Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008722

Physical Location & Seq

Genomic Coordinates Forward (+)

11572789 .. 11575145

Gene Structure 2357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G21800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGATCCTATGGAGTCGTCTAGTGAACAGGACATTGTTGAAGAGAGTCAAAAGCTGGTTGACTCATTGGACAAGCTTCGTGTTAGTGCTGCGAGTTCATCTTCTAATTTCAAGAAGAAGCCTATCATTATTATCGTTGTTGGAATGGCAGGTAGTGGAAAAACTAGCTTTCTTCATCGCTTGGTCTGTCATACTTTTGATTCAAAGAGCCATGGTTATGTGGTGAACCTTGACCCTGCTGTTATGTCTCTACCATTTGGTGCCAACATCGATATAAGAGACACTGTCAAGTACAAGGAAGTTATGAAGCAGTATAATCTGGGTCCTAATGGTGGAATTCTCACTTCACTCAACTTGTTTGCTACTAAATTCGACGAGGTTGTCTCTGTGATTGAGAAACGTGCAGACCAGCTTGATTATGTTCTTGTGGACACTCCTGGTCAGATTGAGATCTTTACATGGTCTGCTTCTGGGGCTATAATCACTGAAGCTTTCGCTTCAACCTTCCCCACTGTTGTCACCTATGTGGTTGATACTCCCCGTTCCTCAAGCCCAATCACTTTTATGAGCAACATGCTTTACGCTTGTAGTATTCTCTACAAGACTCGGTTGCCTCTTGTCTTGGCTTTCAACAAAACTGATGTCGCAGATCACAAGTTTGCTTTAGAGTGGATGGAAGATTTCGAGGTCTTTCAAGCAGCGATTCAGTCTGATAACTCGTACACGGCGACCTTAGCTAACAGTCTCTCCCTTTCACTCTACGAGTTCTACCGTAACATAAGATCCGTTGGTGTTTCTGCAATCTCTGGTGCTGGAATGGATGGCTTCTTTAAAGCCATTGAAGCAAGTGCTGAGGAATACATGGAAACTTACAAGGCTGATCTTGACATGAGAAAGGCGGACAAGGAGCGGTTGGAAGAAGAAAGAAAGAAACATGAAATGGAAAAACTAAGAAAGGATATGGAGAGTTCTCAGGGAGGCACTGTGGTTTTAAACACTGGTTTGAAAGACAGAGATGCAACAGAGAAGATGATGCTAGAGGAGGATGATGAGGACTTTCAGGTTGAAGATGAAGAAGACAGTGATGATGCCATAGATGAGGATGATGAAGACGACGAGACGAAGCATTACTACCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005874 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP_bind_1

Protein Analysis

379

Amino Acids

42.55

Weight (kDa)

4.51

Isoelectric Point (pI)

