Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0008722

Physical Location & Seq

Genomic Coordinates Reverse (-)

9106185 .. 9108846

Gene Structure 2662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g12890.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGACATCGATTCAGATTTCCAGAAAATTAACATCAAATCGCAGGAGGAAGGAGGTGGCGCGCCCATACCCATGGACTCCGAAGACTCTTCCACCATTCAGGGCAAAGAAGATGAGGAACTTACTGATTCGATGAAGAAACTGCAAGTTGAGGAATCATCGTCAGGGCAGTCAGGGTCCAATTTCAAGAGAAAACCTGTCATTATAATTGTGGTGGGCATGGCAGGGAGTGGTAAGACAACCTTTATGCAGCAGTTGGTTTCACACACTCGTGAATCCAACATTCGTGGCTATGTGATGAACCTTGACCCAGCTGTGATGACTTTACCGTTTGGCGCAAATATTGACATAAGGGATACCGTTCGGTACAAGGAGGTGATGAAGCAATTCAATCTTGGACCAAATGGGGGGATTTTGACTTCACTCAACTTGTTTGCTACCAAGTTTGATGAGGTTGTTTCAGTCATTGAGAAGCGAGCGCATCAGCTTGATTATGTTCTTGTGGATACTCCGGGTCAGATTGAGATATTCACTTGGTCTGCCTCTGGTGCTATCATCACAGAAGCATTTGCATCAACGTTTCCCACTGTAATTGCTTACGTGGTAGATACACCTCGTTCAGCTAGCCCGGTTACTTTTATGAGCAACATGCTTTATGCTTGTAGTATCCTTTACAAGACAAGGTTACCTCTTGTGTTGGCATTCAACAAGATTGATGTGGCTCAACATCAGTTTGCTTTGGAGTGGATGGAGGATTTTGAGACGTTTCAAGCAGCAGTGAGTGCAGATAGTTCGTACTCTTCAAATTTAGCTCAGAGCCTCTCCCTTGTGCTGGATGAATTTTATAAGAACTTGCGGTCTGTTGGAGTTTCTGCGGTTTCTGGTGCTGGAATGAAGGATTTCTTTAAGGCCGTTGAAGCTAGTGCTGAGGAGTACATGGACAGCTATAAGGCTGATCTGGACAAAAGACGGGCAGAGAAGCAACGTTTGGAGGAGGAACACAGAAAGGAGAACATGGAGAAGTTGAGGAAGGATATGGAGAAGTCCGGGGGAGAAACTGTGGTCTTGAGCACTGGTTTGAAGGACAAAGGTGAGAGGGGCAAAGCCATGATGGATGAGGACGAGGAAGATCAAGTTGAAGAGGAAGATGAGATGTTCACCGAAGATGAAGATGAAGAGGCTGAAAGGTTCGCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005874 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP_bind_1

Protein Analysis

400

Amino Acids

44.6

Weight (kDa)

4.57

Isoelectric Point (pI)

