Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000422.1

Orthogroup ID

OG0002723

Physical Location & Seq

Genomic Coordinates Forward (+)

175232 .. 177650

Gene Structure 2419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000422.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

atggtttatgactactatgcatctggtgcagaggaccagtggactcttaaggagaacaaacgcgctttctccaggattttgtttcgacctcgtattcttattgatgtaagcaagatagacatgagaacaacagttttgggattcaatatttcaatgcccatcatgatagctcctacagccatgcagaagatggctcaccctgaaggagagtttgcaacagcaagagcagcatctgcagctgacacaattatgacactgtcctcttgggctacttccagtgtcgaagaggtcgcatcaacaggacctggcattcgttttttccaactctatgtgtacaaagacaggaatgtggttgcacagcttgtcaaaagagctgagaaagctggtttcaaggcaatagcccttacagtggacactccacggcttgggcgcagggaggctgatatcaagaacagatttactttaccatcaaatttgacattgaagaactttgagaatattgatctcggaaagatggacaagaccaatgattctggactagcatcatatgttgctggacaaattgaccggtctctcagctggaaggacgtgaaatggcttcagacaatcacccatttaccgattcttgtaaagggtgtgattacagctgaggatgcacaactagctgtacaatatggagctgcaggaataattgtctcgaaccatggagctcgccagcttgattatgtcccctcaactattatggctttggaagaggtcgtcaaagctacacgaggggcaattcctgtcttcttggatggtggagtgaggcgaggaacggatgttttcaaagctctggctcttggagcatcgggtgtatttatcggaagaccagtagtgttctccttagctgctgcaggggagtctggtgtcaggaaagtccttcaaatgctccgggatgagtttgagctgactatggcattaagcggttgccgctccctcaaggaaatcacccgagaccatatcgtaacggaatgggatcgtcctcgtattgcacccaaattataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009853 GO:0009987 GO:0010033 GO:0010109 GO:0016020 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0022626 GO:0030054 GO:0031323 GO:0032991 GO:0035821 GO:0042221 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050665 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0055044 GO:0055114 GO:0065007 GO:0072593 GO:0098542 GO:1903409 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

348

Amino Acids

38.33

Weight (kDa)

9.45

Isoelectric Point (pI)

