Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0008722

Physical Location & Seq

Genomic Coordinates Forward (+)

29837063 .. 29840972

Gene Structure 3910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG165400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGAAAATCAGGGTAAAGAGGCTGAGGACCTCCATGGTTCAATGGAGAAACTTAATATTGAGGAATCATCCACCAGCTTCAAGAAAAAACCTGTTATTATTATTGTTGTAGGCATGGCAGGGAGTGGTAAAACTACCTTTCTTCATCGCTTGGTTGCCCACACTCATCAATCCGGTATTCGTGGCTATGTGATGAACCTTGACCCGGCTGTGTTGACTCTTCCATTCGGTGCAAACATAGACATCCGGGATACTGTTAAGTACAAGGAAGTGATGAAACAATTCAACCTTGGACCTAATGGTGGCATTTTGACCTCGCTCAATTTGTTTGCGACCAAGTTTGATGAGGTTATCAACGTTATCGAGAAGCGAGCAGATCAACTTGATTATGTTCTTGTGGACACTCCTGGTCAGATTGAGATATTCACTTGGTCAGCATCTGGTGCTATCATCACAGAAGCATTTGCTTCAACATTTCCTACTGTTGTGGCTTATGTAGTCGATACACCTCGCTCAGCTAGCCCAGTTACTTTTATGAGCAACATGCTTTATGCTTGTAGTATCCTCTACAAGACAAGGCTGCCCCTTGTGCTGGCATTCAACAAAATTGATGTGGCTCAACATGAGTTTGCTTTGGAGTGGATGCAGGATTTTGAGGCATTTCAAGCAGCACTGAGTGAAGACCACTCATACACTTCAACTTTAACAGAGAGCCTCTCCCTTGTGTTGGATGAATTCTATAAGAACTTGCGGTCTGTTGGAGTGTCTGCTATTTCTGGTGCTGGAATGGACGCCTTCTTTAAGGCTATTGAAGCAAGTGCTGAGGAGTACATGGCCACCTATAAGGCTGATCTGGACAAGAGACGTGCAGAAAAGGAGCGTTTAGAGGAGGAACATAGGAGGGAGAACATGGAGAAGTTGAGGAAGGATATGGAGCAATCCAGGGGAGAAAATGTGGTCTTGAGCACTGGTTTGAAGGACAATGGAGAGAGGAGCAAAGCCATGATGGATGAGGATGAGGATGAGGAACTGGACGAGGATGAGGAGATAATAACTGAAGATGAGGATGTCATAGATGAGGATGAAGATGATGAAGATAGCAAGTTCCCCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005874 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP_bind_1

Protein Analysis

371

Amino Acids

41.76

Weight (kDa)

4.51

Isoelectric Point (pI)

