWGG 1 cut(s) 363
BcoDI GTCTC 2 cut(s) 633, 757
BfaI CTAG 2 cut(s) 719, 1095
BfmI CTRYAG 3 cut(s) 231, 291, 738
BisI GCNGC 5 cut(s) 285, 294, 738, 825, 948
BlsI GCNGC 5 cut(s) 286, 295, 739, 826, 949
Bme1390I CCNGG 1 cut(s) 363
Bme18I GGWCC 2 cut(s) 324, 359
BmgT120I GGNCC 3 cut(s) 324, 359, 438
BmrFI CCNGG 1 cut(s) 363
BmsI GCATC 5 cut(s) 86, 201, 608, 700, 914
BplI GAGNNNNNCTC 2 cut(s) 335, 367
Bpu10I CCTNAGC 1 cut(s) 705
BpuEI CTTGAG 2 cut(s) 89, 199
BsaHI GRCGYC 1 cut(s) 487
BsaJI CCNNGG 3 cut(s) 476, 760, 1011
BsaWI WCCGGW 1 cut(s) 928
Bsc4I CCNNNNNNNGG 1 cut(s) 482
Bse118I RCCGGY 2 cut(s) 440, 928
Bse1I ACTGG 2 cut(s) 333, 625
BseBI CCWGG 1 cut(s) 363
BseDI CCNNGG 3 cut(s) 476, 760, 1011
BseGI GGATG 4 cut(s) 253, 715, 859, 905
BseLI CCNNNNNNNGG 1 cut(s) 482
BseMII CTCAG 4 cut(s) 12, 423, 646, 696
BseNI ACTGG 2 cut(s) 333, 625
BseXI GCAGC 4 cut(s) 296, 305, 724, 811
BsgI GTGCAG 2 cut(s) 105, 810
Bsh1236I CGCG 1 cut(s) 130
BshFI GGCC 2 cut(s) 440, 834
BshTI ACCGGT 1 cut(s) 928
BsiHKAI GWGCWC 1 cut(s) 769
BsiSI CCGG 3 cut(s) 441, 909, 929
BslI CCNNNNNNNGG 1 cut(s) 482
BsmAI GTCTC 2 cut(s) 633, 757
BsmBI CGTCTC 1 cut(s) 757
BsmI GAATGC 1 cut(s) 366
BsnI GGCC 2 cut(s) 440, 834
Bsp1286I GDGCHC 1 cut(s) 769
Bsp1407I TGTACA 1 cut(s) 390
Bsp143I GATC 2 cut(s) 1044, 1075
Bsp19I CCATGG 2 cut(s) 760, 1011
BspACI CCGC 2 cut(s) 130, 947
BspANI GGCC 2 cut(s) 440, 834
BspCNI CTCAG 4 cut(s) 13, 424, 645, 697
BspFNI CGCG 1 cut(s) 130
BspMAI CTGCAG 2 cut(s) 295, 742
BspPI GGATC 1 cut(s) 1083
BsrFI RCCGGY 2 cut(s) 440, 928
BsrGI TGTACA 1 cut(s) 390
BsrI ACTGG 2 cut(s) 333, 625
BssAI RCCGGY 2 cut(s) 440, 928
BssECI CCNNGG 3 cut(s) 476, 760, 1011
BssMI GATC 2 cut(s) 1044, 1075
BssNI GRCGYC 1 cut(s) 487
BssSI CACGAG 1 cut(s) 1083
BssT1I CCWWGG 2 cut(s) 760, 1011
Bst2BI CACGAG 1 cut(s) 1083
Bst2UI CCWGG 1 cut(s) 363
Bst4CI ACNGT 4 cut(s) 190, 315, 466, 651
Bst6I CTCTTC 2 cut(s) 336, 804
BstACI GRCGYC 1 cut(s) 487
BstAPI GCANNNNNTGC 2 cut(s) 83, 290
BstAUI TGTACA 1 cut(s) 390
BstDEI CTNAG 4 cut(s) 21, 432, 632, 705
BstDSI CCRYGG 2 cut(s) 760, 1011
BstF5I GGATG 4 cut(s) 253, 715, 859, 905
BstFNI CGCG 1 cut(s) 130
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 2 cut(s) 1047, 1078
BstMAI GTCTC 2 cut(s) 633, 757
BstMBI GATC 2 cut(s) 1044, 1075
BstMWI GCNNNNNNNGC 9 cut(s) 83, 233, 284, 290, 293, 437, 710, 719, 902
BstNI CCWGG 1 cut(s) 363
BstSCI CCNGG 1 cut(s) 361
BstSFI CTRYAG 3 cut(s) 231, 291, 738
BstUI CGCG 1 cut(s) 130
BstV1I GCAGC 4 cut(s) 296, 305, 724, 811
BsuRI GGCC 2 cut(s) 440, 834
BtgI CCRYGG 2 cut(s) 760, 1011
BtsCI GGATG 4 cut(s) 253, 715, 859, 905
BtsIMutI CAGTG 3 cut(s) 311, 340, 656
CaiI CAGNNNCTG 2 cut(s) 290, 362
CfoI GCGC 1 cut(s) 229