50.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21800 AT4G21800
fragaria_vesca	FvH4_4g12660 FvH4_4g12660
malus_domestica	MD12G1007400.v1.1 MD13G1150100.v1.1 MD14G1004700.v1.1 MD16G1150500.v1.1
prunus_persica	Prupe.1G114400_v2.0.a1
pyrus_communis	pycom12g00540 pycom14g00320 pycom16g12890
rosa_chinensis	RchiOBHm_Chr4g0411531
rosa_laevigata	RLG00000008348
rosa_multiflora	Rmu_sc0001868.1_g000001
rosa_roxburghii	Rroxscaffold_5G00356100
rosa_rugosa	Rorug04G0108000
rosa_samantha	Rh4AG168800 Rh4BG165400 Rh4CG180200 Rh4DG163100
rosa_wichuraiana	Rw0G020790 Rw4G014020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	206, 846
AccII	CGCG	1 cut(s)	62
AciI	CCGC	2 cut(s)	856, 875
AclI	AACGTT	2 cut(s)	578, 985
AcsI	RAATTY	2 cut(s)	805, 839
AfaI	GTAC	3 cut(s)	368, 797, 935
AfiI	CCNNNNNNNGG	2 cut(s)	407, 832
AgsI	TTSAA	8 cut(s)	187, 391, 706, 770, 804, 917, 1081, 1139
AjuI	GAANNNNNNNTTGG	2 cut(s)	971, 1003
AleI	CACNNNNGTG	1 cut(s)	270
AluBI	AGCT	6 cut(s)	314, 487, 623, 812, 920, 945
AluI	AGCT	6 cut(s)	314, 487, 623, 812, 920, 945
Alw21I	GWGCWC	1 cut(s)	1073
Alw26I	GTCTC	1 cut(s)	755
AoxI	GGCC	1 cut(s)	909
ApeKI	GCWGC	2 cut(s)	250, 773
ApoI	RAATTY	2 cut(s)	805, 839
AscI	GGCGCGCC	1 cut(s)	60
Asp700I	GAANNNNTTC	2 cut(s)	386, 899
AspLEI	GCGC	4 cut(s)	62, 64, 338, 481
AspS9I	GGNCC	2 cut(s)	177, 398
AsuC2I	CCSGG	3 cut(s)	513, 629, 1048
AsuHPI	GGTGA	3 cut(s)	388, 1103, 1150
AsuNHI	GCTAGC	1 cut(s)	623
AvaII	GGWCC	2 cut(s)	177, 398
BauI	CACGAG	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	1073
BbvCI	CCTCAGC	1 cut(s)	927
BbvI	GCAGC	2 cut(s)	262, 785
BccI	CCATC	2 cut(s)	742, 1105
BceAI	ACGGC	1 cut(s)	896
BcgI	CGANNNNNNTGC	2 cut(s)	774, 808
BciVI	GTATCC	3 cut(s)	349, 499, 677
BcnI	CCSGG	3 cut(s)	513, 629, 1048
BcoDI	GTCTC	1 cut(s)	755
BfaI	CTAG	2 cut(s)	624, 921
BfuI	GTATCC	3 cut(s)	349, 499, 677
BisI	GCNGC	2 cut(s)	251, 774
BlsI	GCNGC	2 cut(s)	252, 775
Bme1390I	CCNGG	3 cut(s)	513, 629, 1048
Bme18I	GGWCC	2 cut(s)	177, 398
BmgT120I	GGNCC	2 cut(s)	177, 398
BmiI	GGNNCC	1 cut(s)	178
BmrFI	CCNGG	3 cut(s)	513, 629, 1048
BmsI	GCATC	2 cut(s)	490, 581
BmtI	GCTAGC	1 cut(s)	627
BpiI	GAAGAC	1 cut(s)	90
Bpu10I	CCTNAGC	1 cut(s)	927
BpuEI	CTTGAG	1 cut(s)	1087
BpuMI	CCSGG	3 cut(s)	513, 629, 1048
Bsa29I	ATCGAT	1 cut(s)	9
BsaAI	YACGTR	1 cut(s)	601
BsaJI	CCNNGG	2 cut(s)	72, 1047
