Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0008722

Physical Location & Seq

Genomic Coordinates Forward (+)

512130 .. 522372

Gene Structure 10243 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1004700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGCATCGGTTGGTTTCGCACACACATGAATCCAACATTCGTGGATACGTGATGAATCTCGACCCAGCTGTGATGACTCTCCCGTTTGGTGCGAACATTGACATACGGGATACTGTTCGGTACAAGGAGGTGATGAAACAGTTCAATCTTGGACCAAATGGTGGGATTTTGACTTCACTCAACTTGTTTGCTACCAAGTTTGATGAGGTTGTCTCAGTCATTGAGAAGCGAGCGGATCAGCTTGATTATGTTCTTGTGGATACTCCTGAAGCATTTGCTTCAACGTTTCCCACTGTAATCGCTTATGTGGTAGATACGCCTCGTTCAGCTAGCCCTGTCACTTTTATGAGCAATATGCTGTATGCTTGTAGTATTCTTTACAAGACAAGGCTGCCCCTTGTGTTGGCATTCAACAAAATTGACGTTGCTCAACATCAATTTGCTTTGGAGTGGATGGAGGATTTTGAGACATTTCAAGCAGCAGTGAGTGCAGATAGTTCATACTCTTCAAATTTGGCTCAGAGCCTCTCCCTTGTGTTGGATGAATTCTATAAGAACTTGCAGTCTGTTGGAGTGTCTGCGGTTAGTGGTGCTGGAATGAAGGATTTCTTTAACGCCATTGAAGCAAGTGCTGACGAGTACATGGAAACCTATAAGGCTGATCTGGACAAGAGACGGGCAGAGAAGCAACGATTAGAGGAGGAACACAGAAAGGAGAACATGGAGAAGTTGAGGAAGGATATGGAGAAATCCAGGGGAGAAACTGTGGTCTTGAGCACTGGTTTGAAGGACAAAGATGAGAGGGGTAATGCCATGATGGATGAGGATGAAGAAGATGAAGTCGAAGAGGAAGATGAGGTTTTTTCTGAAGACGAGGAAGGTATAGATGAAGATGAAGACGAAGAGGTTGGCAGGTTCTCGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005874 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP_bind_1

Protein Analysis

309

Amino Acids

34.99

Weight (kDa)

4.44

Isoelectric Point (pI)

