Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002723

Physical Location & Seq

Genomic Coordinates Reverse (-)

39180100 .. 39183618

Gene Structure 3519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G019610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGAGAACTCTGTTCAGTTCATTAATATGTTTCATTTGGATCAGAGAGAACTTTATACCAATATCAAAACAGAATAAGATGGATCAAATAACCAATGTTTCTGAGTATGAAGTAATTGCAAAGAAGAATTTGCCGAAGATGGTTTACGACTACTATGCATCAGGTGCAGAGGACCAGTGGACTCTTAAGGAGAATCTACTTGCCTTTTCCAGGATTTTGTTTCGACCTCGAATTCTTATTGATGTAAGCACAATAGACTTGAGCACAACTATTTTGGGCTTCAAAGTTTCAATGCCCATCATGATTGCTCCTACAAGCATGCAGAAGATGGCTCACCCTGAAGGAGAGTGTGCAACCGCAAGAGCAGCATCTGCAGCTGGCACAATTATGGCACTGTCCACTCTGGCTAATTCCAGCATTGAAGAAGTTGCCTCAACAGGACCTGGTATTCGCTTGTTCCAACTCTATGTGTTGAAAGACAGGAATCTGGTTACACAGCTTGTCAGAAGGGCTGAGAGGGCTGGTTACAAGGCAATAGTCCTCACTGTTGACACTCCGAGGCTTGGGCACAGGGAGGCTGATATCAAGAACAGGTTTACCATGTCACCAAGTTTGACATTGAAAAACTTTGAAAATTTGGATCTTGGAAAGATTGATGAGACCAATGATTCTGGATTAGCATCATATATTGCTGGACTAATTGACCGCTCTCTCAGCTGGAAGGATGTGAAATGGCTTCAGACTATCACTACATTACCAATTCTGATAAAGGGTGTAATTACTGCTGAGGATGCAAGGTTATGCATACAAGCTGGAGCTGCAGGAATAATTGTATCCAATCATGGAGCTCGGCAATTAGATTATGTCCCTGCAACTATTATGGCTTTGGAAGAGGTCGTCAAAGCTGCAGAGGGTCAAATTCCTGTTTTTCTGGATGGTGGAGTGAGGCGAGGAACAGATGTTTTTAAAGCTTTGGCTCTTGGAGCATCGGGTGTATTTCTTGGTAGACCAGTGGTGTTCTCATTAGCTGCTGCCGGTGAGGCTGGTGTAAGGAAAGTACTTCAAATGCTCCGTGATGAGCTTGAGCTAACAATGGCATTAAGTGGTTGCTGCTCGCTAAAGGAGATAAGGCGTGACCACATTGTGGCAGAATGGGACGCTCCTCGTATTGCTCCCAGATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009853 GO:0009987 GO:0010033 GO:0010109 GO:0016020 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0022626 GO:0030054 GO:0031323 GO:0032991 GO:0035821 GO:0042221 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050665 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0055044 GO:0055114 GO:0065007 GO:0072593 GO:0098542 GO:1903409 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

394

Amino Acids

43.31

Weight (kDa)

8.7

Isoelectric Point (pI)

