Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0008722

Physical Location & Seq

Genomic Coordinates Forward (+)

818106 .. 821305

Gene Structure 3200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1007400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGACATTGATTCCGATTCCCAGAAAATCAATATCAAATCGCAGGAAGCAGGCGACCCGCCAGTTCCCATGGACTCTGAAAACTCGTCTGCCGTCAAAAATGATGGGAAAGAAAATGAGGAGCTTACTAATTCAATGAAGAAACTCCAAGTTGAGGAATCGTCTTCGGGATCAGGGCAGGCAGCAGTGTCCAACTTCAAGAGAAAACCGGTTATCGTAATCGTTGTGGGCATGGCAGGGAGTGGCAAGACAACCTTTATGCATCGGTTGGTTTCACACACACATGAATCGAACATTCGTGGCTATGTGATGAATCTTGACCCGGCTGTGATGACTCTCCCGTTTGGTGCCAACATTGACATAAGGGACACTGTTCGGTACAAGGAGGTGATGAAACAGTTCAATCTTGGACCAAATGGTGGGATTTTGACTTCACTCAACTTGTTTGCTACCAAGTTTGATGAGGTTATCTCTGTCATTGAGAAGCGAGCGGATCAGCTTGATTATGTTCTTGTGGACACTCCTGGTCAGATTGAGATATTCACTTGGTCGGCTTCTGGTGCTATCATCACAGAAGCATTTGCTTCAACATTTCCCACTGTAATCGCGTATGTGGTAGATACGCCTCGTTCAGCCAGCCCAGTTACTTTTATGAGCAATATGTTGTATGCTTGCAGTATCCTTTACAAGACAAGGCTGCCTCTTGTGTTGGCATTCAACAAGATTGACGTTGCTCAACATCAGTTTGCTTTGGAGTGGATGGAGGATTTTGAGACATTTCAAGCAGCAGTGAATGCAGATAGTTCATACTCTTCAAATTTGGCTCAGAGCCTCTCCCTTGTGTTGGATGAATTCTACAAGAACTTGCGGTCTGTTGGAGTGTCTGCGGTTACTGGTGCTGGAATGAAGGATTTCTTTAACACCATTGAAGCAAGTGCTGACGAGTACATGGAAACCTATAAGGCTGATCTGGACAAGAGACGGGCAGAGAAGCAACGATTAGAGGAGGAACACAGAAAGGAGAACATGGAGAAGTTAAGGAAGGATATGGAGAAATCCAGGGGAGAAACTGTGGTCTTGAGCACCGGTTTGAAGGACAAAGATGAGAGGGGTAAAGCCATGATGGATGAGGATGAAGAAGATGAAGCCGAAGAGGAAGATGAGGTTTTTTCTGAAGATGAGGAAGGTATAGATGAAGATGAAGACGAAGAGGTTGGCAGGTTCTCGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005874 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP_bind_1

Protein Analysis

411

Amino Acids

45.85

Weight (kDa)

4.53

Isoelectric Point (pI)