47.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP_bind_1	PF03029	46 - 284	6.3e-82	Conserved hypothetical ATP binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21800 AT4G21800
fragaria_vesca	FvH4_4g12660 FvH4_4g12660
malus_domestica	MD12G1007400.v1.1 MD13G1150100.v1.1 MD14G1004700.v1.1 MD16G1150500.v1.1
prunus_persica	Prupe.1G114400_v2.0.a1
pyrus_communis	pycom12g00540 pycom14g00320 pycom16g12890
rosa_chinensis	RchiOBHm_Chr4g0411531
rosa_laevigata	RLG00000008348
rosa_multiflora	Rmu_sc0001868.1_g000001
rosa_roxburghii	Rroxscaffold_5G00356100
rosa_rugosa	Rorug04G0108000
rosa_samantha	Rh4AG168800 Rh4BG165400 Rh4CG180200 Rh4DG163100
rosa_wichuraiana	Rw0G020790 Rw4G014020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	380
Acc36I	ACCTGC	1 cut(s)	140
AccB1I	GGYRCC	1 cut(s)	260
AccBSI	CCGCTC	1 cut(s)	910
AciI	CCGC	2 cut(s)	899, 910
AclWI	GGATC	2 cut(s)	12, 777
AcsI	RAATTY	2 cut(s)	336, 368
AcuI	CTGAAG	1 cut(s)	507
AfaI	GTAC	2 cut(s)	293, 722
AfiI	CCNNNNNNNGG	1 cut(s)	332
AgsI	TTSAA	9 cut(s)	41, 112, 204, 501, 631, 695, 842, 1006, 1067
AjnI	CCWGG	1 cut(s)	436
AleI	CACNNNNGTG	1 cut(s)	524
AluBI	AGCT	6 cut(s)	55, 76, 168, 412, 491, 737
AluI	AGCT	6 cut(s)	55, 76, 168, 412, 491, 737
Alw26I	GTCTC	5 cut(s)	252, 273, 388, 749, 1112
AlwI	GGATC	2 cut(s)	12, 777
ApeKI	GCWGC	2 cut(s)	89, 698
ApoI	RAATTY	2 cut(s)	336, 368
ArsI	GACNNNNNNTTYG	2 cut(s)	627, 659
AspS9I	GGNCC	1 cut(s)	323
AsuHPI	GGTGA	2 cut(s)	235, 511
AvaII	GGWCC	1 cut(s)	323
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	260
BarI	GAAGNNNNNNTAC	1 cut(s)	1115
BbsI	GAAGAC	2 cut(s)	1083, 1116
BbvCI	CCTCAGC	1 cut(s)	852
BbvI	GCAGC	2 cut(s)	76, 710
BccI	CCATC	2 cut(s)	667, 815
BceAI	ACGGC	1 cut(s)	741
BciT130I	CCWGG	1 cut(s)	438
BcoDI	GTCTC	5 cut(s)	252, 273, 388, 749, 1112
BfaI	CTAG	3 cut(s)	21, 165, 1037
BfuAI	ACCTGC	1 cut(s)	140
BglII	AGATCT	1 cut(s)	450
BisI	GCNGC	2 cut(s)	90, 699
BlsI	GCNGC	2 cut(s)	91, 700
Bme1390I	CCNGG	1 cut(s)	438
Bme18I	GGWCC	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	3 cut(s)	6, 262, 324
BmrFI	CCNGG	1 cut(s)	438
BmsI	GCATC	3 cut(s)	1006, 1023, 1078
BpiI	GAAGAC	2 cut(s)	1083, 1116
BplI	GAGNNNNNCTC	2 cut(s)	368, 400
Bpu10I	CCTNAGC	2 cut(s)	733, 852
BpuEI	CTTGAG	1 cut(s)	532
Bsa29I	ATCGAT	1 cut(s)	270
BsaBI	GATNNNNATC	1 cut(s)	449
BsaJI	CCNNGG	1 cut(s)	211
BsaXI	ACNNNNNCTCC	4 cut(s)	731, 761, 969, 999
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse1I	ACTGG	1 cut(s)	1003
Bse8I	GATNNNNATC	1 cut(s)	449
BseBI	CCWGG	1 cut(s)	438
BseCI	ATCGAT	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	211
BseGI	GGATG	4 cut(s)	678, 826, 1051, 1108
BseJI	GATNNNNATC	1 cut(s)	449
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseMII	CTCAG	2 cut(s)	843, 986
BseNI	ACTGG	1 cut(s)	1003
BseRI	GAGGAG	1 cut(s)	1055
BseXI	GCAGC	2 cut(s)	76, 710
BsgI	GTGCAG	1 cut(s)	423
BshNI	GGYRCC	1 cut(s)	260