32.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18360 AT4G18360 AT4G18360 AT4G18360
fragaria_vesca	FvH4_3g05330 FvH4_3g05330 FvH4_3g05330 FvH4_3g05330
malus_domestica	MD05G1281900.v1.1 MD10G1260600.v1.1
prunus_persica	Prupe.4G082600_v2.0.a1 Prupe.4G082600_v2.0.a1 Prupe.4G082600_v2.0.a1 Prupe.4G082600_v2.0.a1 Prupe.4G082600_v2.0.a1
pyrus_communis	pycom05g26180 pycom10g21660
rosa_chinensis	RchiOBHm_Chr5g0014411 RchiOBHm_Chr6g0278091 RchiOBHm_Chr6g0278121 RchiOBHm_Chr6g0278131
rosa_laevigata	RLG00000013240 RLG00000032106
rosa_multiflora	Rmu_sc0000791.1_g000023 Rmu_sc0000791.1_g000034 Rmu_sc0000791.1_g000050 Rmu_ssc0000422.1_g000039
rosa_roxburghii	Rroxscaffold_1G00062170 Rroxscaffold_7G00190510 Rroxscaffold_7G00190520
rosa_rugosa	Rorug05G0017900 Rorug06G0114800
rosa_samantha	Rh5AG112700 Rh6BG228600 Rh6CG231000
rosa_wichuraiana	Rw5G009780 Rw6G019610 Rw6G019640 Rw6G019650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1045
AccB7I	CCANNNNNTGG	1 cut(s)	425
AccBSI	CCGCTC	1 cut(s)	975
AccII	CGCG	1 cut(s)	63
AciI	CCGC	2 cut(s)	966, 973
AclWI	GGATC	1 cut(s)	1026
AcsI	RAATTY	1 cut(s)	472
AcuI	CTGAAG	2 cut(s)	222, 584
AfaI	GTAC	2 cut(s)	335, 669
AfiI	CCNNNNNNNGG	2 cut(s)	409, 425
AflII	CTTAAG	1 cut(s)	47
AgeI	ACCGGT	1 cut(s)	567
AgsI	TTSAA	6 cut(s)	145, 153, 391, 484, 829, 926
AjiI	CACGTC	1 cut(s)	589
AjnI	CCWGG	2 cut(s)	71, 304
Alw21I	GWGCWC	1 cut(s)	712
Alw26I	GTCTC	3 cut(s)	576, 700, 990
AlwI	GGATC	1 cut(s)	1026
AlwNI	CAGNNNCTG	2 cut(s)	233, 305
Ama87I	CYCGRG	1 cut(s)	993
ApeKI	GCWGC	5 cut(s)	227, 236, 680, 890, 893
ApoI	RAATTY	1 cut(s)	472
ArsI	GACNNNNNNTTYG	2 cut(s)	294, 326
AsiGI	ACCGGT	1 cut(s)	567
AspLEI	GCGC	2 cut(s)	65, 432
AspS9I	GGNCC	2 cut(s)	34, 302
AsuC2I	CCSGG	1 cut(s)	935
AsuHPI	GGTGA	3 cut(s)	188, 601, 982
AvaI	CYCGRG	1 cut(s)	993
AvaII	GGWCC	2 cut(s)	34, 302
BanII	GRGCYC	1 cut(s)	712
BauI	CACGAG	1 cut(s)	771
BbsI	GAAGAC	2 cut(s)	781, 874
Bbv12I	GWGCWC	1 cut(s)	712
BbvCI	CCTCAGC	1 cut(s)	648
BbvI	GCAGC	5 cut(s)	239, 248, 667, 877, 880
BccI	CCATC	5 cut(s)	167, 184, 475, 508, 791
BceAI	ACGGC	1 cut(s)	437
BciT130I	CCWGG	2 cut(s)	73, 306
BcnI	CCSGG	1 cut(s)	935
BcoDI	GTCTC	3 cut(s)	576, 700, 990
BfaI	CTAG	2 cut(s)	539, 662
BfmI	CTRYAG	4 cut(s)	174, 234, 681, 894
BfrI	CTTAAG	1 cut(s)	47
BisI	GCNGC	6 cut(s)	228, 237, 681, 891, 894, 973
BlsI	GCNGC	6 cut(s)	229, 238, 682, 892, 895, 974
Bme1390I	CCNGG	3 cut(s)	73, 306, 935
Bme18I	GGWCC	2 cut(s)	34, 302
BmeT110I	CYCGRG	1 cut(s)	993
BmgBI	CACGTC	1 cut(s)	589
BmgT120I	GGNCC	2 cut(s)	34, 302
BmrFI	CCNGG	3 cut(s)	73, 306, 935