33.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	40 - 381	8.3e-138	FMN-dependent dehydrogenase
NMO	PF03060	254 - 369	2.8e-07	Nitronate monooxygenase
IMPDH	PF00478	291 - 339	3.1e-06	IMP dehydrogenase / GMP reductase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18360 AT4G18360 AT4G18360 AT4G18360
fragaria_vesca	FvH4_3g05330 FvH4_3g05330 FvH4_3g05330 FvH4_3g05330
malus_domestica	MD05G1281900.v1.1 MD10G1260600.v1.1
prunus_persica	Prupe.4G082600_v2.0.a1 Prupe.4G082600_v2.0.a1 Prupe.4G082600_v2.0.a1 Prupe.4G082600_v2.0.a1 Prupe.4G082600_v2.0.a1
pyrus_communis	pycom05g26180 pycom10g21660
rosa_chinensis	RchiOBHm_Chr5g0014411 RchiOBHm_Chr6g0278091 RchiOBHm_Chr6g0278121 RchiOBHm_Chr6g0278131
rosa_laevigata	RLG00000013240 RLG00000032106
rosa_multiflora	Rmu_sc0000791.1_g000023 Rmu_sc0000791.1_g000034 Rmu_sc0000791.1_g000050 Rmu_ssc0000422.1_g000039
rosa_roxburghii	Rroxscaffold_1G00062170 Rroxscaffold_7G00190510 Rroxscaffold_7G00190520
rosa_rugosa	Rorug05G0017900 Rorug06G0114800
rosa_samantha	Rh5AG112700 Rh6BG228600 Rh6CG231000
rosa_wichuraiana	Rw5G009780 Rw6G019610 Rw6G019640 Rw6G019650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1144
AccBSI	CCGCTC	1 cut(s)	708
AccI	GTMKAC	1 cut(s)	1006
AciI	CCGC	2 cut(s)	357, 706
AclWI	GGATC	3 cut(s)	47, 90, 648
AcsI	RAATTY	4 cut(s)	127, 231, 634, 918
AcuI	CTGAAG	2 cut(s)	360, 722
AdeI	CACNNNGTG	1 cut(s)	1144
AfaI	GTAC	1 cut(s)	1059
AfiI	CCNNNNNNNGG	3 cut(s)	210, 563, 1144
AflII	CTTAAG	1 cut(s)	185
AgsI	TTSAA	7 cut(s)	283, 291, 422, 475, 622, 632, 1064
AjnI	CCWGG	2 cut(s)	209, 442
Alw21I	GWGCWC	2 cut(s)	266, 850
Alw26I	GTCTC	1 cut(s)	653
AlwI	GGATC	3 cut(s)	47, 90, 648
AlwNI	CAGNNNCTG	2 cut(s)	371, 443
ApeKI	GCWGC	7 cut(s)	365, 374, 818, 905, 1028, 1031, 1110
ApoI	RAATTY	4 cut(s)	127, 231, 634, 918
ArsI	GACNNNNNNTTYG	2 cut(s)	432, 464
AseI	ATTAAT	1 cut(s)	23
AspS9I	GGNCC	2 cut(s)	172, 440
AsuHPI	GGTGA	3 cut(s)	326, 597, 1049
AvaII	GGWCC	2 cut(s)	172, 440
BaeGI	GKGCMC	1 cut(s)	570
BanII	GRGCYC	1 cut(s)	850
BarI	GAAGNNNNNNTAC	2 cut(s)	128, 160
Bbv12I	GWGCWC	2 cut(s)	266, 850
BbvCI	CCTCAGC	1 cut(s)	786
BbvI	GCAGC	7 cut(s)	377, 386, 805, 892, 1015, 1018, 1097
BccI	CCATC	5 cut(s)	73, 133, 305, 322, 929
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BciT130I	CCWGG	2 cut(s)	211, 444
BciVI	GTATCC	1 cut(s)	844
BcoDI	GTCTC	1 cut(s)	653
BfmI	CTRYAG	3 cut(s)	372, 819, 906
BfrI	CTTAAG	1 cut(s)	185
BfuI	GTATCC	1 cut(s)	844
BglI	GCCNNNNNGGC	1 cut(s)	1040
BisI	GCNGC	7 cut(s)	366, 375, 819, 906, 1029, 1032, 1111
