Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000791.1

Orthogroup ID

OG0002723

Physical Location & Seq

Genomic Coordinates Reverse (-)

128345 .. 131435

Gene Structure 3091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000791.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

atggatcaaataaccaatgtttctgagtatgaagcaattgcaaagaagaatttgccgaaaatggtttacgactactatgcagcaggtgcagaggaccagtggactcttaaggagaatctacttgcattttccaggattttgtttcgacctcgaattcttattgatgtaagcacaatagacttgagcacaactattttgggcttcaaagtttcaatgcccatcatgattgctcctacaggcatgcagaagatggctcaccctgaaggagagtgtgcaaccgcaagagcagcatctgcagctggcacaattatggtgttgaaacacaggaatctggttacacagctagtcagaagggctgagagggctggttacaaggcaatagtcctctctgttgacactccgaggcttgggcacagggaggctgatatcaagaacaggtttaccatctcaccaagttttacgtttaaaaacttcgaaaatttggatcttggaaagattgatgagaccaatgattctggattagcatcatatattgctggactaattgaccgctctctcagctggaaggatgtgaaatggcttcagactatcactacattaccaattctcataaagggtgtaattactgccgaggatacaaggttatgcatacaagctggagctgcaggaataattgtatccaatcatggagctcggcaactagattatgtccctgcaactattatggctttggaagagatcgtcagagctgcagagagtcaaattcctgtttttctggatggtggtgtgaggcgaggaacagatgtttttaaagctttggctcttggagcatcgggtgtatttattggtagaccagtggtgttctcattatctgctgccggtgaggctggtgtaaggaaagtacttcaaatgctccgtgatgaacttgagctaacaatggcattaagtggttgctgctcgctaaaggagataaggcgtgaccacattgtggcagaatgggacgctcctcgtattgctcccagattgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009853 GO:0009987 GO:0010033 GO:0010109 GO:0016020 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0022626 GO:0030054 GO:0031323 GO:0032991 GO:0035821 GO:0042221 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050665 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0055044 GO:0055114 GO:0065007 GO:0072593 GO:0098542 GO:1903409 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

342

Amino Acids

37.53

Weight (kDa)

8.59

Isoelectric Point (pI)