BshVI	ATCGAT	1 cut(s)	270
BslI	CCNNNNNNNGG	1 cut(s)	332
BsmAI	GTCTC	5 cut(s)	252, 273, 388, 749, 1112
BsmBI	CGTCTC	1 cut(s)	1112
Bsp143I	GATC	5 cut(s)	4, 450, 649, 782, 880
Bsp19I	CCATGG	1 cut(s)	211
BspACI	CCGC	2 cut(s)	899, 910
BspCNI	CTCAG	2 cut(s)	844, 985
BspDI	ATCGAT	1 cut(s)	270
BspLI	GGNNCC	3 cut(s)	6, 262, 324
BspMI	ACCTGC	1 cut(s)	140
BspPI	GGATC	2 cut(s)	12, 777
BspT107I	GGYRCC	1 cut(s)	260
BsrBI	CCGCTC	1 cut(s)	910
BsrI	ACTGG	1 cut(s)	1003
BssECI	CCNNGG	1 cut(s)	211
BssMI	GATC	5 cut(s)	4, 450, 649, 782, 880
BssT1I	CCWWGG	1 cut(s)	211
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	6 cut(s)	286, 514, 743, 773, 985, 1082
Bst6I	CTCTTC	1 cut(s)	36
BstDEI	CTNAG	4 cut(s)	733, 852, 950, 972
BstDSI	CCRYGG	1 cut(s)	211
BstF5I	GGATG	4 cut(s)	678, 826, 1051, 1108
BstKTI	GATC	5 cut(s)	7, 453, 652, 785, 883
BstMAI	GTCTC	5 cut(s)	252, 273, 388, 749, 1112
BstMBI	GATC	5 cut(s)	4, 450, 649, 782, 880
BstMWI	GCNNNNNNNGC	3 cut(s)	473, 734, 842
BstNI	CCWGG	1 cut(s)	438
BstNSI	RCATGY	1 cut(s)	577
BstSCI	CCNGG	1 cut(s)	436
BstV1I	GCAGC	2 cut(s)	76, 710
BstV2I	GAAGAC	2 cut(s)	1083, 1116
BstX2I	RGATCY	3 cut(s)	4, 450, 782
BstYI	RGATCY	3 cut(s)	4, 450, 782
Bsu15I	ATCGAT	1 cut(s)	270
BsuTUI	ATCGAT	1 cut(s)	270
BtgI	CCRYGG	1 cut(s)	211
BtgZI	GCGATG	1 cut(s)	161
BtsCI	GGATG	4 cut(s)	678, 826, 1051, 1108
BtsIMutI	CAGTG	6 cut(s)	282, 483, 510, 981, 996, 1087
BveI	ACCTGC	1 cut(s)	140
Cfr13I	GGNCC	1 cut(s)	323
ClaI	ATCGAT	1 cut(s)	270
Csp6I	GTAC	2 cut(s)	292, 721
CviAII	CATG	6 cut(s)	212, 459, 574, 862, 889, 935
CviQI	GTAC	2 cut(s)	292, 721
DdeI	CTNAG	4 cut(s)	733, 852, 950, 972
DpnI	GATC	5 cut(s)	6, 452, 651, 784, 882
DpnII	GATC	5 cut(s)	4, 450, 649, 782, 880
DraI	TTTAAA	2 cut(s)	832, 993
DrdI	GACNNNNNNGTC	1 cut(s)	380
DseDI	GACNNNNNNGTC	1 cut(s)	380
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
EciI	GGCGGA	1 cut(s)	914
Eco130I	CCWWGG	1 cut(s)	211
Eco47I	GGWCC	1 cut(s)	323
Eco57I	CTGAAG	1 cut(s)	507
EcoO109I	RGGNCCY	1 cut(s)	323
EcoRI	GAATTC	1 cut(s)	336
EcoRII	CCWGG	1 cut(s)	436
EcoT14I	CCWWGG	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	211
Esp3I	CGTCTC	1 cut(s)	1112
FaeI	CATG	6 cut(s)	215, 462, 577, 865, 892, 938
FatI	CATG	6 cut(s)	211, 458, 573, 861, 888, 934
Fnu4HI	GCNGC	2 cut(s)	90, 699
FokI	GGATG	4 cut(s)	685, 833, 1058, 1115
Fsp4HI	GCNGC	2 cut(s)	90, 699
FspBI	CTAG	3 cut(s)	21, 165, 1037
GluI	GCNGC	2 cut(s)	90, 699
Hin1II	CATG	6 cut(s)	215, 462, 577, 865, 892, 938
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HindIII	AAGCTT	2 cut(s)	74, 489
HinfI	GANTC	6 cut(s)	14, 46, 62, 200, 604, 703
HphI	GGTGA	2 cut(s)	235, 511
Hpy166II	GTNNAC	5 cut(s)	26, 61, 226, 430, 723
Hpy188I	TCNGA	2 cut(s)	444, 712
Hpy188III	TCNNGA	2 cut(s)	112, 884
Hpy8I	GTNNAC	5 cut(s)	26, 61, 226, 430, 723
Hpy99I	CGWCG	2 cut(s)	377, 1118
HpyAV	CCTTC	1 cut(s)	514
HpyCH4III	ACNGT	6 cut(s)	286, 514, 743, 773, 985, 1082