BsaXI	ACNNNNNCTCC	2 cut(s)	1044, 1074
Bsc4I	CCNNNNNNNGG	2 cut(s)	407, 832
Bse1I	ACTGG	1 cut(s)	1078
BseCI	ATCGAT	1 cut(s)	9
BseDI	CCNNGG	2 cut(s)	72, 1047
BseGI	GGATG	3 cut(s)	753, 841, 1120
BseLI	CCNNNNNNNGG	2 cut(s)	407, 832
BseMII	CTCAG	2 cut(s)	827, 918
BseNI	ACTGG	1 cut(s)	1078
BsePI	GCGCGC	1 cut(s)	60
BseRI	GAGGAG	2 cut(s)	944, 1007
BseXI	GCAGC	2 cut(s)	262, 785
BseYI	CCCAGC	1 cut(s)	310
BsgI	GTGCAG	1 cut(s)	804
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	1 cut(s)	911
BshVI	ATCGAT	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	1073
BsiSI	CCGG	3 cut(s)	512, 629, 1047
BslI	CCNNNNNNNGG	2 cut(s)	407, 832
BsmAI	GTCTC	1 cut(s)	755
BsmBI	CGTCTC	1 cut(s)	755
BsmI	GAATGC	1 cut(s)	701
BsnI	GGCC	1 cut(s)	911
Bsp1286I	GDGCHC	1 cut(s)	1073
Bsp143I	GATC	2 cut(s)	955, 1129
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	2 cut(s)	856, 875
BspANI	GGCC	1 cut(s)	911
BspCNI	CTCAG	2 cut(s)	826, 919
BspDI	ATCGAT	1 cut(s)	9
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	1 cut(s)	178
BspOI	GCTAGC	1 cut(s)	627
BsrI	ACTGG	1 cut(s)	1078
BssECI	CCNNGG	2 cut(s)	72, 1047
BssHII	GCGCGC	1 cut(s)	60
BssMI	GATC	2 cut(s)	955, 1129
BssSI	CACGAG	1 cut(s)	270
BssT1I	CCWWGG	1 cut(s)	72
Bst2BI	CACGAG	1 cut(s)	270
Bst4CI	ACNGT	4 cut(s)	330, 361, 589, 1060
Bst6I	CTCTTC	4 cut(s)	94, 805, 1134, 1170
BstAPI	GCANNNNNTGC	1 cut(s)	782
BstBAI	YACGTR	1 cut(s)	601
BstC8I	GCNNGC	3 cut(s)	62, 477, 625
BstDEI	CTNAG	2 cut(s)	813, 927
BstDSI	CCRYGG	1 cut(s)	72
BstEII	GGTNACC	1 cut(s)	684
BstF5I	GGATG	3 cut(s)	753, 841, 1120
BstFNI	CGCG	1 cut(s)	62
BstHHI	GCGC	4 cut(s)	62, 64, 338, 481
BstKTI	GATC	2 cut(s)	958, 1132
BstMAI	GTCTC	1 cut(s)	755
BstMBI	GATC	2 cut(s)	955, 1129
BstMWI	GCNNNNNNNGC	3 cut(s)	548, 782, 917
BstNSI	RCATGY	1 cut(s)	652
BstPI	GGTNACC	1 cut(s)	684
BstSCI	CCNGG	3 cut(s)	511, 627, 1046
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	2 cut(s)	262, 785
BstV2I	GAAGAC	1 cut(s)	90
BstXI	CCANNNNNNTGG	1 cut(s)	73
Bsu15I	ATCGAT	1 cut(s)	9
BsuI	GTATCC	3 cut(s)	349, 499, 677
BsuRI	GGCC	1 cut(s)	911
BsuTUI	ATCGAT	1 cut(s)	9
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	3 cut(s)	753, 841, 1120
BtsI	GCAGTG	1 cut(s)	783
BtsIMutI	CAGTG	3 cut(s)	585, 783, 1071
Cac8I	GCNNGC	3 cut(s)	62, 477, 625
CfoI	GCGC	4 cut(s)	62, 64, 338, 481
Cfr13I	GGNCC	2 cut(s)	177, 398