31.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18360 AT4G18360 AT4G18360 AT4G18360
fragaria_vesca	FvH4_3g05330 FvH4_3g05330 FvH4_3g05330 FvH4_3g05330
malus_domestica	MD05G1281900.v1.1 MD10G1260600.v1.1
prunus_persica	Prupe.4G082600_v2.0.a1 Prupe.4G082600_v2.0.a1 Prupe.4G082600_v2.0.a1 Prupe.4G082600_v2.0.a1 Prupe.4G082600_v2.0.a1
pyrus_communis	pycom05g26180 pycom10g21660
rosa_chinensis	RchiOBHm_Chr5g0014411 RchiOBHm_Chr6g0278091 RchiOBHm_Chr6g0278121 RchiOBHm_Chr6g0278131
rosa_laevigata	RLG00000013240 RLG00000032106
rosa_multiflora	Rmu_sc0000791.1_g000023 Rmu_sc0000791.1_g000034 Rmu_sc0000791.1_g000050 Rmu_ssc0000422.1_g000039
rosa_roxburghii	Rroxscaffold_1G00062170 Rroxscaffold_7G00190510 Rroxscaffold_7G00190520
rosa_rugosa	Rorug05G0017900 Rorug06G0114800
rosa_samantha	Rh5AG112700 Rh6BG228600 Rh6CG231000
rosa_wichuraiana	Rw5G009780 Rw6G019610 Rw6G019640 Rw6G019650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	74
Acc36I	ACCTGC	1 cut(s)	74
AccB7I	CCANNNNNTGG	1 cut(s)	988
AccBSI	CCGCTC	1 cut(s)	552
AccI	GTMKAC	1 cut(s)	850
AciI	CCGC	2 cut(s)	279, 550
AclWI	GGATC	2 cut(s)	12, 492
AcsI	RAATTY	4 cut(s)	49, 153, 478, 762
AcuI	CTGAAG	2 cut(s)	282, 566
AdeI	CACNNNGTG	1 cut(s)	988
AfaI	GTAC	1 cut(s)	903
AfiI	CCNNNNNNNGG	2 cut(s)	407, 988
AflII	CTTAAG	1 cut(s)	107
AgsI	TTSAA	4 cut(s)	205, 213, 319, 908
AjnI	CCWGG	1 cut(s)	131
AluBI	AGCT	9 cut(s)	299, 343, 561, 656, 662, 692, 749, 815, 931
AluI	AGCT	9 cut(s)	299, 343, 561, 656, 662, 692, 749, 815, 931
Alw21I	GWGCWC	2 cut(s)	188, 694
Alw26I	GTCTC	1 cut(s)	497
AlwI	GGATC	2 cut(s)	12, 492
AlwNI	CAGNNNCTG	1 cut(s)	293
ApeKI	GCWGC	7 cut(s)	80, 287, 296, 662, 749, 875, 954
ApoI	RAATTY	4 cut(s)	49, 153, 478, 762
AspS9I	GGNCC	1 cut(s)	94
AsuHPI	GGTGA	3 cut(s)	248, 441, 893
AsuII	TTCGAA	1 cut(s)	474
AvaII	GGWCC	1 cut(s)	94
BaeGI	GKGCMC	1 cut(s)	414
BanII	GRGCYC	1 cut(s)	694
Bbv12I	GWGCWC	2 cut(s)	188, 694
BbvI	GCAGC	7 cut(s)	92, 299, 308, 649, 736, 862, 941
BccI	CCATC	4 cut(s)	227, 244, 452, 773
BcgI	CGANNNNNNTGC	2 cut(s)	59, 93
BciT130I	CCWGG	1 cut(s)	133
BciVI	GTATCC	2 cut(s)	628, 688
BcoDI	GTCTC	1 cut(s)	497
BfaI	CTAG	2 cut(s)	344, 701
BfmI	CTRYAG	4 cut(s)	234, 294, 663, 750
BfrI	CTTAAG	1 cut(s)	107
BfuAI	ACCTGC	1 cut(s)	74
BfuI	GTATCC	2 cut(s)	628, 688
BglI	GCCNNNNNGGC	1 cut(s)	884
BisI	GCNGC	7 cut(s)	81, 288, 297, 663, 750, 876, 955
BlsI	GCNGC	7 cut(s)	82, 289, 298, 664, 751, 877, 956
BmcAI	AGTACT	1 cut(s)	903