HpyCH4IV	ACGT	1 cut(s)	400
HpyCH4V	TGCA	3 cut(s)	404, 800, 1019
HpyF10VI	GCNNNNNNNGC	3 cut(s)	473, 734, 842
HpyF3I	CTNAG	4 cut(s)	733, 852, 950, 972
HpySE526I	ACGT	1 cut(s)	400
Hsp92II	CATG	6 cut(s)	215, 462, 577, 865, 892, 938
Kzo9I	GATC	5 cut(s)	4, 450, 649, 782, 880
LmnI	GCTCC	1 cut(s)	907
Lsp1109I	GCAGC	2 cut(s)	76, 710
LweI	GCATC	3 cut(s)	1006, 1023, 1078
MaeI	CTAG	3 cut(s)	21, 165, 1037
MaeII	ACGT	1 cut(s)	400
MaeIII	GTNAC	2 cut(s)	517, 773
MalI	GATC	5 cut(s)	6, 452, 651, 784, 882
MbiI	CCGCTC	1 cut(s)	910
MboI	GATC	5 cut(s)	4, 450, 649, 782, 880
MflI	RGATCY	3 cut(s)	4, 450, 782
MluCI	AATT	3 cut(s)	106, 336, 368
MlyI	GAGTC	4 cut(s)	23, 55, 56, 598
MmeI	TCCRAC	2 cut(s)	121, 894
MseI	TTAA	2 cut(s)	831, 992
MslI	CAYNNNNRTG	3 cut(s)	216, 524, 563
MspR9I	CCNGG	1 cut(s)	438
MvaI	CCWGG	1 cut(s)	438
MwoI	GCNNNNNNNGC	3 cut(s)	473, 734, 842
NcoI	CCATGG	1 cut(s)	211
NdeII	GATC	5 cut(s)	4, 450, 649, 782, 880
NlaIII	CATG	6 cut(s)	215, 462, 577, 865, 892, 938
NlaIV	GGNNCC	3 cut(s)	6, 262, 324
NmuCI	GTSAC	1 cut(s)	517
NspI	RCATGY	1 cut(s)	577
OliI	CACNNNNGTG	1 cut(s)	524
PcsI	WCGNNNNNNNCGW	1 cut(s)	725
PfeI	GAWTC	2 cut(s)	200, 703
PflFI	GACNNNGTC	1 cut(s)	284
PkrI	GCNGC	2 cut(s)	91, 700
PleI	GAGTC	4 cut(s)	22, 54, 56, 598
PpsI	GAGTC	4 cut(s)	22, 54, 56, 598
PpuMI	RGGWCCY	1 cut(s)	323
Psp5II	RGGWCCY	1 cut(s)	323
Psp6I	CCWGG	1 cut(s)	436
PspGI	CCWGG	1 cut(s)	436
PspN4I	GGNNCC	3 cut(s)	6, 262, 324
PspPI	GGNCC	1 cut(s)	323
PspPPI	RGGWCCY	1 cut(s)	323
PsuI	RGATCY	3 cut(s)	4, 450, 782
PsyI	GACNNNGTC	1 cut(s)	284
RsaI	GTAC	2 cut(s)	293, 722
RsaNI	GTAC	2 cut(s)	292, 721
RseI	CAYNNNNRTG	3 cut(s)	216, 524, 563
SaqAI	TTAA	2 cut(s)	831, 992
SatI	GCNGC	2 cut(s)	90, 699
Sau3AI	GATC	5 cut(s)	4, 450, 649, 782, 880
Sau96I	GGNCC	1 cut(s)	323
SchI	GAGTC	4 cut(s)	23, 55, 56, 598
ScrFI	CCNGG	1 cut(s)	438
SfaNI	GCATC	3 cut(s)	1006, 1023, 1078
SinI	GGWCC	1 cut(s)	323
SmiMI	CAYNNNNRTG	3 cut(s)	216, 524, 563
SmlI	CTYRAG	1 cut(s)	547
SmoI	CTYRAG	1 cut(s)	547
Sse9I	AATT	3 cut(s)	106, 336, 368
SsiI	CCGC	2 cut(s)	899, 910
SspMI	CTAG	3 cut(s)	21, 165, 1037
StyD4I	CCNGG	1 cut(s)	436
StyI	CCWWGG	1 cut(s)	211
TaaI	ACNGT	6 cut(s)	286, 514, 743, 773, 985, 1082
TaiI	ACGT	1 cut(s)	403
TaqI	TCGA	3 cut(s)	270, 372, 684
TasI	AATT	3 cut(s)	106, 336, 368
TatI	WGTACW	1 cut(s)	291
TfiI	GAWTC	2 cut(s)	200, 703
Tru1I	TTAA	2 cut(s)	831, 992
Tru9I	TTAA	2 cut(s)	831, 992
TscAI	CASTG	6 cut(s)	289, 490, 517, 988, 1003, 1087
TseFI	GTSAC	1 cut(s)	517
TseI	GCWGC	2 cut(s)	89, 698
Tsp45I	GTSAC	1 cut(s)	517
TspDTI	ATGAA	6 cut(s)	87, 164, 320, 951, 1086, 1122
TspGWI	ACGGA	1 cut(s)	775
TspRI	CASTG	6 cut(s)	289, 490, 517, 988, 1003, 1087
Tth111I	GACNNNGTC	1 cut(s)	284
VpaK11BI	GGWCC	1 cut(s)	323
XapI	RAATTY	2 cut(s)	336, 368
XceI	RCATGY	1 cut(s)	577
XspI	CTAG	3 cut(s)	21, 165, 1037

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.