Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0008722

Physical Location & Seq

Genomic Coordinates Forward (+)

503210 .. 505920

Gene Structure 2711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g00540.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGACATTGATTCCGATTCCCAGAAAATCAATATCAAATCGCAGGAAGCAGGCGACCCGCCAGTTCCCATGGACTCTGAAAACTCGTCTGCCATCAAACTTTTTGTGTTTGATTTTGCTCAGAAGAATGATGGGAAAGAAAATGAGGAGCTTACTAATTCAATGAAGAAACTCCAAGTTGAGGAATCGTCTTCTGGATCAGGGCAGGCATCAGTGTCCAACTTCAAGAGAAAACCGGTTATTGTAATCGTTGTGGGCATGGCAGGGAGTGGCAAGACAACCTTTATGCATCGGTTGGTTTCACACACACATGAATCGAACATTCGTGGCTATGTGATGAATCTCGACCCGGCTGTGATGACTCTCCCGTTTGGTGCCAACATTGACATAAGGGATACTGTTCGGTACAAGGAGGTGATGAAACAGTTCAATCTTGGACCAAATGGTGGGATTTTGACTTCACTCAACTTGTTTGCTACCAAGTTTGATGAGGTTGTCTCTGTCATTGAGAAGCGAGCGGATCAGCTTGATTATGTTCTTGTGGACACTCCCGGTCAGATTGAGATATTCACTTGGTCGGCTTCTGGTGCTATCATCACAGAAGCATTTGCTTCAACATTTCCCACTGTAATCGCATATGTGGTAGATACGCCTCGTTCAGCTAGTCCAGTTACTTTTATGAGCAATATGTTGTACGCTTGCAGTATCCTTTACAAGACAAGGCTGCCTCTTGTGTTGGCATTCAACAAGATTGACGTTGCTCAACATCAGTTTGCTTTGGAGTGGATGGAGGATTTTGAGACATTTCAAGCAGCGGTGAGTGCAGATAGTTCATACTCTTCAAATTTGGCTCAGAGCCTCTCCCTTGTGTTGGATGAATTCTATAAGAACTTGCGGTCTGTTGGAGTGTCTGCGGTTACTGGTGCTGGAATGAAGGATTTCTTTAACGCCATTGAAGCAAGTACTGACGAATACATGGAAACTTATAAGGCTGATCTGGACAAGAGACGGGCAGAGAAGCAACGATTAGAGGAGGACCACAGAAAGGAGAACATGGAGAAGTTAAGGAAGGATATGGAGAAATCCAGGGGAGAAACTGTGGTCTTGAGCACCGGTTTGAAGGACAAAGATGAGAGGGGTAAAGCCATGATGGATGAGGCTGAAGAAGATGAAGTTGAAGAGGAAGATGAGGTTTTTTCTGAAGATGAGGAGGGTATAGATGAAGATGAAGACGAAGAGGTTGGCAGGTTCTCATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005874 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP_bind_1

Protein Analysis

420

Amino Acids

46.9

Weight (kDa)