49.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP_bind_1	PF03029	2 - 89	3.5e-24	Conserved hypothetical ATP binding protein
ATP_bind_1	PF03029	91 - 211	1.3e-29	Conserved hypothetical ATP binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21800 AT4G21800
fragaria_vesca	FvH4_4g12660 FvH4_4g12660
malus_domestica	MD12G1007400.v1.1 MD13G1150100.v1.1 MD14G1004700.v1.1 MD16G1150500.v1.1
prunus_persica	Prupe.1G114400_v2.0.a1
pyrus_communis	pycom12g00540 pycom14g00320 pycom16g12890
rosa_chinensis	RchiOBHm_Chr4g0411531
rosa_laevigata	RLG00000008348
rosa_multiflora	Rmu_sc0001868.1_g000001
rosa_roxburghii	Rroxscaffold_5G00356100
rosa_rugosa	Rorug04G0108000
rosa_samantha	Rh4AG168800 Rh4BG165400 Rh4CG180200 Rh4DG163100
rosa_wichuraiana	Rw0G020790 Rw4G014020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	903
AccB7I	CCANNNNNTGG	1 cut(s)	161
AccBSI	CCGCTC	1 cut(s)	233
AciI	CCGC	2 cut(s)	233, 581
AclI	AACGTT	1 cut(s)	284
AclWI	GGATC	1 cut(s)	243
AcsI	RAATTY	2 cut(s)	511, 545
AcuI	CTGAAG	2 cut(s)	288, 888
AfaI	GTAC	2 cut(s)	122, 641
AfiI	CCNNNNNNNGG	3 cut(s)	161, 403, 538
AgsI	TTSAA	7 cut(s)	145, 282, 412, 476, 510, 623, 787
AjnI	CCWGG	1 cut(s)	752
AluBI	AGCT	3 cut(s)	68, 241, 329
AluI	AGCT	3 cut(s)	68, 241, 329
Alw21I	GWGCWC	1 cut(s)	779
Alw26I	GTCTC	3 cut(s)	217, 461, 667
AlwI	GGATC	1 cut(s)	243
ApeKI	GCWGC	2 cut(s)	391, 479
ApoI	RAATTY	2 cut(s)	511, 545
Asp700I	GAANNNNTTC	2 cut(s)	140, 605
AspS9I	GGNCC	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	142
AsuNHI	GCTAGC	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	152
BbsI	GAAGAC	2 cut(s)	876, 903
Bbv12I	GWGCWC	1 cut(s)	779
BbvI	GCAGC	2 cut(s)	378, 491
BccI	CCATC	2 cut(s)	448, 811
BciT130I	CCWGG	1 cut(s)	754
BciVI	GTATCC	3 cut(s)	38, 103, 253
BcoDI	GTCTC	3 cut(s)	217, 461, 667
BfaI	CTAG	1 cut(s)	330
BfuAI	ACCTGC	1 cut(s)	903
BfuI	GTATCC	3 cut(s)	38, 103, 253
BisI	GCNGC	2 cut(s)	392, 480
BlsI	GCNGC	2 cut(s)	393, 481
Bme1390I	CCNGG	1 cut(s)	754
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	152
BmrFI	CCNGG	1 cut(s)	754
BmsI	GCATC	1 cut(s)	13
BmtI	GCTAGC	1 cut(s)	333
BpiI	GAAGAC	2 cut(s)	876, 903
BplI	GAGNNNNNCTC	2 cut(s)	197, 229
BpuEI	CTTGAG	1 cut(s)	793
BsaAI	YACGTR	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	753
BsaXI	ACNNNNNCTCC	2 cut(s)	750, 780
Bsc4I	CCNNNNNNNGG	3 cut(s)	161, 403, 538
Bse1I	ACTGG	1 cut(s)	784
BseBI	CCWGG	1 cut(s)	754
BseDI	CCNNGG	1 cut(s)	753
BseGI	GGATG	4 cut(s)	459, 547, 826, 832
BseLI	CCNNNNNNNGG	3 cut(s)	161, 403, 538
BseMII	CTCAG	2 cut(s)	228, 533
BseNI	ACTGG	1 cut(s)	784
BseRI	GAGGAG	1 cut(s)	713