Cfr10I RCCGGY 2 cut(s) 440, 928
Cfr13I GGNCC 3 cut(s) 324, 359, 438
CseI GACGC 2 cut(s) 276, 495
Csp6I GTAC 1 cut(s) 391
CspAI ACCGGT 1 cut(s) 928
CviAII CATG 3 cut(s) 238, 761, 1012
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 4 cut(s) 21, 432, 632, 705
DpnI GATC 2 cut(s) 1046, 1077
DpnII GATC 2 cut(s) 1044, 1075
DraI TTTAAA 1 cut(s) 886
DrdI GACNNNNNNGTC 1 cut(s) 316
DseDI GACNNNNNNGTC 1 cut(s) 316
Eam1104I CTCTTC 2 cut(s) 336, 804
EarI CTCTTC 2 cut(s) 336, 804
Ecl136II GAGCTC 1 cut(s) 767
Eco130I CCWWGG 2 cut(s) 760, 1011
Eco24I GRGCYC 1 cut(s) 769
Eco47I GGWCC 2 cut(s) 324, 359
Eco53kI GAGCTC 1 cut(s) 767
Eco57I CTGAAG 3 cut(s) 279, 641, 1058
EcoICRI GAGCTC 1 cut(s) 767
EcoO109I RGGNCCY 1 cut(s) 359
EcoRII CCWGG 1 cut(s) 361
EcoT14I CCWWGG 2 cut(s) 760, 1011
EcoT22I ATGCAT 1 cut(s) 79
EcoT38I GRGCYC 1 cut(s) 769
ErhI CCWWGG 2 cut(s) 760, 1011
Esp3I CGTCTC 1 cut(s) 757
FaeI CATG 3 cut(s) 241, 764, 1015
FalI AAGNNNNNCTT 2 cut(s) 161, 193
FatI CATG 3 cut(s) 237, 760, 1011
FauNDI CATATG 1 cut(s) 604
FblI GTMKAC 1 cut(s) 925
Fnu4HI GCNGC 5 cut(s) 285, 294, 738, 825, 948
FokI GGATG 4 cut(s) 240, 722, 866, 892
FriOI GRGCYC 1 cut(s) 769
Fsp4HI GCNGC 5 cut(s) 285, 294, 738, 825, 948
FspBI CTAG 2 cut(s) 719, 1095
GlaI GCGC 1 cut(s) 228
GluI GCNGC 5 cut(s) 285, 294, 738, 825, 948
HaeIII GGCC 2 cut(s) 440, 834
HapII CCGG 3 cut(s) 441, 909, 929
HgaI GACGC 2 cut(s) 276, 495
HhaI GCGC 1 cut(s) 229
Hin1I GRCGYC 1 cut(s) 487
Hin1II CATG 3 cut(s) 241, 764, 1015
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HincII GTYRAC 1 cut(s) 773
HindII GTYRAC 1 cut(s) 773
HinfI GANTC 2 cut(s) 100, 587
HpaII CCGG 3 cut(s) 441, 909, 929
HphI GGTGA 1 cut(s) 658
Hpy166II GTNNAC 5 cut(s) 327, 391, 469, 773, 926
Hpy188I TCNGA 4 cut(s) 22, 477, 566, 660
Hpy188III TCNNGA 4 cut(s) 257, 591, 806, 992
Hpy8I GTNNAC 5 cut(s) 327, 391, 469, 773, 926
HpyAV CCTTC 4 cut(s) 34, 254, 634, 1033
HpyCH4III ACNGT 4 cut(s) 190, 315, 466, 651
HpyCH4IV ACGT 1 cut(s) 118
HpyF10VI GCNNNNNNNGC 9 cut(s) 83, 233, 284, 290, 293, 437, 710, 719, 902
HpyF3I CTNAG 4 cut(s) 21, 432, 632, 705
HpySE526I ACGT 1 cut(s) 118
Hsp92I GRCGYC 1 cut(s) 487
Hsp92II CATG 3 cut(s) 241, 764, 1015
HspAI GCGC 1 cut(s) 227
Kzo9I GATC 2 cut(s) 1044, 1075
LmnI GCTCC 2 cut(s) 734, 764
Lsp1109I GCAGC 4 cut(s) 296, 305, 724, 811
LweI GCATC 5 cut(s) 86, 201, 608, 700, 914
MaeI CTAG 2 cut(s) 719, 1095
MaeII ACGT 1 cut(s) 118
MaeIII GTNAC 2 cut(s) 992, 1063
MalI GATC 2 cut(s) 1046, 1077
MboI GATC 2 cut(s) 1044, 1075
MboII GAAGA 6 cut(s) 101, 256, 353, 553, 821, 971
MfeI CAATTG 1 cut(s) 33
MhlI GDGCHC 1 cut(s) 769
MluCI AATT 9 cut(s) 33, 216, 303, 671, 678, 696, 744, 837, 998
MlyI GAGTC 1 cut(s) 94
MmeI TCCRAC 2 cut(s) 403, 780