4.55

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21800 AT4G21800
fragaria_vesca	FvH4_4g12660 FvH4_4g12660
malus_domestica	MD12G1007400.v1.1 MD13G1150100.v1.1 MD14G1004700.v1.1 MD16G1150500.v1.1
prunus_persica	Prupe.1G114400_v2.0.a1
pyrus_communis	pycom12g00540 pycom14g00320 pycom16g12890
rosa_chinensis	RchiOBHm_Chr4g0411531
rosa_laevigata	RLG00000008348
rosa_multiflora	Rmu_sc0001868.1_g000001
rosa_roxburghii	Rroxscaffold_5G00356100
rosa_rugosa	Rorug04G0108000
rosa_samantha	Rh4AG168800 Rh4BG165400 Rh4CG180200 Rh4DG163100
rosa_wichuraiana	Rw0G020790 Rw4G014020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	987
Acc36I	ACCTGC	1 cut(s)	1236
AccB1I	GGYRCC	1 cut(s)	374
AccB7I	CCANNNNNTGG	1 cut(s)	446
AccBSI	CCGCTC	1 cut(s)	518
AciI	CCGC	5 cut(s)	59, 518, 815, 895, 914
AclWI	GGATC	2 cut(s)	205, 528
AcsI	RAATTY	2 cut(s)	844, 878
AcuI	CTGAAG	2 cut(s)	1182, 1221
AfaI	GTAC	3 cut(s)	407, 695, 964
AfiI	CCNNNNNNNGG	4 cut(s)	181, 446, 871, 1045
AgeI	ACCGGT	2 cut(s)	235, 1112
AjnI	CCWGG	1 cut(s)	1085
AluBI	AGCT	3 cut(s)	151, 526, 662
AluI	AGCT	3 cut(s)	151, 526, 662
Alw21I	GWGCWC	1 cut(s)	1112
Alw26I	GTCTC	3 cut(s)	502, 794, 1000
AlwI	GGATC	2 cut(s)	205, 528
ApeKI	GCWGC	2 cut(s)	724, 812
ApoI	RAATTY	2 cut(s)	844, 878
AsiGI	ACCGGT	2 cut(s)	235, 1112
Asp700I	GAANNNNTTC	2 cut(s)	425, 938
AspS9I	GGNCC	2 cut(s)	437, 1036
AsuC2I	CCSGG	2 cut(s)	350, 552
AsuHPI	GGTGA	2 cut(s)	427, 829
AvaII	GGWCC	2 cut(s)	437, 1036
BanI	GGYRCC	1 cut(s)	374
BbsI	GAAGAC	2 cut(s)	183, 1236
Bbv12I	GWGCWC	1 cut(s)	1112
BbvI	GCAGC	2 cut(s)	711, 824
BccI	CCATC	4 cut(s)	101, 125, 781, 1144
BciT130I	CCWGG	1 cut(s)	1087
BciVI	GTATCC	2 cut(s)	388, 716
BcnI	CCSGG	2 cut(s)	350, 552
BcoDI	GTCTC	3 cut(s)	502, 794, 1000
BfaI	CTAG	1 cut(s)	663
BfuAI	ACCTGC	1 cut(s)	1236
BfuI	GTATCC	2 cut(s)	388, 716
BisI	GCNGC	2 cut(s)	725, 813
BlsI	GCNGC	2 cut(s)	726, 814
BmcAI	AGTACT	1 cut(s)	964
Bme1390I	CCNGG	3 cut(s)	350, 552, 1087
Bme18I	GGWCC	2 cut(s)	437, 1036
BmgT120I	GGNCC	2 cut(s)	437, 1036
BmiI	GGNNCC	1 cut(s)	376
BmrFI	CCNGG	3 cut(s)	350, 552, 1087
BmsI	GCATC	2 cut(s)	218, 298
BpiI	GAAGAC	2 cut(s)	183, 1236
BplI	GAGNNNNNCTC	2 cut(s)	482, 514
BpuEI	CTTGAG	1 cut(s)	1126
BpuMI	CCSGG	2 cut(s)	350, 552
BsaJI	CCNNGG	2 cut(s)	69, 1086
BsaWI	WCCGGW	2 cut(s)	235, 1112
BsaXI	ACNNNNNCTCC	2 cut(s)	1083, 1113
Bsc4I	CCNNNNNNNGG	4 cut(s)	181, 446, 871, 1045
Bse118I	RCCGGY	2 cut(s)	235, 1112
Bse1I	ACTGG	3 cut(s)	62, 668, 925
BseBI	CCWGG	1 cut(s)	1087
BseDI	CCNNGG	2 cut(s)	69, 1086
BseGI	GGATG	3 cut(s)	792, 880, 1159
BseLI	CCNNNNNNNGG	4 cut(s)	181, 446, 871, 1045
BseMII	CTCAG	2 cut(s)	134, 866
BseNI	ACTGG	3 cut(s)	62, 668, 925
BseRI	GAGGAG	3 cut(s)	161, 1046, 1223
BseXI	GCAGC	2 cut(s)	711, 824
BsgI	GTGCAG	1 cut(s)	843
BshNI	GGYRCC	1 cut(s)	374
BshTI	ACCGGT	2 cut(s)	235, 1112
BsiHKAI	GWGCWC	1 cut(s)	1112
BsiSI	CCGG	4 cut(s)	236, 350, 552, 1113