48.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	71 - 310	8.2e-07	Elongation factor Tu GTP binding domain
ATP_bind_1	PF03029	75 - 313	1.3e-81	Conserved hypothetical ATP binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21800 AT4G21800
fragaria_vesca	FvH4_4g12660 FvH4_4g12660
malus_domestica	MD12G1007400.v1.1 MD13G1150100.v1.1 MD14G1004700.v1.1 MD16G1150500.v1.1
prunus_persica	Prupe.1G114400_v2.0.a1
pyrus_communis	pycom12g00540 pycom14g00320 pycom16g12890
rosa_chinensis	RchiOBHm_Chr4g0411531
rosa_laevigata	RLG00000008348
rosa_multiflora	Rmu_sc0001868.1_g000001
rosa_roxburghii	Rroxscaffold_5G00356100
rosa_rugosa	Rorug04G0108000
rosa_samantha	Rh4AG168800 Rh4BG165400 Rh4CG180200 Rh4DG163100
rosa_wichuraiana	Rw0G020790 Rw4G014020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1209
AccB1I	GGYRCC	1 cut(s)	347
AccB7I	CCANNNNNTGG	1 cut(s)	419
AccBSI	CCGCTC	1 cut(s)	491
AccII	CGCG	1 cut(s)	608
AciI	CCGC	4 cut(s)	59, 491, 868, 887
AclWI	GGATC	2 cut(s)	178, 501
AcsI	RAATTY	2 cut(s)	817, 851
AcuI	CTGAAG	1 cut(s)	1194
AfaI	GTAC	2 cut(s)	380, 947
AfiI	CCNNNNNNNGG	3 cut(s)	154, 419, 844
AgeI	ACCGGT	2 cut(s)	208, 1085
AgsI	TTSAA	9 cut(s)	135, 199, 403, 588, 718, 782, 816, 929, 1093
AjnI	CCWGG	2 cut(s)	523, 1058
AluBI	AGCT	2 cut(s)	124, 499
AluI	AGCT	2 cut(s)	124, 499
Alw21I	GWGCWC	1 cut(s)	1085
Alw26I	GTCTC	2 cut(s)	767, 973
AlwI	GGATC	2 cut(s)	178, 501
ApeKI	GCWGC	3 cut(s)	182, 697, 785
ApoI	RAATTY	2 cut(s)	817, 851
AsiGI	ACCGGT	2 cut(s)	208, 1085
Asp700I	GAANNNNTTC	2 cut(s)	398, 911
AspS9I	GGNCC	1 cut(s)	410
AsuC2I	CCSGG	1 cut(s)	323
AsuHPI	GGTGA	1 cut(s)	400
AvaII	GGWCC	1 cut(s)	410
BanI	GGYRCC	1 cut(s)	347
BbsI	GAAGAC	2 cut(s)	156, 1209
Bbv12I	GWGCWC	1 cut(s)	1085
BbvI	GCAGC	3 cut(s)	194, 684, 797
BccI	CCATC	3 cut(s)	98, 754, 1117
BceAI	ACGGC	1 cut(s)	77
BciT130I	CCWGG	2 cut(s)	525, 1060
BciVI	GTATCC	1 cut(s)	689
BcnI	CCSGG	1 cut(s)	323
BcoDI	GTCTC	2 cut(s)	767, 973
BfuAI	ACCTGC	1 cut(s)	1209
BfuI	GTATCC	1 cut(s)	689
BisI	GCNGC	3 cut(s)	183, 698, 786
BlsI	GCNGC	3 cut(s)	184, 699, 787
Bme1390I	CCNGG	3 cut(s)	323, 525, 1060
Bme18I	GGWCC	1 cut(s)	410
BmgT120I	GGNCC	1 cut(s)	410
BmiI	GGNNCC	1 cut(s)	349
BmrFI	CCNGG	3 cut(s)	323, 525, 1060
BmrI	ACTGGG	1 cut(s)	635
BmsI	GCATC	1 cut(s)	271
BmuI	ACTGGG	1 cut(s)	635
BpiI	GAAGAC	2 cut(s)	156, 1209
BplI	GAGNNNNNCTC	2 cut(s)	455, 487
BpuEI	CTTGAG	1 cut(s)	1099
BpuMI	CCSGG	1 cut(s)	323
BsaJI	CCNNGG	2 cut(s)	69, 1059
BsaWI	WCCGGW	2 cut(s)	208, 1085
BsaXI	ACNNNNNCTCC	2 cut(s)	1056, 1086
Bsc4I	CCNNNNNNNGG	3 cut(s)	154, 419, 844
Bse118I	RCCGGY	2 cut(s)	208, 1085
Bse1I	ACTGG	3 cut(s)	62, 641, 898
BseBI	CCWGG	2 cut(s)	525, 1060
BseDI	CCNNGG	2 cut(s)	69, 1059
BseGI	GGATG	4 cut(s)	765, 853, 1132, 1138
BseLI	CCNNNNNNNGG	3 cut(s)	154, 419, 844
BseMII	CTCAG	1 cut(s)	839
BseNI	ACTGG	3 cut(s)	62, 641, 898
BseRI	GAGGAG	2 cut(s)	134, 1019
BseXI	GCAGC	3 cut(s)	194, 684, 797
Bsh1236I	CGCG	1 cut(s)	608