BmsI	GCATC	6 cut(s)	29, 239, 302, 551, 643, 857
BpiI	GAAGAC	2 cut(s)	781, 874
BpmI	CTGGAG	1 cut(s)	55
Bpu10I	CCTNAGC	2 cut(s)	648, 886
BpuEI	CTTGAG	1 cut(s)	965
BpuMI	CCSGG	1 cut(s)	935
BsaI	GGTCTC	2 cut(s)	576, 990
BsaJI	CCNNGG	2 cut(s)	419, 703
BsaWI	WCCGGW	1 cut(s)	567
Bsc4I	CCNNNNNNNGG	2 cut(s)	409, 425
Bse118I	RCCGGY	1 cut(s)	567
Bse1I	ACTGG	3 cut(s)	37, 276, 872
BseBI	CCWGG	2 cut(s)	73, 306
BseDI	CCNNGG	2 cut(s)	419, 703
BseGI	GGATG	4 cut(s)	658, 802, 826, 943
BseLI	CCNNNNNNNGG	2 cut(s)	409, 425
BseMII	CTCAG	3 cut(s)	366, 589, 639
BseNI	ACTGG	3 cut(s)	37, 276, 872
BseXI	GCAGC	5 cut(s)	239, 248, 667, 877, 880
BsgI	GTGCAG	1 cut(s)	48
Bsh1236I	CGCG	1 cut(s)	63
BshTI	ACCGGT	1 cut(s)	567
BsiHKAI	GWGCWC	1 cut(s)	712
BsiHKCI	CYCGRG	1 cut(s)	993
BsiSI	CCGG	2 cut(s)	568, 934
BslFI	GGGAC	1 cut(s)	713
BslI	CCNNNNNNNGG	2 cut(s)	409, 425
BsmAI	GTCTC	3 cut(s)	576, 700, 990
BsmFI	GGGAC	1 cut(s)	713
BsmI	GAATGC	1 cut(s)	309
Bso31I	GGTCTC	2 cut(s)	576, 990
BsoBI	CYCGRG	1 cut(s)	993
Bsp1286I	GDGCHC	1 cut(s)	712
Bsp1407I	TGTACA	2 cut(s)	333, 667
Bsp143I	GATC	2 cut(s)	502, 1018
Bsp19I	CCATGG	1 cut(s)	703
BspACI	CCGC	2 cut(s)	966, 973
BspCNI	CTCAG	3 cut(s)	367, 588, 640
BspFNI	CGCG	1 cut(s)	63
BspHI	TCATGA	1 cut(s)	162
BspMAI	CTGCAG	3 cut(s)	238, 685, 898
BspPI	GGATC	1 cut(s)	1026
BspTI	CTTAAG	1 cut(s)	47
BspTNI	GGTCTC	2 cut(s)	576, 990
BsrBI	CCGCTC	1 cut(s)	975
BsrFI	RCCGGY	1 cut(s)	567
BsrGI	TGTACA	2 cut(s)	333, 667
BsrI	ACTGG	3 cut(s)	37, 276, 872
BssAI	RCCGGY	1 cut(s)	567
BssECI	CCNNGG	2 cut(s)	419, 703
BssMI	GATC	2 cut(s)	502, 1018
BssSI	CACGAG	1 cut(s)	771
BssT1I	CCWWGG	1 cut(s)	703
Bst2BI	CACGAG	1 cut(s)	771
Bst2UI	CCWGG	2 cut(s)	73, 306
Bst4CI	ACNGT	3 cut(s)	133, 258, 409
Bst6I	CTCTTC	2 cut(s)	279, 747
BstAFI	CTTAAG	1 cut(s)	47
BstAPI	GCANNNNNTGC	2 cut(s)	26, 233
BstAUI	TGTACA	2 cut(s)	333, 667
BstC8I	GCNNGC	2 cut(s)	712, 716
BstDEI	CTNAG	4 cut(s)	375, 575, 648, 886
BstDSI	CCRYGG	2 cut(s)	419, 703
BstF5I	GGATG	4 cut(s)	658, 802, 826, 943
BstFNI	CGCG	1 cut(s)	63
BstHHI	GCGC	2 cut(s)	65, 432
BstKTI	GATC	2 cut(s)	505, 1021
BstMAI	GTCTC	3 cut(s)	576, 700, 990
BstMBI	GATC	2 cut(s)	502, 1018
BstNI	CCWGG	2 cut(s)	73, 306
BstSCI	CCNGG	3 cut(s)	71, 304, 933
BstSFI	CTRYAG	4 cut(s)	174, 234, 681, 894
BstUI	CGCG	1 cut(s)	63
BstV1I	GCAGC	5 cut(s)	239, 248, 667, 877, 880
BstV2I	GAAGAC	2 cut(s)	781, 874
BtgI	CCRYGG	2 cut(s)	419, 703
BtrI	CACGTC	1 cut(s)	589
BtsCI	GGATG	4 cut(s)	658, 802, 826, 943
BtsIMutI	CAGTG	4 cut(s)	44, 254, 283, 414
Cac8I	GCNNGC	2 cut(s)	712, 716
CaiI	CAGNNNCTG	2 cut(s)	233, 305