BslI	CCNNNNNNNGG	4 cut(s)	181, 446, 871, 1045
BsmAI	GTCTC	3 cut(s)	502, 794, 1000
BsmBI	CGTCTC	1 cut(s)	1000
BsmI	GAATGC	1 cut(s)	740
Bsp1286I	GDGCHC	1 cut(s)	1112
Bsp143I	GATC	3 cut(s)	197, 520, 994
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	5 cut(s)	59, 518, 815, 895, 914
BspCNI	CTCAG	2 cut(s)	133, 865
BspLI	GGNNCC	1 cut(s)	376
BspMI	ACCTGC	1 cut(s)	1236
BspPI	GGATC	2 cut(s)	205, 528
BspT107I	GGYRCC	1 cut(s)	374
BsrBI	CCGCTC	1 cut(s)	518
BsrFI	RCCGGY	2 cut(s)	235, 1112
BsrI	ACTGG	3 cut(s)	62, 668, 925
BssAI	RCCGGY	2 cut(s)	235, 1112
BssECI	CCNNGG	2 cut(s)	69, 1086
BssMI	GATC	3 cut(s)	197, 520, 994
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	1087
Bst4CI	ACNGT	4 cut(s)	400, 426, 628, 1099
Bst6I	CTCTTC	3 cut(s)	844, 1173, 1230
BstC8I	GCNNGC	4 cut(s)	52, 207, 516, 700
BstDEI	CTNAG	2 cut(s)	120, 852
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	3 cut(s)	792, 880, 1159
BstKTI	GATC	3 cut(s)	200, 523, 997
BstMAI	GTCTC	3 cut(s)	502, 794, 1000
BstMBI	GATC	3 cut(s)	197, 520, 994
BstMWI	GCNNNNNNNGC	3 cut(s)	587, 821, 956
BstNI	CCWGG	1 cut(s)	1087
BstSCI	CCNGG	3 cut(s)	348, 550, 1085
BstV1I	GCAGC	2 cut(s)	711, 824
BstV2I	GAAGAC	2 cut(s)	183, 1236
BsuI	GTATCC	2 cut(s)	388, 716
BtgI	CCRYGG	1 cut(s)	69
BtsCI	GGATG	3 cut(s)	792, 880, 1159
BtsIMutI	CAGTG	2 cut(s)	219, 624
BveI	ACCTGC	1 cut(s)	1236
Cac8I	GCNNGC	4 cut(s)	52, 207, 516, 700
Cfr10I	RCCGGY	2 cut(s)	235, 1112
Cfr13I	GGNCC	2 cut(s)	437, 1036
Csp6I	GTAC	3 cut(s)	406, 694, 963
CspAI	ACCGGT	2 cut(s)	235, 1112
CviAII	CATG	6 cut(s)	70, 259, 311, 976, 1054, 1147
CviQI	GTAC	3 cut(s)	406, 694, 963
DdeI	CTNAG	2 cut(s)	120, 852
DpnI	GATC	3 cut(s)	199, 522, 996
DpnII	GATC	3 cut(s)	197, 520, 994
Eam1104I	CTCTTC	3 cut(s)	844, 1173, 1230
EarI	CTCTTC	3 cut(s)	844, 1173, 1230
Eco130I	CCWWGG	1 cut(s)	69
Eco47I	GGWCC	2 cut(s)	437, 1036
Eco57I	CTGAAG	2 cut(s)	1182, 1221
EcoRI	GAATTC	1 cut(s)	878
EcoRII	CCWGG	1 cut(s)	1085
EcoT14I	CCWWGG	1 cut(s)	69
EcoT22I	ATGCAT	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	69
Esp3I	CGTCTC	1 cut(s)	1000
FaeI	CATG	6 cut(s)	73, 262, 314, 979, 1057, 1150
FalI	AAGNNNNNCTT	4 cut(s)	266, 298, 926, 958
FatI	CATG	6 cut(s)	69, 258, 310, 975, 1053, 1146
FauI	CCCGC	1 cut(s)	66
FauNDI	CATATG	1 cut(s)	637
Fnu4HI	GCNGC	2 cut(s)	725, 813
FokI	GGATG	3 cut(s)	799, 887, 1166
Fsp4HI	GCNGC	2 cut(s)	725, 813
FspBI	CTAG	1 cut(s)	663
GluI	GCNGC	2 cut(s)	725, 813
HapII	CCGG	4 cut(s)	236, 350, 552, 1113
Hin1II	CATG	6 cut(s)	73, 262, 314, 979, 1057, 1150
HinfI	GANTC	7 cut(s)	11, 17, 74, 185, 314, 340, 361
HpaII	CCGG	4 cut(s)	236, 350, 552, 1113
HphI	GGTGA	2 cut(s)	427, 829
Hpy166II	GTNNAC	1 cut(s)	544
Hpy188I	TCNGA	6 cut(s)	16, 79, 123, 558, 855, 1201
Hpy188III	TCNNGA	5 cut(s)	195, 226, 344, 998, 1105
Hpy8I	GTNNAC	1 cut(s)	544
HpyAV	CCTTC	3 cut(s)	928, 1063, 1114
HpyCH4III	ACNGT	4 cut(s)	400, 426, 628, 1099