BshNI	GGYRCC	1 cut(s)	347
BshTI	ACCGGT	2 cut(s)	208, 1085
BsiHKAI	GWGCWC	1 cut(s)	1085
BsiSI	CCGG	3 cut(s)	209, 323, 1086
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	3 cut(s)	154, 419, 844
BsmAI	GTCTC	2 cut(s)	767, 973
BsmBI	CGTCTC	1 cut(s)	973
BsmFI	GGGAC	1 cut(s)	380
BsmI	GAATGC	2 cut(s)	713, 799
Bsp1286I	GDGCHC	1 cut(s)	1085
Bsp143I	GATC	3 cut(s)	170, 493, 967
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	4 cut(s)	59, 491, 868, 887
BspCNI	CTCAG	1 cut(s)	838
BspFNI	CGCG	1 cut(s)	608
BspLI	GGNNCC	1 cut(s)	349
BspMI	ACCTGC	1 cut(s)	1209
BspPI	GGATC	2 cut(s)	178, 501
BspT107I	GGYRCC	1 cut(s)	347
BsrBI	CCGCTC	1 cut(s)	491
BsrFI	RCCGGY	2 cut(s)	208, 1085
BsrI	ACTGG	3 cut(s)	62, 641, 898
BssAI	RCCGGY	2 cut(s)	208, 1085
BssECI	CCNNGG	2 cut(s)	69, 1059
BssMI	GATC	3 cut(s)	170, 493, 967
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	2 cut(s)	525, 1060
Bst4CI	ACNGT	4 cut(s)	373, 399, 601, 1072
Bst6I	CTCTTC	3 cut(s)	817, 1146, 1203
BstAPI	GCANNNNNTGC	1 cut(s)	794
BstC8I	GCNNGC	5 cut(s)	52, 180, 489, 637, 673
BstDEI	CTNAG	1 cut(s)	825
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	4 cut(s)	765, 853, 1132, 1138
BstFNI	CGCG	1 cut(s)	608
BstKTI	GATC	3 cut(s)	173, 496, 970
BstMAI	GTCTC	2 cut(s)	767, 973
BstMBI	GATC	3 cut(s)	170, 493, 967
BstMWI	GCNNNNNNNGC	2 cut(s)	560, 794
BstNI	CCWGG	2 cut(s)	525, 1060
BstSCI	CCNGG	3 cut(s)	321, 523, 1058
BstUI	CGCG	1 cut(s)	608
BstV1I	GCAGC	3 cut(s)	194, 684, 797
BstV2I	GAAGAC	2 cut(s)	156, 1209
BsuI	GTATCC	1 cut(s)	689
BtgI	CCRYGG	1 cut(s)	69
BtsCI	GGATG	4 cut(s)	765, 853, 1132, 1138
BtsI	GCAGTG	2 cut(s)	192, 795
BtsIMutI	CAGTG	4 cut(s)	192, 369, 597, 795
BveI	ACCTGC	1 cut(s)	1209
Cac8I	GCNNGC	5 cut(s)	52, 180, 489, 637, 673
Cfr10I	RCCGGY	2 cut(s)	208, 1085
Cfr13I	GGNCC	1 cut(s)	410
Csp6I	GTAC	2 cut(s)	379, 946
CspAI	ACCGGT	2 cut(s)	208, 1085
CviAII	CATG	6 cut(s)	70, 232, 284, 949, 1027, 1120
CviQI	GTAC	2 cut(s)	379, 946
DdeI	CTNAG	1 cut(s)	825
DpnI	GATC	3 cut(s)	172, 495, 969
DpnII	GATC	3 cut(s)	170, 493, 967
Eam1104I	CTCTTC	3 cut(s)	817, 1146, 1203
EarI	CTCTTC	3 cut(s)	817, 1146, 1203
Eco130I	CCWWGG	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	410
Eco57I	CTGAAG	1 cut(s)	1194
EcoRI	GAATTC	1 cut(s)	851
EcoRII	CCWGG	2 cut(s)	523, 1058
EcoT14I	CCWWGG	1 cut(s)	69
EcoT22I	ATGCAT	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	69
Esp3I	CGTCTC	1 cut(s)	973
FaeI	CATG	6 cut(s)	73, 235, 287, 952, 1030, 1123
FalI	AAGNNNNNCTT	4 cut(s)	239, 271, 899, 931
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	6 cut(s)	69, 231, 283, 948, 1026, 1119
FauI	CCCGC	1 cut(s)	66
Fnu4HI	GCNGC	3 cut(s)	183, 698, 786
FokI	GGATG	4 cut(s)	772, 860, 1139, 1145
Fsp4HI	GCNGC	3 cut(s)	183, 698, 786
GluI	GCNGC	3 cut(s)	183, 698, 786
HapII	CCGG	3 cut(s)	209, 323, 1086
Hin1II	CATG	6 cut(s)	73, 235, 287, 952, 1030, 1123
HinfI	GANTC	7 cut(s)	11, 17, 74, 158, 287, 313, 334
HpaII	CCGG	3 cut(s)	209, 323, 1086