CciI	TCATGA	1 cut(s)	162
CfoI	GCGC	2 cut(s)	65, 432
Cfr10I	RCCGGY	1 cut(s)	567
Cfr13I	GGNCC	2 cut(s)	34, 302
Csp6I	GTAC	2 cut(s)	334, 668
CspAI	ACCGGT	1 cut(s)	567
CviAII	CATG	4 cut(s)	121, 163, 181, 704
CviQI	GTAC	2 cut(s)	334, 668
DdeI	CTNAG	4 cut(s)	375, 575, 648, 886
DpnI	GATC	2 cut(s)	504, 1020
DpnII	GATC	2 cut(s)	502, 1018
Eam1104I	CTCTTC	2 cut(s)	279, 747
EarI	CTCTTC	2 cut(s)	279, 747
Ecl136II	GAGCTC	1 cut(s)	710
Eco130I	CCWWGG	1 cut(s)	703
Eco24I	GRGCYC	1 cut(s)	712
Eco31I	GGTCTC	2 cut(s)	576, 990
Eco32I	GATATC	1 cut(s)	445
Eco47I	GGWCC	2 cut(s)	34, 302
Eco53kI	GAGCTC	1 cut(s)	710
Eco57I	CTGAAG	2 cut(s)	222, 584
Eco88I	CYCGRG	1 cut(s)	993
EcoICRI	GAGCTC	1 cut(s)	710
EcoO109I	RGGNCCY	1 cut(s)	302
EcoRII	CCWGG	2 cut(s)	71, 304
EcoRV	GATATC	1 cut(s)	445
EcoT14I	CCWWGG	1 cut(s)	703
EcoT22I	ATGCAT	1 cut(s)	22
EcoT38I	GRGCYC	1 cut(s)	712
ErhI	CCWWGG	1 cut(s)	703
FaeI	CATG	4 cut(s)	124, 166, 184, 707
FaqI	GGGAC	1 cut(s)	713
FatI	CATG	4 cut(s)	120, 162, 180, 703
FauNDI	CATATG	1 cut(s)	547
Fnu4HI	GCNGC	6 cut(s)	228, 237, 681, 891, 894, 973
FokI	GGATG	4 cut(s)	665, 809, 833, 950
FriOI	GRGCYC	1 cut(s)	712
Fsp4HI	GCNGC	6 cut(s)	228, 237, 681, 891, 894, 973
FspBI	CTAG	2 cut(s)	539, 662
GlaI	GCGC	2 cut(s)	64, 431
GluI	GCNGC	6 cut(s)	228, 237, 681, 891, 894, 973
GsuI	CTGGAG	1 cut(s)	55
HapII	CCGG	2 cut(s)	568, 934
HhaI	GCGC	2 cut(s)	65, 432
Hin1II	CATG	4 cut(s)	124, 166, 184, 707
Hin6I	GCGC	2 cut(s)	63, 430
HinP1I	GCGC	2 cut(s)	63, 430
HinfI	GANTC	5 cut(s)	43, 141, 530, 622, 902
HpaII	CCGG	2 cut(s)	568, 934
HphI	GGTGA	3 cut(s)	188, 601, 982
Hpy166II	GTNNAC	3 cut(s)	42, 334, 412
Hpy188I	TCNGA	3 cut(s)	509, 603, 866
Hpy188III	TCNNGA	5 cut(s)	163, 448, 534, 697, 913
Hpy8I	GTNNAC	3 cut(s)	42, 334, 412
HpyAV	CCTTC	3 cut(s)	197, 577, 932
HpyCH4III	ACNGT	3 cut(s)	133, 258, 409
HpyCH4IV	ACGT	1 cut(s)	588
HpyF3I	CTNAG	4 cut(s)	375, 575, 648, 886
HpySE526I	ACGT	1 cut(s)	588
Hsp92II	CATG	4 cut(s)	124, 166, 184, 707
HspAI	GCGC	2 cut(s)	63, 430
Kzo9I	GATC	2 cut(s)	502, 1018
LmnI	GCTCC	6 cut(s)	175, 677, 707, 845, 936, 980
Lsp1109I	GCAGC	5 cut(s)	239, 248, 667, 877, 880
LweI	GCATC	6 cut(s)	29, 239, 302, 551, 643, 857
MaeI	CTAG	2 cut(s)	539, 662
MaeII	ACGT	1 cut(s)	588
MaeIII	GTNAC	1 cut(s)	1006
MalI	GATC	2 cut(s)	504, 1020
MbiI	CCGCTC	1 cut(s)	975
MboI	GATC	2 cut(s)	502, 1018
MboII	GAAGA	6 cut(s)	199, 296, 496, 764, 781, 879
MhlI	GDGCHC	1 cut(s)	712
MluCI	AATT	6 cut(s)	246, 472, 561, 690, 780, 1040
MlyI	GAGTC	2 cut(s)	37, 911
MmeI	TCCRAC	1 cut(s)	346
Mph1103I	ATGCAT	1 cut(s)	22
MseI	TTAA	2 cut(s)	48, 962