BseXI	GCAGC	2 cut(s)	378, 491
BseYI	CCCAGC	1 cut(s)	64
BsgI	GTGCAG	1 cut(s)	510
BsiHKAI	GWGCWC	1 cut(s)	779
BslI	CCNNNNNNNGG	3 cut(s)	161, 403, 538
BsmAI	GTCTC	3 cut(s)	217, 461, 667
BsmBI	CGTCTC	1 cut(s)	667
BsmI	GAATGC	1 cut(s)	407
Bsp1286I	GDGCHC	1 cut(s)	779
Bsp143I	GATC	2 cut(s)	235, 661
BspACI	CCGC	2 cut(s)	233, 581
BspCNI	CTCAG	2 cut(s)	227, 532
BspMI	ACCTGC	1 cut(s)	903
BspOI	GCTAGC	1 cut(s)	333
BspPI	GGATC	1 cut(s)	243
BsrBI	CCGCTC	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	784
BssECI	CCNNGG	1 cut(s)	753
BssMI	GATC	2 cut(s)	235, 661
Bst2UI	CCWGG	1 cut(s)	754
Bst4CI	ACNGT	4 cut(s)	115, 141, 295, 766
Bst6I	CTCTTC	3 cut(s)	511, 840, 897
BstAPI	GCANNNNNTGC	1 cut(s)	488
BstBAI	YACGTR	1 cut(s)	49
BstC8I	GCNNGC	2 cut(s)	231, 331
BstDEI	CTNAG	2 cut(s)	214, 519
BstF5I	GGATG	4 cut(s)	459, 547, 826, 832
BstKTI	GATC	2 cut(s)	238, 664
BstMAI	GTCTC	3 cut(s)	217, 461, 667
BstMBI	GATC	2 cut(s)	235, 661
BstMWI	GCNNNNNNNGC	2 cut(s)	488, 623
BstNI	CCWGG	1 cut(s)	754
BstSCI	CCNGG	1 cut(s)	752
BstV1I	GCAGC	2 cut(s)	378, 491
BstV2I	GAAGAC	2 cut(s)	876, 903
BsuI	GTATCC	3 cut(s)	38, 103, 253
BtsCI	GGATG	4 cut(s)	459, 547, 826, 832
BtsI	GCAGTG	1 cut(s)	489
BtsIMutI	CAGTG	3 cut(s)	291, 489, 777
BveI	ACCTGC	1 cut(s)	903
Cac8I	GCNNGC	2 cut(s)	231, 331
Cfr13I	GGNCC	1 cut(s)	152
Csp6I	GTAC	2 cut(s)	121, 640
CspCI	CAANNNNNGTGG	2 cut(s)	22, 57
CviAII	CATG	4 cut(s)	26, 643, 721, 814
CviJI	RGCY	8 cut(s)	68, 241, 329, 333, 391, 518, 525, 659
CviKI_1	RGCY	8 cut(s)	68, 241, 329, 333, 391, 518, 525, 659
CviQI	GTAC	2 cut(s)	121, 640
DdeI	CTNAG	2 cut(s)	214, 519
DpnI	GATC	2 cut(s)	237, 663
DpnII	GATC	2 cut(s)	235, 661
Eam1104I	CTCTTC	3 cut(s)	511, 840, 897
EarI	CTCTTC	3 cut(s)	511, 840, 897
Eco47I	GGWCC	1 cut(s)	152
Eco57I	CTGAAG	2 cut(s)	288, 888
EcoRI	GAATTC	1 cut(s)	545
EcoRII	CCWGG	1 cut(s)	752
EcoT22I	ATGCAT	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	667
FaeI	CATG	4 cut(s)	29, 646, 724, 817
FalI	AAGNNNNNCTT	2 cut(s)	593, 625
FatI	CATG	4 cut(s)	25, 642, 720, 813
Fnu4HI	GCNGC	2 cut(s)	392, 480
FokI	GGATG	4 cut(s)	466, 554, 833, 839
Fsp4HI	GCNGC	2 cut(s)	392, 480
FspBI	CTAG	1 cut(s)	330
GluI	GCNGC	2 cut(s)	392, 480
GsaI	CCCAGC	1 cut(s)	68
Hin1II	CATG	4 cut(s)	29, 646, 724, 817
HinfI	GANTC	3 cut(s)	29, 55, 76
HphI	GGTGA	1 cut(s)	142
Hpy188I	TCNGA	2 cut(s)	522, 868
Hpy188III	TCNNGA	4 cut(s)	59, 266, 665, 772
HpyAV	CCTTC	4 cut(s)	595, 730, 781, 872
HpyCH4III	ACNGT	4 cut(s)	115, 141, 295, 766
HpyCH4IV	ACGT	3 cut(s)	48, 284, 423
HpyCH4V	TGCA	3 cut(s)	4, 491, 562
HpyF10VI	GCNNNNNNNGC	2 cut(s)	488, 623
HpyF3I	CTNAG	2 cut(s)	214, 519