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	1 cut(s)	517
Hpy188I	TCNGA	5 cut(s)	16, 79, 531, 828, 1174
Hpy188III	TCNNGA	5 cut(s)	168, 199, 317, 971, 1078
Hpy8I	GTNNAC	1 cut(s)	517
HpyAV	CCTTC	4 cut(s)	901, 1036, 1087, 1178
HpyCH4III	ACNGT	4 cut(s)	373, 399, 601, 1072
HpyCH4IV	ACGT	1 cut(s)	729
HpyCH4V	TGCA	3 cut(s)	262, 675, 797
HpyF10VI	GCNNNNNNNGC	2 cut(s)	560, 794
HpyF3I	CTNAG	1 cut(s)	825
HpySE526I	ACGT	1 cut(s)	729
Hsp92II	CATG	6 cut(s)	73, 235, 287, 952, 1030, 1123
Kzo9I	GATC	3 cut(s)	170, 493, 967
LmnI	GCTCC	1 cut(s)	121
Lsp1109I	GCAGC	3 cut(s)	194, 684, 797
LweI	GCATC	1 cut(s)	271
MaeII	ACGT	1 cut(s)	729
MaeIII	GTNAC	2 cut(s)	643, 889
MalI	GATC	3 cut(s)	172, 495, 969
MbiI	CCGCTC	1 cut(s)	491
MboI	GATC	3 cut(s)	170, 493, 967
MhlI	GDGCHC	1 cut(s)	1085
MluCI	AATT	3 cut(s)	130, 817, 851
MlyI	GAGTC	2 cut(s)	68, 328
MmeI	TCCRAC	3 cut(s)	216, 825, 856
Mph1103I	ATGCAT	1 cut(s)	264
MroXI	GAANNNNTTC	2 cut(s)	398, 911
MseI	TTAA	2 cut(s)	918, 1037
MslI	CAYNNNNRTG	1 cut(s)	282
MspI	CCGG	3 cut(s)	209, 323, 1086
MspR9I	CCNGG	3 cut(s)	323, 525, 1060
Mva1269I	GAATGC	2 cut(s)	713, 799
MvaI	CCWGG	2 cut(s)	525, 1060
MvnI	CGCG	1 cut(s)	608
MwoI	GCNNNNNNNGC	2 cut(s)	560, 794
NciI	CCSGG	1 cut(s)	323
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	3 cut(s)	170, 493, 967
NlaIII	CATG	6 cut(s)	73, 235, 287, 952, 1030, 1123
NlaIV	GGNNCC	1 cut(s)	349
NsiI	ATGCAT	1 cut(s)	264
PctI	GAATGC	2 cut(s)	713, 799
PdmI	GAANNNNTTC	2 cut(s)	398, 911
PfeI	GAWTC	5 cut(s)	11, 17, 158, 287, 313
PflMI	CCANNNNNTGG	1 cut(s)	419
PinAI	ACCGGT	2 cut(s)	208, 1085
PkrI	GCNGC	3 cut(s)	184, 699, 787
PleI	GAGTC	2 cut(s)	68, 328
PpsI	GAGTC	2 cut(s)	68, 328
Psp6I	CCWGG	2 cut(s)	523, 1058
PspGI	CCWGG	2 cut(s)	523, 1058
PspN4I	GGNNCC	1 cut(s)	349
PspPI	GGNCC	1 cut(s)	410
RsaI	GTAC	2 cut(s)	380, 947
RsaNI	GTAC	2 cut(s)	379, 946
RseI	CAYNNNNRTG	1 cut(s)	282
SaqAI	TTAA	2 cut(s)	918, 1037
SatI	GCNGC	3 cut(s)	183, 698, 786
Sau3AI	GATC	3 cut(s)	170, 493, 967
Sau96I	GGNCC	1 cut(s)	410
SchI	GAGTC	2 cut(s)	68, 328
ScrFI	CCNGG	3 cut(s)	323, 525, 1060
SduI	GDGCHC	1 cut(s)	1085
SfaNI	GCATC	1 cut(s)	271
SinI	GGWCC	1 cut(s)	410
SmiMI	CAYNNNNRTG	1 cut(s)	282
SmlI	CTYRAG	1 cut(s)	1078
SmoI	CTYRAG	1 cut(s)	1078
Sse9I	AATT	3 cut(s)	130, 817, 851
SsiI	CCGC	4 cut(s)	59, 491, 868, 887
StyD4I	CCNGG	3 cut(s)	321, 523, 1058
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	4 cut(s)	373, 399, 601, 1072
TaiI	ACGT	1 cut(s)	732
TaqI	TCGA	1 cut(s)	290
TasI	AATT	3 cut(s)	130, 817, 851
TatI	WGTACW	1 cut(s)	945
TfiI	GAWTC	5 cut(s)	11, 17, 158, 287, 313
Tru1I	TTAA	2 cut(s)	918, 1037
Tru9I	TTAA	2 cut(s)	918, 1037
TscAI	CASTG	4 cut(s)	192, 376, 604, 795
TseI	GCWGC	3 cut(s)	182, 697, 785
TspRI	CASTG	4 cut(s)	192, 376, 604, 795
Van91I	CCANNNNNTGG	1 cut(s)	419
VpaK11BI	GGWCC	1 cut(s)	410
XapI	RAATTY	2 cut(s)	817, 851
XmnI	GAANNNNTTC	2 cut(s)	398, 911
Zsp2I	ATGCAT	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.