BlsI	GCNGC	7 cut(s)	367, 376, 820, 907, 1030, 1033, 1112
BmcAI	AGTACT	1 cut(s)	1059
Bme1390I	CCNGG	2 cut(s)	211, 444
Bme18I	GGWCC	2 cut(s)	172, 440
BmgT120I	GGNCC	2 cut(s)	172, 440
BmrFI	CCNGG	2 cut(s)	211, 444
BmsI	GCATC	5 cut(s)	167, 377, 689, 781, 995
BpmI	CTGGAG	1 cut(s)	834
Bpu10I	CCTNAGC	1 cut(s)	786
BpuEI	CTTGAG	2 cut(s)	280, 1103
BsaBI	GATNNNNATC	1 cut(s)	679
BsaI	GGTCTC	1 cut(s)	653
BsaJI	CCNNGG	1 cut(s)	557
Bsc4I	CCNNNNNNNGG	3 cut(s)	210, 563, 1144
Bse118I	RCCGGY	1 cut(s)	1034
Bse1I	ACTGG	2 cut(s)	175, 1010
Bse8I	GATNNNNATC	1 cut(s)	679
BseBI	CCWGG	2 cut(s)	211, 444
BseDI	CCNNGG	1 cut(s)	557
BseGI	GGATG	3 cut(s)	730, 796, 940
BseJI	GATNNNNATC	1 cut(s)	679
BseLI	CCNNNNNNNGG	3 cut(s)	210, 563, 1144
BseMII	CTCAG	4 cut(s)	93, 504, 727, 777
BseNI	ACTGG	2 cut(s)	175, 1010
BseRI	GAGGAG	1 cut(s)	1152
BseSI	GKGCMC	1 cut(s)	570
BseXI	GCAGC	7 cut(s)	377, 386, 805, 892, 1015, 1018, 1097
BsgI	GTGCAG	1 cut(s)	186
BsiHKAI	GWGCWC	2 cut(s)	266, 850
BsiSI	CCGG	1 cut(s)	1035
BslFI	GGGAC	2 cut(s)	851, 1169
BslI	CCNNNNNNNGG	3 cut(s)	210, 563, 1144
BsmAI	GTCTC	1 cut(s)	653
BsmFI	GGGAC	2 cut(s)	851, 1169
Bso31I	GGTCTC	1 cut(s)	653
Bsp1286I	GDGCHC	3 cut(s)	266, 570, 850
Bsp143I	GATC	3 cut(s)	39, 82, 640
BspACI	CCGC	2 cut(s)	357, 706
BspCNI	CTCAG	4 cut(s)	94, 505, 726, 778
BspHI	TCATGA	1 cut(s)	300
BspMAI	CTGCAG	3 cut(s)	376, 823, 910
BspPI	GGATC	3 cut(s)	47, 90, 648
BspTI	CTTAAG	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	653
BsrBI	CCGCTC	1 cut(s)	708
BsrFI	RCCGGY	1 cut(s)	1034
BsrI	ACTGG	2 cut(s)	175, 1010
BssAI	RCCGGY	1 cut(s)	1034
BssECI	CCNNGG	1 cut(s)	557
BssMI	GATC	3 cut(s)	39, 82, 640
Bst2UI	CCWGG	2 cut(s)	211, 444
Bst4CI	ACNGT	2 cut(s)	396, 547
Bst6I	CTCTTC	1 cut(s)	885
BstAFI	CTTAAG	1 cut(s)	185
BstAPI	GCANNNNNTGC	2 cut(s)	164, 371
BstC8I	GCNNGC	3 cut(s)	320, 379, 1115
BstDEI	CTNAG	4 cut(s)	102, 513, 713, 786
BstENI	CCTNNNNNAGG	1 cut(s)	208
BstF5I	GGATG	3 cut(s)	730, 796, 940
BstKTI	GATC	3 cut(s)	42, 85, 643
BstMAI	GTCTC	1 cut(s)	653
BstMBI	GATC	3 cut(s)	39, 82, 640
BstNI	CCWGG	2 cut(s)	211, 444
BstNSI	RCATGY	1 cut(s)	322
BstSCI	CCNGG	2 cut(s)	209, 442
BstSFI	CTRYAG	3 cut(s)	372, 819, 906
BstSLI	GKGCMC	1 cut(s)	570
BstV1I	GCAGC	7 cut(s)	377, 386, 805, 892, 1015, 1018, 1097
BstX2I	RGATCY	1 cut(s)	640
BstYI	RGATCY	1 cut(s)	640
BsuI	GTATCC	1 cut(s)	844
BtsCI	GGATG	3 cut(s)	730, 796, 940
BtsIMutI	CAGTG	4 cut(s)	182, 392, 543, 1017
Cac8I	GCNNGC	3 cut(s)	320, 379, 1115
CaiI	CAGNNNCTG	2 cut(s)	371, 443
CciI	TCATGA	1 cut(s)	300