HpySE526I	ACGT	3 cut(s)	48, 284, 423
Hsp92II	CATG	4 cut(s)	29, 646, 724, 817
Kzo9I	GATC	2 cut(s)	235, 661
LpnPI	CCDG	9 cut(s)	78, 279, 348, 579, 650, 739, 765, 766, 898
Lsp1109I	GCAGC	2 cut(s)	378, 491
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	330
MaeII	ACGT	3 cut(s)	48, 284, 423
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	2 cut(s)	237, 663
MbiI	CCGCTC	1 cut(s)	233
MboI	GATC	2 cut(s)	235, 661
MboII	GAAGA	9 cut(s)	498, 842, 845, 857, 863, 881, 902, 908, 914
MhlI	GDGCHC	1 cut(s)	779
MluCI	AATT	4 cut(s)	417, 437, 511, 545
MlyI	GAGTC	1 cut(s)	70
MmeI	TCCRAC	3 cut(s)	57, 519, 550
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	2 cut(s)	140, 605
MseI	TTAA	1 cut(s)	612
MslI	CAYNNNNRTG	2 cut(s)	24, 344
MspA1I	CMGCKG	1 cut(s)	68
MspR9I	CCNGG	1 cut(s)	754
Mva1269I	GAATGC	1 cut(s)	407
MvaI	CCWGG	1 cut(s)	754
MwoI	GCNNNNNNNGC	2 cut(s)	488, 623
NdeII	GATC	2 cut(s)	235, 661
NheI	GCTAGC	1 cut(s)	329
NlaIII	CATG	4 cut(s)	29, 646, 724, 817
NmuCI	GTSAC	1 cut(s)	337
NsiI	ATGCAT	1 cut(s)	6
PctI	GAATGC	1 cut(s)	407
PdmI	GAANNNNTTC	2 cut(s)	140, 605
PfeI	GAWTC	2 cut(s)	29, 55
PflMI	CCANNNNNTGG	1 cut(s)	161
PkrI	GCNGC	2 cut(s)	393, 481
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
Ppu21I	YACGTR	1 cut(s)	49
Psp1406I	AACGTT	1 cut(s)	284
Psp6I	CCWGG	1 cut(s)	752
PspFI	CCCAGC	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	752
PspPI	GGNCC	1 cut(s)	152
PvuII	CAGCTG	1 cut(s)	68
RsaI	GTAC	2 cut(s)	122, 641
RsaNI	GTAC	2 cut(s)	121, 640
RseI	CAYNNNNRTG	2 cut(s)	24, 344
SaqAI	TTAA	1 cut(s)	612
SatI	GCNGC	2 cut(s)	392, 480
Sau3AI	GATC	2 cut(s)	235, 661
Sau96I	GGNCC	1 cut(s)	152
SchI	GAGTC	1 cut(s)	70
ScrFI	CCNGG	1 cut(s)	754
SduI	GDGCHC	1 cut(s)	779
SfaNI	GCATC	1 cut(s)	13
SinI	GGWCC	1 cut(s)	152
SmiMI	CAYNNNNRTG	2 cut(s)	24, 344
SmlI	CTYRAG	1 cut(s)	772
SmoI	CTYRAG	1 cut(s)	772
Sse9I	AATT	4 cut(s)	417, 437, 511, 545
SsiI	CCGC	2 cut(s)	233, 581
SspMI	CTAG	1 cut(s)	330
StyD4I	CCNGG	1 cut(s)	752
TaaI	ACNGT	4 cut(s)	115, 141, 295, 766
TaiI	ACGT	3 cut(s)	51, 287, 426
TaqI	TCGA	2 cut(s)	60, 843
TasI	AATT	4 cut(s)	417, 437, 511, 545
TatI	WGTACW	1 cut(s)	639
TfiI	GAWTC	2 cut(s)	29, 55
Tru1I	TTAA	1 cut(s)	612
Tru9I	TTAA	1 cut(s)	612
TscAI	CASTG	3 cut(s)	298, 489, 784
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	2 cut(s)	391, 479
Tsp45I	GTSAC	1 cut(s)	337
TspRI	CASTG	3 cut(s)	298, 489, 784
Van91I	CCANNNNNTGG	1 cut(s)	161
VpaK11BI	GGWCC	1 cut(s)	152
XapI	RAATTY	2 cut(s)	511, 545
XmnI	GAANNNNTTC	2 cut(s)	140, 605
XspI	CTAG	1 cut(s)	330
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.