HpyCH4IV	ACGT	1 cut(s)	756
HpyCH4V	TGCA	3 cut(s)	289, 702, 824
HpyF10VI	GCNNNNNNNGC	3 cut(s)	587, 821, 956
HpyF3I	CTNAG	2 cut(s)	120, 852
HpySE526I	ACGT	1 cut(s)	756
Hsp92II	CATG	6 cut(s)	73, 262, 314, 979, 1057, 1150
Kzo9I	GATC	3 cut(s)	197, 520, 994
LmnI	GCTCC	1 cut(s)	148
Lsp1109I	GCAGC	2 cut(s)	711, 824
LweI	GCATC	2 cut(s)	218, 298
MaeI	CTAG	1 cut(s)	663
MaeII	ACGT	1 cut(s)	756
MaeIII	GTNAC	2 cut(s)	670, 916
MalI	GATC	3 cut(s)	199, 522, 996
MbiI	CCGCTC	1 cut(s)	518
MboI	GATC	3 cut(s)	197, 520, 994
MhlI	GDGCHC	1 cut(s)	1112
MluCI	AATT	3 cut(s)	157, 844, 878
MlyI	GAGTC	2 cut(s)	68, 355
MmeI	TCCRAC	3 cut(s)	243, 852, 883
Mph1103I	ATGCAT	1 cut(s)	291
MroXI	GAANNNNTTC	2 cut(s)	425, 938
MseI	TTAA	2 cut(s)	945, 1064
MslI	CAYNNNNRTG	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	815
MspI	CCGG	4 cut(s)	236, 350, 552, 1113
MspR9I	CCNGG	3 cut(s)	350, 552, 1087
Mva1269I	GAATGC	1 cut(s)	740
MvaI	CCWGG	1 cut(s)	1087
MwoI	GCNNNNNNNGC	3 cut(s)	587, 821, 956
NciI	CCSGG	2 cut(s)	350, 552
NcoI	CCATGG	1 cut(s)	69
NdeI	CATATG	1 cut(s)	637
NdeII	GATC	3 cut(s)	197, 520, 994
NlaIII	CATG	6 cut(s)	73, 262, 314, 979, 1057, 1150
NlaIV	GGNNCC	1 cut(s)	376
NsiI	ATGCAT	1 cut(s)	291
PctI	GAATGC	1 cut(s)	740
PdmI	GAANNNNTTC	2 cut(s)	425, 938
PfeI	GAWTC	5 cut(s)	11, 17, 185, 314, 340
PflMI	CCANNNNNTGG	1 cut(s)	446
PinAI	ACCGGT	2 cut(s)	235, 1112
PkrI	GCNGC	2 cut(s)	726, 814
PleI	GAGTC	2 cut(s)	68, 355
PpsI	GAGTC	2 cut(s)	68, 355
PsiI	TTATAA	1 cut(s)	987
Psp6I	CCWGG	1 cut(s)	1085
PspGI	CCWGG	1 cut(s)	1085
PspN4I	GGNNCC	1 cut(s)	376
PspPI	GGNCC	2 cut(s)	437, 1036
RsaI	GTAC	3 cut(s)	407, 695, 964
RsaNI	GTAC	3 cut(s)	406, 694, 963
RseI	CAYNNNNRTG	1 cut(s)	309
SaqAI	TTAA	2 cut(s)	945, 1064
SatI	GCNGC	2 cut(s)	725, 813
Sau3AI	GATC	3 cut(s)	197, 520, 994
Sau96I	GGNCC	2 cut(s)	437, 1036
ScaI	AGTACT	1 cut(s)	964
SchI	GAGTC	2 cut(s)	68, 355
ScrFI	CCNGG	3 cut(s)	350, 552, 1087
SduI	GDGCHC	1 cut(s)	1112
SfaNI	GCATC	2 cut(s)	218, 298
SinI	GGWCC	2 cut(s)	437, 1036
SmiMI	CAYNNNNRTG	1 cut(s)	309
SmlI	CTYRAG	1 cut(s)	1105
SmoI	CTYRAG	1 cut(s)	1105
Sse9I	AATT	3 cut(s)	157, 844, 878
SsiI	CCGC	5 cut(s)	59, 518, 815, 895, 914
SspMI	CTAG	1 cut(s)	663
StyD4I	CCNGG	3 cut(s)	348, 550, 1085
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	4 cut(s)	400, 426, 628, 1099
TaiI	ACGT	1 cut(s)	759
TaqI	TCGA	2 cut(s)	317, 345
TasI	AATT	3 cut(s)	157, 844, 878
TatI	WGTACW	1 cut(s)	962
TfiI	GAWTC	5 cut(s)	11, 17, 185, 314, 340
Tru1I	TTAA	2 cut(s)	945, 1064
Tru9I	TTAA	2 cut(s)	945, 1064
TscAI	CASTG	2 cut(s)	219, 631
TseI	GCWGC	2 cut(s)	724, 812
TspRI	CASTG	2 cut(s)	219, 631
Van91I	CCANNNNNTGG	1 cut(s)	446
VpaK11BI	GGWCC	2 cut(s)	437, 1036
XapI	RAATTY	2 cut(s)	844, 878
XmnI	GAANNNNTTC	2 cut(s)	425, 938
XspI	CTAG	1 cut(s)	663
ZrmI	AGTACT	1 cut(s)	964
Zsp2I	ATGCAT	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.