ClaI	ATCGAT	1 cut(s)	9
Csp6I	GTAC	3 cut(s)	367, 796, 934
CspCI	CAANNNNNGTGG	4 cut(s)	268, 303, 574, 609
CviAII	CATG	6 cut(s)	73, 220, 649, 937, 1015, 1108
CviQI	GTAC	3 cut(s)	367, 796, 934
DdeI	CTNAG	2 cut(s)	813, 927
DpnI	GATC	2 cut(s)	957, 1131
DpnII	GATC	2 cut(s)	955, 1129
Eam1104I	CTCTTC	4 cut(s)	94, 805, 1134, 1170
EarI	CTCTTC	4 cut(s)	94, 805, 1134, 1170
Eco130I	CCWWGG	1 cut(s)	72
Eco47I	GGWCC	2 cut(s)	177, 398
Eco91I	GGTNACC	1 cut(s)	684
EcoO65I	GGTNACC	1 cut(s)	684
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
Esp3I	CGTCTC	1 cut(s)	755
FaeI	CATG	6 cut(s)	76, 223, 652, 940, 1018, 1111
FalI	AAGNNNNNCTT	4 cut(s)	227, 259, 887, 919
FatI	CATG	6 cut(s)	72, 219, 648, 936, 1014, 1107
Fnu4HI	GCNGC	2 cut(s)	251, 774
FokI	GGATG	3 cut(s)	760, 848, 1127
Fsp4HI	GCNGC	2 cut(s)	251, 774
FspBI	CTAG	2 cut(s)	624, 921
GlaI	GCGC	4 cut(s)	61, 63, 337, 480
GluI	GCNGC	2 cut(s)	251, 774
GsaI	CCCAGC	1 cut(s)	314
HaeIII	GGCC	1 cut(s)	911
HapII	CCGG	3 cut(s)	512, 629, 1047
HhaI	GCGC	4 cut(s)	62, 64, 338, 481
Hin1II	CATG	6 cut(s)	76, 223, 652, 940, 1018, 1111
Hin6I	GCGC	4 cut(s)	60, 62, 336, 479
HinP1I	GCGC	4 cut(s)	60, 62, 336, 479
HinfI	GANTC	6 cut(s)	11, 77, 86, 128, 155, 275
HpaII	CCGG	3 cut(s)	512, 629, 1047
HphI	GGTGA	3 cut(s)	388, 1103, 1150
Hpy166II	GTNNAC	1 cut(s)	1158
Hpy188I	TCNGA	4 cut(s)	16, 82, 519, 816
Hpy188III	TCNNGA	5 cut(s)	22, 187, 272, 959, 1066
Hpy8I	GTNNAC	1 cut(s)	1158
HpyAV	CCTTC	4 cut(s)	44, 889, 1024, 1075
HpyCH4III	ACNGT	4 cut(s)	330, 361, 589, 1060
HpyCH4IV	ACGT	4 cut(s)	578, 600, 764, 985
HpyCH4V	TGCA	4 cut(s)	145, 250, 572, 785
HpyF10VI	GCNNNNNNNGC	3 cut(s)	548, 782, 917
HpyF3I	CTNAG	2 cut(s)	813, 927
HpySE526I	ACGT	4 cut(s)	578, 600, 764, 985
Hsp92II	CATG	6 cut(s)	76, 223, 652, 940, 1018, 1111
HspAI	GCGC	4 cut(s)	60, 62, 336, 479
Kzo9I	GATC	2 cut(s)	955, 1129
Lsp1109I	GCAGC	2 cut(s)	262, 785
LweI	GCATC	2 cut(s)	490, 581
MaeI	CTAG	2 cut(s)	624, 921
MaeII	ACGT	4 cut(s)	578, 600, 764, 985
MaeIII	GTNAC	2 cut(s)	631, 684
MalI	GATC	2 cut(s)	957, 1131
MboI	GATC	2 cut(s)	955, 1129
MhlI	GDGCHC	1 cut(s)	1073
MluCI	AATT	7 cut(s)	27, 181, 207, 386, 591, 805, 839
MlyI	GAGTC	2 cut(s)	71, 80
MmeI	TCCRAC	2 cut(s)	303, 844
MroXI	GAANNNNTTC	2 cut(s)	386, 899
MseI	TTAA	2 cut(s)	30, 906
MslI	CAYNNNNRTG	2 cut(s)	71, 270