49.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	32 - 272	7.7e-07	Elongation factor Tu GTP binding domain
ATP_bind_1	PF03029	36 - 274	2.1e-82	Conserved hypothetical ATP binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21800 AT4G21800
fragaria_vesca	FvH4_4g12660 FvH4_4g12660
malus_domestica	MD12G1007400.v1.1 MD13G1150100.v1.1 MD14G1004700.v1.1 MD16G1150500.v1.1
prunus_persica	Prupe.1G114400_v2.0.a1
pyrus_communis	pycom12g00540 pycom14g00320 pycom16g12890
rosa_chinensis	RchiOBHm_Chr4g0411531
rosa_laevigata	RLG00000008348
rosa_multiflora	Rmu_sc0001868.1_g000001
rosa_roxburghii	Rroxscaffold_5G00356100
rosa_rugosa	Rorug04G0108000
rosa_samantha	Rh4AG168800 Rh4BG165400 Rh4CG180200 Rh4DG163100
rosa_wichuraiana	Rw0G020790 Rw4G014020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	751
AclI	AACGTT	1 cut(s)	357
AcoI	YGGCCR	1 cut(s)	834
AcsI	RAATTY	1 cut(s)	734
AcuI	CTGAAG	1 cut(s)	1077
AcyI	GRCGYC	1 cut(s)	792
AdeI	CACNNNGTG	1 cut(s)	677
AfaI	GTAC	2 cut(s)	263, 830
AfiI	CCNNNNNNNGG	4 cut(s)	205, 302, 592, 727
AgsI	TTSAA	9 cut(s)	42, 82, 286, 471, 601, 665, 699, 812, 976
AjiI	CACGTC	1 cut(s)	866
AjnI	CCWGG	2 cut(s)	406, 941
AluBI	AGCT	2 cut(s)	78, 518
AluI	AGCT	2 cut(s)	78, 518
Alw21I	GWGCWC	1 cut(s)	968
Alw26I	GTCTC	1 cut(s)	856
AlwNI	CAGNNNCTG	1 cut(s)	440
AoxI	GGCC	1 cut(s)	834
ApeKI	GCWGC	2 cut(s)	580, 668
ApoI	RAATTY	1 cut(s)	734
Asp700I	GAANNNNTTC	1 cut(s)	281
AspS9I	GGNCC	2 cut(s)	28, 293
AsuC2I	CCSGG	2 cut(s)	206, 248
AsuNHI	GCTAGC	1 cut(s)	518
AvaII	GGWCC	2 cut(s)	28, 293
BalI	TGGCCA	1 cut(s)	836
BbsI	GAAGAC	1 cut(s)	687
Bbv12I	GWGCWC	1 cut(s)	968
BbvCI	CCTCAGC	2 cut(s)	24, 822
BbvI	GCAGC	2 cut(s)	567, 680
BccI	CCATC	1 cut(s)	1000
BciT130I	CCWGG	2 cut(s)	408, 943
BciVI	GTATCC	2 cut(s)	244, 572
BcnI	CCSGG	2 cut(s)	206, 248
BcoDI	GTCTC	1 cut(s)	856
BfaI	CTAG	1 cut(s)	519
BfuI	GTATCC	2 cut(s)	244, 572
BisI	GCNGC	2 cut(s)	581, 669
BlpI	GCTNAGC	1 cut(s)	514
BlsI	GCNGC	2 cut(s)	582, 670
Bme1390I	CCNGG	4 cut(s)	206, 248, 408, 943
Bme18I	GGWCC	2 cut(s)	28, 293
BmgBI	CACGTC	1 cut(s)	866
BmgT120I	GGNCC	2 cut(s)	28, 293
BmrFI	CCNGG	4 cut(s)	206, 248, 408, 943
BmrI	ACTGGG	1 cut(s)	518
BmsI	GCATC	2 cut(s)	446, 633
BmtI	GCTAGC	1 cut(s)	522
BmuI	ACTGGG	1 cut(s)	518
BpiI	GAAGAC	1 cut(s)	687
BplI	GAGNNNNNCTC	2 cut(s)	701, 733
Bpu10I	CCTNAGC	2 cut(s)	24, 822
Bpu1102I	GCTNAGC	1 cut(s)	514
BpuEI	CTTGAG	1 cut(s)	982
BpuMI	CCSGG	2 cut(s)	206, 248
BsaHI	GRCGYC	1 cut(s)	792
BsaJI	CCNNGG	3 cut(s)	34, 289, 942
BsaWI	WCCGGW	1 cut(s)	173
BsaXI	ACNNNNNCTCC	2 cut(s)	939, 969
Bsc4I	CCNNNNNNNGG	4 cut(s)	205, 302, 592, 727
Bse1I	ACTGG	3 cut(s)	524, 973, 1035
BseBI	CCWGG	2 cut(s)	408, 943
BseDI	CCNNGG	3 cut(s)	34, 289, 942
BseLI	CCNNNNNNNGG	4 cut(s)	205, 302, 592, 727
BseMII	CTCAG	4 cut(s)	15, 528, 665, 813