Bme1390I	CCNGG	1 cut(s)	133
Bme18I	GGWCC	1 cut(s)	94
BmgT120I	GGNCC	1 cut(s)	94
BmrFI	CCNGG	1 cut(s)	133
BmsI	GCATC	3 cut(s)	299, 533, 839
BpmI	CTGGAG	1 cut(s)	678
Bpu14I	TTCGAA	1 cut(s)	474
BpuEI	CTTGAG	2 cut(s)	202, 947
BsaBI	GATNNNNATC	1 cut(s)	523
BsaI	GGTCTC	1 cut(s)	497
BsaJI	CCNNGG	2 cut(s)	401, 630
Bsc4I	CCNNNNNNNGG	2 cut(s)	407, 988
Bse118I	RCCGGY	1 cut(s)	878
Bse1I	ACTGG	2 cut(s)	97, 854
Bse8I	GATNNNNATC	1 cut(s)	523
BseBI	CCWGG	1 cut(s)	133
BseDI	CCNNGG	2 cut(s)	401, 630
BseGI	GGATG	2 cut(s)	574, 784
BseJI	GATNNNNATC	1 cut(s)	523
BseLI	CCNNNNNNNGG	2 cut(s)	407, 988
BseMII	CTCAG	3 cut(s)	15, 348, 571
BseNI	ACTGG	2 cut(s)	97, 854
BseRI	GAGGAG	1 cut(s)	996
BseSI	GKGCMC	1 cut(s)	414
BseXI	GCAGC	7 cut(s)	92, 299, 308, 649, 736, 862, 941
BsgI	GTGCAG	1 cut(s)	108
BsiHKAI	GWGCWC	2 cut(s)	188, 694
BsiSI	CCGG	1 cut(s)	879
BslFI	GGGAC	2 cut(s)	695, 1013
BslI	CCNNNNNNNGG	2 cut(s)	407, 988
BsmAI	GTCTC	1 cut(s)	497
BsmFI	GGGAC	2 cut(s)	695, 1013
Bso31I	GGTCTC	1 cut(s)	497
Bsp119I	TTCGAA	1 cut(s)	474
Bsp1286I	GDGCHC	3 cut(s)	188, 414, 694
Bsp143I	GATC	3 cut(s)	4, 484, 738
BspACI	CCGC	2 cut(s)	279, 550
BspCNI	CTCAG	3 cut(s)	16, 349, 570
BspHI	TCATGA	1 cut(s)	222
BspMAI	CTGCAG	3 cut(s)	298, 667, 754
BspMI	ACCTGC	1 cut(s)	74
BspPI	GGATC	2 cut(s)	12, 492
BspT104I	TTCGAA	1 cut(s)	474
BspTI	CTTAAG	1 cut(s)	107
BspTNI	GGTCTC	1 cut(s)	497
BsrBI	CCGCTC	1 cut(s)	552
BsrFI	RCCGGY	1 cut(s)	878
BsrI	ACTGG	2 cut(s)	97, 854
BssAI	RCCGGY	1 cut(s)	878
BssECI	CCNNGG	2 cut(s)	401, 630
BssMI	GATC	3 cut(s)	4, 484, 738
Bst2UI	CCWGG	1 cut(s)	133
Bst6I	CTCTTC	1 cut(s)	729
BstAFI	CTTAAG	1 cut(s)	107
BstAPI	GCANNNNNTGC	2 cut(s)	86, 293
BstBI	TTCGAA	1 cut(s)	474
BstC8I	GCNNGC	3 cut(s)	242, 301, 959
BstDEI	CTNAG	3 cut(s)	24, 357, 557
BstF5I	GGATG	2 cut(s)	574, 784
BstKTI	GATC	3 cut(s)	7, 487, 741
BstMAI	GTCTC	1 cut(s)	497
BstMBI	GATC	3 cut(s)	4, 484, 738
BstMWI	GCNNNNNNNGC	9 cut(s)	86, 287, 293, 296, 362, 558, 662, 827, 884
BstNI	CCWGG	1 cut(s)	133
BstNSI	RCATGY	1 cut(s)	244
BstSCI	CCNGG	1 cut(s)	131
BstSFI	CTRYAG	4 cut(s)	234, 294, 663, 750
BstSLI	GKGCMC	1 cut(s)	414
BstV1I	GCAGC	7 cut(s)	92, 299, 308, 649, 736, 862, 941
BstX2I	RGATCY	1 cut(s)	484
BstYI	RGATCY	1 cut(s)	484
BsuI	GTATCC	2 cut(s)	628, 688
BtsCI	GGATG	2 cut(s)	574, 784
BtsIMutI	CAGTG	2 cut(s)	104, 861
BveI	ACCTGC	1 cut(s)	74
Cac8I	GCNNGC	3 cut(s)	242, 301, 959
CaiI	CAGNNNCTG	1 cut(s)	293
CciI	TCATGA	1 cut(s)	222
Cfr10I	RCCGGY	1 cut(s)	878