MslI	CAYNNNNRTG	1 cut(s)	248
MspA1I	CMGCKG	3 cut(s)	239, 579, 647
MspCI	CTTAAG	1 cut(s)	47
MspI	CCGG	2 cut(s)	568, 934
MspR9I	CCNGG	3 cut(s)	73, 306, 935
Mva1269I	GAATGC	1 cut(s)	309
MvaI	CCWGG	2 cut(s)	73, 306
MvnI	CGCG	1 cut(s)	63
NciI	CCSGG	1 cut(s)	935
NcoI	CCATGG	1 cut(s)	703
NdeI	CATATG	1 cut(s)	547
NdeII	GATC	2 cut(s)	502, 1018
NlaIII	CATG	4 cut(s)	124, 166, 184, 707
NsiI	ATGCAT	1 cut(s)	22
PagI	TCATGA	1 cut(s)	162
PctI	GAATGC	1 cut(s)	309
PfeI	GAWTC	3 cut(s)	141, 530, 622
PflFI	GACNNNGTC	1 cut(s)	256
PflMI	CCANNNNNTGG	1 cut(s)	425
PfoI	TCCNGGA	2 cut(s)	71, 933
PinAI	ACCGGT	1 cut(s)	567
PkrI	GCNGC	6 cut(s)	229, 238, 682, 892, 895, 974
PleI	GAGTC	2 cut(s)	37, 910
PpsI	GAGTC	2 cut(s)	37, 910
PpuMI	RGGWCCY	1 cut(s)	302
PsiI	TTATAA	1 cut(s)	1045
Psp124BI	GAGCTC	1 cut(s)	712
Psp5II	RGGWCCY	1 cut(s)	302
Psp6I	CCWGG	2 cut(s)	71, 304
PspGI	CCWGG	2 cut(s)	71, 304
PspPI	GGNCC	2 cut(s)	34, 302
PspPPI	RGGWCCY	1 cut(s)	302
PstI	CTGCAG	3 cut(s)	238, 685, 898
PstNI	CAGNNNCTG	2 cut(s)	233, 305
PsyI	GACNNNGTC	1 cut(s)	256
PvuII	CAGCTG	3 cut(s)	239, 579, 647
RsaI	GTAC	2 cut(s)	335, 669
RsaNI	GTAC	2 cut(s)	334, 668
RseI	CAYNNNNRTG	1 cut(s)	248
SacI	GAGCTC	1 cut(s)	712
SaqAI	TTAA	2 cut(s)	48, 962
SatI	GCNGC	6 cut(s)	228, 237, 681, 891, 894, 973
Sau3AI	GATC	2 cut(s)	502, 1018
Sau96I	GGNCC	2 cut(s)	34, 302
SchI	GAGTC	2 cut(s)	37, 911
ScrFI	CCNGG	3 cut(s)	73, 306, 935
SduI	GDGCHC	1 cut(s)	712
SfaNI	GCATC	6 cut(s)	29, 239, 302, 551, 643, 857
SfcI	CTRYAG	4 cut(s)	174, 234, 681, 894
SinI	GGWCC	2 cut(s)	34, 302
SmiMI	CAYNNNNRTG	1 cut(s)	248
SmlI	CTYRAG	2 cut(s)	47, 980
SmoI	CTYRAG	2 cut(s)	47, 980
Sse9I	AATT	6 cut(s)	246, 472, 561, 690, 780, 1040
SsiI	CCGC	2 cut(s)	966, 973
SspI	AATATT	2 cut(s)	148, 499
SspMI	CTAG	2 cut(s)	539, 662
SstI	GAGCTC	1 cut(s)	712
StyD4I	CCNGG	3 cut(s)	71, 304, 933
StyI	CCWWGG	1 cut(s)	703
TaaI	ACNGT	3 cut(s)	133, 258, 409
TaiI	ACGT	1 cut(s)	591
TaqI	TCGA	3 cut(s)	85, 282, 698
TasI	AATT	6 cut(s)	246, 472, 561, 690, 780, 1040
TatI	WGTACW	2 cut(s)	333, 667
TauI	GCSGC	1 cut(s)	975
TfiI	GAWTC	3 cut(s)	141, 530, 622
Tru1I	TTAA	2 cut(s)	48, 962
Tru9I	TTAA	2 cut(s)	48, 962
TscAI	CASTG	4 cut(s)	44, 261, 283, 414
TseI	GCWGC	5 cut(s)	227, 236, 680, 890, 893
TspGWI	ACGGA	2 cut(s)	833, 1025
TspRI	CASTG	4 cut(s)	44, 261, 283, 414
Tth111I	GACNNNGTC	1 cut(s)	256
Van91I	CCANNNNNTGG	1 cut(s)	425
Vha464I	CTTAAG	1 cut(s)	47
VpaK11BI	GGWCC	2 cut(s)	34, 302
XapI	RAATTY	1 cut(s)	472
XcmI	CCANNNNNNNNNTGG	1 cut(s)	187
XspI	CTAG	2 cut(s)	539, 662
Zsp2I	ATGCAT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.