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	3 cut(s)	512, 629, 1047
MspR9I	CCNGG	3 cut(s)	513, 629, 1048
Mva1269I	GAATGC	1 cut(s)	701
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	3 cut(s)	548, 782, 917
NciI	CCSGG	3 cut(s)	513, 629, 1048
NcoI	CCATGG	1 cut(s)	72
NdeII	GATC	2 cut(s)	955, 1129
NheI	GCTAGC	1 cut(s)	623
NlaIII	CATG	6 cut(s)	76, 223, 652, 940, 1018, 1111
NlaIV	GGNNCC	1 cut(s)	178
NspI	RCATGY	1 cut(s)	652
OliI	CACNNNNGTG	1 cut(s)	270
PalAI	GGCGCGCC	1 cut(s)	60
PauI	GCGCGC	1 cut(s)	60
PctI	GAATGC	1 cut(s)	701
PdmI	GAANNNNTTC	2 cut(s)	386, 899
PfeI	GAWTC	4 cut(s)	11, 128, 155, 275
PkrI	GCNGC	2 cut(s)	252, 775
PleI	GAGTC	2 cut(s)	71, 80
PpsI	GAGTC	2 cut(s)	71, 80
Ppu21I	YACGTR	1 cut(s)	601
PsiI	TTATAA	2 cut(s)	206, 846
Psp1406I	AACGTT	2 cut(s)	578, 985
PspEI	GGTNACC	1 cut(s)	684
PspFI	CCCAGC	1 cut(s)	310
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	2 cut(s)	177, 398
PteI	GCGCGC	1 cut(s)	60
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	3 cut(s)	368, 797, 935
RsaNI	GTAC	3 cut(s)	367, 796, 934
RseI	CAYNNNNRTG	2 cut(s)	71, 270
SaqAI	TTAA	2 cut(s)	30, 906
SatI	GCNGC	2 cut(s)	251, 774
Sau3AI	GATC	2 cut(s)	955, 1129
Sau96I	GGNCC	2 cut(s)	177, 398
SchI	GAGTC	2 cut(s)	71, 80
ScrFI	CCNGG	3 cut(s)	513, 629, 1048
SduI	GDGCHC	1 cut(s)	1073
SfaNI	GCATC	2 cut(s)	490, 581
SgsI	GGCGCGCC	1 cut(s)	60
SinI	GGWCC	2 cut(s)	177, 398
SmiMI	CAYNNNNRTG	2 cut(s)	71, 270
SmlI	CTYRAG	1 cut(s)	1066
SmoI	CTYRAG	1 cut(s)	1066
Sse9I	AATT	7 cut(s)	27, 181, 207, 386, 591, 805, 839
SsiI	CCGC	2 cut(s)	856, 875
SspI	AATATT	1 cut(s)	343
SspMI	CTAG	2 cut(s)	624, 921
StyD4I	CCNGG	3 cut(s)	511, 627, 1046
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	4 cut(s)	330, 361, 589, 1060
TaiI	ACGT	4 cut(s)	581, 603, 767, 988
TaqI	TCGA	2 cut(s)	9, 131
TasI	AATT	7 cut(s)	27, 181, 207, 386, 591, 805, 839
TatI	WGTACW	1 cut(s)	933
TfiI	GAWTC	4 cut(s)	11, 128, 155, 275
Tru1I	TTAA	2 cut(s)	30, 906
Tru9I	TTAA	2 cut(s)	30, 906
TscAI	CASTG	3 cut(s)	592, 783, 1078
TseI	GCWGC	2 cut(s)	250, 773
TspDTI	ATGAA	7 cut(s)	149, 314, 395, 852, 908, 1182, 1188
TspRI	CASTG	3 cut(s)	592, 783, 1078
VpaK11BI	GGWCC	2 cut(s)	177, 398
XapI	RAATTY	2 cut(s)	805, 839
XceI	RCATGY	1 cut(s)	652
XmnI	GAANNNNTTC	2 cut(s)	386, 899
XspI	CTAG	2 cut(s)	624, 921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.