Cfr13I	GGNCC	1 cut(s)	94
CseI	GACGC	1 cut(s)	1010
Csp6I	GTAC	1 cut(s)	902
CviAII	CATG	3 cut(s)	223, 241, 686
CviQI	GTAC	1 cut(s)	902
DdeI	CTNAG	3 cut(s)	24, 357, 557
DpnI	GATC	3 cut(s)	6, 486, 740
DpnII	GATC	3 cut(s)	4, 484, 738
DraI	TTTAAA	2 cut(s)	466, 811
DraIII	CACNNNGTG	1 cut(s)	988
Eam1104I	CTCTTC	1 cut(s)	729
EarI	CTCTTC	1 cut(s)	729
Ecl136II	GAGCTC	1 cut(s)	692
Eco24I	GRGCYC	1 cut(s)	694
Eco31I	GGTCTC	1 cut(s)	497
Eco32I	GATATC	1 cut(s)	427
Eco47I	GGWCC	1 cut(s)	94
Eco53kI	GAGCTC	1 cut(s)	692
Eco57I	CTGAAG	2 cut(s)	282, 566
EcoICRI	GAGCTC	1 cut(s)	692
EcoRI	GAATTC	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	131
EcoRV	GATATC	1 cut(s)	427
EcoT22I	ATGCAT	1 cut(s)	650
EcoT38I	GRGCYC	1 cut(s)	694
FaeI	CATG	3 cut(s)	226, 244, 689
FaqI	GGGAC	2 cut(s)	695, 1013
FatI	CATG	3 cut(s)	222, 240, 685
FblI	GTMKAC	1 cut(s)	850
Fnu4HI	GCNGC	7 cut(s)	81, 288, 297, 663, 750, 876, 955
FokI	GGATG	2 cut(s)	581, 791
FriOI	GRGCYC	1 cut(s)	694
Fsp4HI	GCNGC	7 cut(s)	81, 288, 297, 663, 750, 876, 955
FspBI	CTAG	2 cut(s)	344, 701
GluI	GCNGC	7 cut(s)	81, 288, 297, 663, 750, 876, 955
GsuI	CTGGAG	1 cut(s)	678
HapII	CCGG	1 cut(s)	879
HgaI	GACGC	1 cut(s)	1010
Hin1II	CATG	3 cut(s)	226, 244, 689
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HindIII	AAGCTT	1 cut(s)	813
HinfI	GANTC	5 cut(s)	103, 115, 328, 512, 757
HpaII	CCGG	1 cut(s)	879
HphI	GGTGA	3 cut(s)	248, 441, 893
Hpy166II	GTNNAC	5 cut(s)	67, 102, 394, 441, 851
Hpy188I	TCNGA	5 cut(s)	25, 350, 402, 585, 746
Hpy188III	TCNNGA	4 cut(s)	223, 430, 516, 776
Hpy8I	GTNNAC	5 cut(s)	67, 102, 394, 441, 851
HpyAV	CCTTC	3 cut(s)	257, 345, 559
HpyCH4IV	ACGT	1 cut(s)	461
HpyF10VI	GCNNNNNNNGC	9 cut(s)	86, 287, 293, 296, 362, 558, 662, 827, 884
HpyF3I	CTNAG	3 cut(s)	24, 357, 557
HpySE526I	ACGT	1 cut(s)	461
Hsp92II	CATG	3 cut(s)	226, 244, 689
Kzo9I	GATC	3 cut(s)	4, 484, 738
LmnI	GCTCC	7 cut(s)	235, 659, 689, 827, 918, 1009, 1021
Lsp1109I	GCAGC	7 cut(s)	92, 299, 308, 649, 736, 862, 941
LweI	GCATC	3 cut(s)	299, 533, 839
MaeI	CTAG	2 cut(s)	344, 701
MaeII	ACGT	1 cut(s)	461
MaeIII	GTNAC	3 cut(s)	334, 368, 977
MalI	GATC	3 cut(s)	6, 486, 740
MbiI	CCGCTC	1 cut(s)	552
MboI	GATC	3 cut(s)	4, 484, 738
MboII	GAAGA	3 cut(s)	58, 259, 746
MfeI	CAATTG	1 cut(s)	36
MflI	RGATCY	1 cut(s)	484
MhlI	GDGCHC	3 cut(s)	188, 414, 694
MlyI	GAGTC	2 cut(s)	97, 766
Mph1103I	ATGCAT	1 cut(s)	650
MseI	TTAA	4 cut(s)	108, 465, 810, 944
MslI	CAYNNNNRTG	1 cut(s)	308