Cfr10I	RCCGGY	1 cut(s)	1034
Cfr13I	GGNCC	2 cut(s)	172, 440
CseI	GACGC	1 cut(s)	1166
CsiI	ACCWGGT	1 cut(s)	442
Csp6I	GTAC	1 cut(s)	1058
CviAII	CATG	4 cut(s)	301, 319, 601, 842
CviQI	GTAC	1 cut(s)	1058
DdeI	CTNAG	4 cut(s)	102, 513, 713, 786
DpnI	GATC	3 cut(s)	41, 84, 642
DpnII	GATC	3 cut(s)	39, 82, 640
DraI	TTTAAA	1 cut(s)	967
DraIII	CACNNNGTG	1 cut(s)	1144
Eam1104I	CTCTTC	1 cut(s)	885
EarI	CTCTTC	1 cut(s)	885
Ecl136II	GAGCTC	1 cut(s)	848
Eco24I	GRGCYC	1 cut(s)	850
Eco31I	GGTCTC	1 cut(s)	653
Eco32I	GATATC	1 cut(s)	583
Eco47I	GGWCC	2 cut(s)	172, 440
Eco53kI	GAGCTC	1 cut(s)	848
Eco57I	CTGAAG	2 cut(s)	360, 722
EcoICRI	GAGCTC	1 cut(s)	848
EcoNI	CCTNNNNNAGG	1 cut(s)	208
EcoO109I	RGGNCCY	1 cut(s)	440
EcoRI	GAATTC	1 cut(s)	231
EcoRII	CCWGG	2 cut(s)	209, 442
EcoRV	GATATC	1 cut(s)	583
EcoT22I	ATGCAT	2 cut(s)	160, 806
EcoT38I	GRGCYC	1 cut(s)	850
FaeI	CATG	4 cut(s)	304, 322, 604, 845
FaqI	GGGAC	2 cut(s)	851, 1169
FatI	CATG	4 cut(s)	300, 318, 600, 841
FblI	GTMKAC	1 cut(s)	1006
Fnu4HI	GCNGC	7 cut(s)	366, 375, 819, 906, 1029, 1032, 1111
FokI	GGATG	3 cut(s)	737, 803, 947
FriOI	GRGCYC	1 cut(s)	850
Fsp4HI	GCNGC	7 cut(s)	366, 375, 819, 906, 1029, 1032, 1111
GluI	GCNGC	7 cut(s)	366, 375, 819, 906, 1029, 1032, 1111
GsuI	CTGGAG	1 cut(s)	834
HapII	CCGG	1 cut(s)	1035
HgaI	GACGC	1 cut(s)	1166
Hin1II	CATG	4 cut(s)	304, 322, 604, 845
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HindIII	AAGCTT	1 cut(s)	969
HinfI	GANTC	4 cut(s)	181, 193, 484, 668
HpaII	CCGG	1 cut(s)	1035
HphI	GGTGA	3 cut(s)	326, 597, 1049
Hpy166II	GTNNAC	6 cut(s)	145, 180, 399, 550, 597, 1007
Hpy188I	TCNGA	6 cut(s)	44, 103, 506, 558, 741, 765
Hpy188III	TCNNGA	4 cut(s)	301, 586, 672, 932
Hpy8I	GTNNAC	6 cut(s)	145, 180, 399, 550, 597, 1007
HpyAV	CCTTC	3 cut(s)	335, 501, 715
HpyCH4III	ACNGT	2 cut(s)	396, 547
HpyF3I	CTNAG	4 cut(s)	102, 513, 713, 786
Hsp92II	CATG	4 cut(s)	304, 322, 604, 845
Kzo9I	GATC	3 cut(s)	39, 82, 640
LmnI	GCTCC	7 cut(s)	313, 815, 845, 983, 1074, 1165, 1177
Lsp1109I	GCAGC	7 cut(s)	377, 386, 805, 892, 1015, 1018, 1097
LweI	GCATC	5 cut(s)	167, 377, 689, 781, 995
MabI	ACCWGGT	1 cut(s)	442
MaeIII	GTNAC	4 cut(s)	490, 524, 603, 1133
MalI	GATC	3 cut(s)	41, 84, 642
MbiI	CCGCTC	1 cut(s)	708
MboI	GATC	3 cut(s)	39, 82, 640
MboII	GAAGA	5 cut(s)	136, 148, 337, 434, 902
MflI	RGATCY	1 cut(s)	640
MhlI	GDGCHC	3 cut(s)	266, 570, 850
MlyI	GAGTC	1 cut(s)	175
MmeI	TCCRAC	1 cut(s)	484
Mph1103I	ATGCAT	2 cut(s)	160, 806
MseI	TTAA	4 cut(s)	23, 186, 966, 1100
MslI	CAYNNNNRTG	2 cut(s)	25, 386