Mph1103I ATGCAT 1 cut(s) 79
MseI TTAA 6 cut(s) 447, 504, 533, 687, 885, 1019
MslI CAYNNNNRTG 1 cut(s) 305
MspA1I CMGCKG 2 cut(s) 296, 636
MspI CCGG 3 cut(s) 441, 909, 929
MspR9I CCNGG 1 cut(s) 363
MunI CAATTG 1 cut(s) 33
Mva1269I GAATGC 1 cut(s) 366
MvaI CCWGG 1 cut(s) 363
MvnI CGCG 1 cut(s) 130
MwoI GCNNNNNNNGC 9 cut(s) 83, 233, 284, 290, 293, 437, 710, 719, 902
NcoI CCATGG 2 cut(s) 760, 1011
NdeI CATATG 1 cut(s) 604
NdeII GATC 2 cut(s) 1044, 1075
NlaIII CATG 3 cut(s) 241, 764, 1015
NmeAIII GCCGAG 1 cut(s) 515
NmuCI GTSAC 1 cut(s) 992
NsiI ATGCAT 1 cut(s) 79
PctI GAATGC 1 cut(s) 366
PfeI GAWTC 1 cut(s) 587
PflFI GACNNNGTC 1 cut(s) 313
PinAI ACCGGT 1 cut(s) 928
PkrI GCNGC 5 cut(s) 286, 295, 739, 826, 949
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PpuMI RGGWCCY 1 cut(s) 359
PsiI TTATAA 1 cut(s) 1102
Psp124BI GAGCTC 1 cut(s) 769
Psp5II RGGWCCY 1 cut(s) 359
Psp6I CCWGG 1 cut(s) 361
PspGI CCWGG 1 cut(s) 361
PspPI GGNCC 3 cut(s) 324, 359, 438
PspPPI RGGWCCY 1 cut(s) 359
PsrI GAACNNNNNNTAC 2 cut(s) 960, 992
PstI CTGCAG 2 cut(s) 295, 742
PstNI CAGNNNCTG 2 cut(s) 290, 362
PsyI GACNNNGTC 1 cut(s) 313
PvuII CAGCTG 2 cut(s) 296, 636
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
RseI CAYNNNNRTG 1 cut(s) 305
SacI GAGCTC 1 cut(s) 769
SaqAI TTAA 6 cut(s) 447, 504, 533, 687, 885, 1019
SatI GCNGC 5 cut(s) 285, 294, 738, 825, 948
Sau3AI GATC 2 cut(s) 1044, 1075
Sau96I GGNCC 3 cut(s) 324, 359, 438
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 363
SduI GDGCHC 1 cut(s) 769
SfaNI GCATC 5 cut(s) 86, 201, 608, 700, 914
SfcI CTRYAG 3 cut(s) 231, 291, 738
SinI GGWCC 2 cut(s) 324, 359
SmiMI CAYNNNNRTG 1 cut(s) 305
SmlI CTYRAG 2 cut(s) 104, 178
SmoI CTYRAG 2 cut(s) 104, 178
Sse9I AATT 9 cut(s) 33, 216, 303, 671, 678, 696, 744, 837, 998
SsiI CCGC 2 cut(s) 130, 947
SspI AATATT 1 cut(s) 205
SspMI CTAG 2 cut(s) 719, 1095
SstI GAGCTC 1 cut(s) 769
StyD4I CCNGG 1 cut(s) 361
StyI CCWWGG 2 cut(s) 760, 1011
TaaI ACNGT 4 cut(s) 190, 315, 466, 651
TaiI ACGT 1 cut(s) 121
TaqI TCGA 4 cut(s) 142, 209, 339, 613
TasI AATT 9 cut(s) 33, 216, 303, 671, 678, 696, 744, 837, 998
TatI WGTACW 1 cut(s) 390
TauI GCSGC 1 cut(s) 950
TfiI GAWTC 1 cut(s) 587
Tru1I TTAA 6 cut(s) 447, 504, 533, 687, 885, 1019
Tru9I TTAA 6 cut(s) 447, 504, 533, 687, 885, 1019
TscAI CASTG 3 cut(s) 318, 340, 656
TseFI GTSAC 1 cut(s) 992
TseI GCWGC 4 cut(s) 284, 293, 737, 824
Tsp45I GTSAC 1 cut(s) 992
TspDTI ATGAA 2 cut(s) 42, 108
TspRI CASTG 3 cut(s) 318, 340, 656
Tth111I GACNNNGTC 1 cut(s) 313
VpaK11BI GGWCC 2 cut(s) 324, 359
XapI RAATTY 2 cut(s) 837, 998
XcmI CCANNNNNNNNNTGG 1 cut(s) 244
XmiI GTMKAC 1 cut(s) 925
XspI CTAG 2 cut(s) 719, 1095
Zsp2I ATGCAT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.