MspA1I	CMGCKG	2 cut(s)	299, 561
MspCI	CTTAAG	1 cut(s)	107
MspI	CCGG	1 cut(s)	879
MspR9I	CCNGG	1 cut(s)	133
MunI	CAATTG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	133
MwoI	GCNNNNNNNGC	9 cut(s)	86, 287, 293, 296, 362, 558, 662, 827, 884
NdeII	GATC	3 cut(s)	4, 484, 738
NlaIII	CATG	3 cut(s)	226, 244, 689
NmeAIII	GCCGAG	2 cut(s)	655, 673
NmuCI	GTSAC	1 cut(s)	977
NsiI	ATGCAT	1 cut(s)	650
NspI	RCATGY	1 cut(s)	244
NspV	TTCGAA	1 cut(s)	474
PaeI	GCATGC	1 cut(s)	244
PagI	TCATGA	1 cut(s)	222
PaqCI	CACCTGC	1 cut(s)	74
PfeI	GAWTC	3 cut(s)	115, 328, 512
PflMI	CCANNNNNTGG	1 cut(s)	988
PfoI	TCCNGGA	1 cut(s)	131
PkrI	GCNGC	7 cut(s)	82, 289, 298, 664, 751, 877, 956
PleI	GAGTC	2 cut(s)	97, 765
PpsI	GAGTC	2 cut(s)	97, 765
Psp124BI	GAGCTC	1 cut(s)	694
Psp6I	CCWGG	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	131
PspPI	GGNCC	1 cut(s)	94
PstI	CTGCAG	3 cut(s)	298, 667, 754
PstNI	CAGNNNCTG	1 cut(s)	293
PsuI	RGATCY	1 cut(s)	484
PvuII	CAGCTG	2 cut(s)	299, 561
RsaI	GTAC	1 cut(s)	903
RsaNI	GTAC	1 cut(s)	902
RseI	CAYNNNNRTG	1 cut(s)	308
SacI	GAGCTC	1 cut(s)	694
SaqAI	TTAA	4 cut(s)	108, 465, 810, 944
SatI	GCNGC	7 cut(s)	81, 288, 297, 663, 750, 876, 955
Sau3AI	GATC	3 cut(s)	4, 484, 738
Sau96I	GGNCC	1 cut(s)	94
ScaI	AGTACT	1 cut(s)	903
SchI	GAGTC	2 cut(s)	97, 766
ScrFI	CCNGG	1 cut(s)	133
SduI	GDGCHC	3 cut(s)	188, 414, 694
SfaNI	GCATC	3 cut(s)	299, 533, 839
SfcI	CTRYAG	4 cut(s)	234, 294, 663, 750
SfuI	TTCGAA	1 cut(s)	474
SinI	GGWCC	1 cut(s)	94
SmiMI	CAYNNNNRTG	1 cut(s)	308
SmlI	CTYRAG	3 cut(s)	107, 181, 926
SmoI	CTYRAG	3 cut(s)	107, 181, 926
SphI	GCATGC	1 cut(s)	244
SsiI	CCGC	2 cut(s)	279, 550
SspMI	CTAG	2 cut(s)	344, 701
SstI	GAGCTC	1 cut(s)	694
StyD4I	CCNGG	1 cut(s)	131
TaiI	ACGT	1 cut(s)	464
TaqI	TCGA	3 cut(s)	145, 151, 474
TatI	WGTACW	1 cut(s)	901
TfiI	GAWTC	3 cut(s)	115, 328, 512
Tru1I	TTAA	4 cut(s)	108, 465, 810, 944
Tru9I	TTAA	4 cut(s)	108, 465, 810, 944
TscAI	CASTG	2 cut(s)	104, 861
TseFI	GTSAC	1 cut(s)	977
TseI	GCWGC	7 cut(s)	80, 287, 296, 662, 749, 875, 954
Tsp45I	GTSAC	1 cut(s)	977
TspDTI	ATGAA	2 cut(s)	45, 936
TspGWI	ACGGA	1 cut(s)	905
TspRI	CASTG	2 cut(s)	104, 861
Van91I	CCANNNNNTGG	1 cut(s)	988
Vha464I	CTTAAG	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	94
XapI	RAATTY	4 cut(s)	49, 153, 478, 762
XceI	RCATGY	1 cut(s)	244
XmiI	GTMKAC	1 cut(s)	850
XspI	CTAG	2 cut(s)	344, 701
ZrmI	AGTACT	1 cut(s)	903
Zsp2I	ATGCAT	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.