MspA1I	CMGCKG	2 cut(s)	377, 717
MspCI	CTTAAG	1 cut(s)	185
MspI	CCGG	1 cut(s)	1035
MspR9I	CCNGG	2 cut(s)	211, 444
MvaI	CCWGG	2 cut(s)	211, 444
NdeII	GATC	3 cut(s)	39, 82, 640
NlaIII	CATG	4 cut(s)	304, 322, 604, 845
NmeAIII	GCCGAG	1 cut(s)	829
NmuCI	GTSAC	2 cut(s)	603, 1133
NsiI	ATGCAT	2 cut(s)	160, 806
NspI	RCATGY	1 cut(s)	322
PaeI	GCATGC	1 cut(s)	322
PagI	TCATGA	1 cut(s)	300
PfeI	GAWTC	3 cut(s)	193, 484, 668
PflMI	CCANNNNNTGG	1 cut(s)	1144
PfoI	TCCNGGA	1 cut(s)	209
PkrI	GCNGC	7 cut(s)	367, 376, 820, 907, 1030, 1033, 1112
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
PpuMI	RGGWCCY	1 cut(s)	440
PshBI	ATTAAT	1 cut(s)	23
Psp124BI	GAGCTC	1 cut(s)	850
Psp5II	RGGWCCY	1 cut(s)	440
Psp6I	CCWGG	2 cut(s)	209, 442
PspGI	CCWGG	2 cut(s)	209, 442
PspPI	GGNCC	2 cut(s)	172, 440
PspPPI	RGGWCCY	1 cut(s)	440
PstI	CTGCAG	3 cut(s)	376, 823, 910
PstNI	CAGNNNCTG	2 cut(s)	371, 443
PsuI	RGATCY	1 cut(s)	640
PvuII	CAGCTG	2 cut(s)	377, 717
RsaI	GTAC	1 cut(s)	1059
RsaNI	GTAC	1 cut(s)	1058
RseI	CAYNNNNRTG	2 cut(s)	25, 386
SacI	GAGCTC	1 cut(s)	850
SaqAI	TTAA	4 cut(s)	23, 186, 966, 1100
SatI	GCNGC	7 cut(s)	366, 375, 819, 906, 1029, 1032, 1111
Sau3AI	GATC	3 cut(s)	39, 82, 640
Sau96I	GGNCC	2 cut(s)	172, 440
ScaI	AGTACT	1 cut(s)	1059
SchI	GAGTC	1 cut(s)	175
ScrFI	CCNGG	2 cut(s)	211, 444
SduI	GDGCHC	3 cut(s)	266, 570, 850
SexAI	ACCWGGT	1 cut(s)	442
SfaNI	GCATC	5 cut(s)	167, 377, 689, 781, 995
SfcI	CTRYAG	3 cut(s)	372, 819, 906
SinI	GGWCC	2 cut(s)	172, 440
SmiMI	CAYNNNNRTG	2 cut(s)	25, 386
SmlI	CTYRAG	3 cut(s)	185, 259, 1082
SmoI	CTYRAG	3 cut(s)	185, 259, 1082
SphI	GCATGC	1 cut(s)	322
SsiI	CCGC	2 cut(s)	357, 706
SstI	GAGCTC	1 cut(s)	850
StyD4I	CCNGG	2 cut(s)	209, 442
TaaI	ACNGT	2 cut(s)	396, 547
TaqI	TCGA	2 cut(s)	223, 229
TatI	WGTACW	1 cut(s)	1057
TfiI	GAWTC	3 cut(s)	193, 484, 668
Tru1I	TTAA	4 cut(s)	23, 186, 966, 1100
Tru9I	TTAA	4 cut(s)	23, 186, 966, 1100
TscAI	CASTG	4 cut(s)	182, 399, 550, 1017
TseFI	GTSAC	2 cut(s)	603, 1133
TseI	GCWGC	7 cut(s)	365, 374, 818, 905, 1028, 1031, 1110
Tsp45I	GTSAC	2 cut(s)	603, 1133
TspDTI	ATGAA	3 cut(s)	9, 22, 123
TspGWI	ACGGA	1 cut(s)	1061
TspRI	CASTG	4 cut(s)	182, 399, 550, 1017
Van91I	CCANNNNNTGG	1 cut(s)	1144
Vha464I	CTTAAG	1 cut(s)	185
VpaK11BI	GGWCC	2 cut(s)	172, 440
VspI	ATTAAT	1 cut(s)	23
XagI	CCTNNNNNAGG	1 cut(s)	208
XapI	RAATTY	4 cut(s)	127, 231, 634, 918
XceI	RCATGY	1 cut(s)	322
XmiI	GTMKAC	1 cut(s)	1006
ZrmI	AGTACT	1 cut(s)	1059
Zsp2I	ATGCAT	2 cut(s)	160, 806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.