BseNI	ACTGG	3 cut(s)	524, 973, 1035
BseRI	GAGGAG	4 cut(s)	839, 902, 1006, 1058
BseXI	GCAGC	2 cut(s)	567, 680
BsgI	GTGCAG	1 cut(s)	888
BshFI	GGCC	1 cut(s)	836
BsiHKAI	GWGCWC	1 cut(s)	968
BsiSI	CCGG	3 cut(s)	174, 206, 247
BslI	CCNNNNNNNGG	4 cut(s)	205, 302, 592, 727
BsmAI	GTCTC	1 cut(s)	856
BsmBI	CGTCTC	1 cut(s)	856
BsmI	GAATGC	1 cut(s)	596
BsnI	GGCC	1 cut(s)	836
Bsp1286I	GDGCHC	1 cut(s)	968
Bsp143I	GATC	2 cut(s)	376, 850
Bsp1720I	GCTNAGC	1 cut(s)	514
Bsp19I	CCATGG	1 cut(s)	34
BspACI	CCGC	1 cut(s)	751
BspANI	GGCC	1 cut(s)	836
BspCNI	CTCAG	4 cut(s)	16, 527, 666, 814
BspOI	GCTAGC	1 cut(s)	522
BsrI	ACTGG	3 cut(s)	524, 973, 1035
BssECI	CCNNGG	3 cut(s)	34, 289, 942
BssMI	GATC	2 cut(s)	376, 850
BssNI	GRCGYC	1 cut(s)	792
BssT1I	CCWWGG	2 cut(s)	34, 289
Bst2UI	CCWGG	2 cut(s)	408, 943
Bst4CI	ACNGT	2 cut(s)	256, 484
Bst6I	CTCTTC	1 cut(s)	225
BstACI	GRCGYC	1 cut(s)	792
BstAPI	GCANNNNNTGC	1 cut(s)	443
BstC8I	GCNNGC	3 cut(s)	372, 520, 594
BstDEI	CTNAG	4 cut(s)	24, 514, 674, 822
BstDSI	CCRYGG	1 cut(s)	34
BstKTI	GATC	2 cut(s)	379, 853
BstMAI	GTCTC	1 cut(s)	856
BstMBI	GATC	2 cut(s)	376, 850
BstMWI	GCNNNNNNNGC	5 cut(s)	443, 519, 589, 665, 812
BstNI	CCWGG	2 cut(s)	408, 943
BstNSI	RCATGY	1 cut(s)	547
BstSCI	CCNGG	4 cut(s)	204, 246, 406, 941
BstV1I	GCAGC	2 cut(s)	567, 680
BstV2I	GAAGAC	1 cut(s)	687
BsuI	GTATCC	2 cut(s)	244, 572
BsuRI	GGCC	1 cut(s)	836
BtgI	CCRYGG	1 cut(s)	34
BtgZI	GCGATG	1 cut(s)	131
BtrI	CACGTC	1 cut(s)	866
BtsIMutI	CAGTG	2 cut(s)	671, 966
Cac8I	GCNNGC	3 cut(s)	372, 520, 594
CaiI	CAGNNNCTG	1 cut(s)	440
Cfr13I	GGNCC	2 cut(s)	28, 293
CseI	GACGC	1 cut(s)	800
Csp6I	GTAC	2 cut(s)	262, 829
CviAII	CATG	7 cut(s)	35, 115, 544, 623, 832, 910, 1003
CviQI	GTAC	2 cut(s)	262, 829
DdeI	CTNAG	4 cut(s)	24, 514, 674, 822
DpnI	GATC	2 cut(s)	378, 852
DpnII	GATC	2 cut(s)	376, 850
DraIII	CACNNNGTG	1 cut(s)	677
EaeI	YGGCCR	1 cut(s)	834
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco130I	CCWWGG	2 cut(s)	34, 289
Eco47I	GGWCC	2 cut(s)	28, 293
Eco57I	CTGAAG	1 cut(s)	1077
EcoO109I	RGGNCCY	1 cut(s)	28
EcoRI	GAATTC	1 cut(s)	734
EcoRII	CCWGG	2 cut(s)	406, 941
EcoT14I	CCWWGG	2 cut(s)	34, 289
ErhI	CCWWGG	2 cut(s)	34, 289
Esp3I	CGTCTC	1 cut(s)	856
FaeI	CATG	7 cut(s)	38, 118, 547, 626, 835, 913, 1006
FalI	AAGNNNNNCTT	1 cut(s)	1094
FatI	CATG	7 cut(s)	34, 114, 543, 622, 831, 909, 1002
Fnu4HI	GCNGC	2 cut(s)	581, 669
Fsp4HI	GCNGC	2 cut(s)	581, 669
FspBI	CTAG	1 cut(s)	519
GluI	GCNGC	2 cut(s)	581, 669
HaeIII	GGCC	1 cut(s)	836
HapII	CCGG	3 cut(s)	174, 206, 247
HgaI	GACGC	1 cut(s)	800
Hin1I	GRCGYC	1 cut(s)	792
Hin1II	CATG	7 cut(s)	38, 118, 547, 626, 835, 913, 1006
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HinfI	GANTC	2 cut(s)	65, 217
HpaII	CCGG	3 cut(s)	174, 206, 247
Hpy166II	GTNNAC	2 cut(s)	216, 400
Hpy188I	TCNGA	1 cut(s)	414
Hpy188III	TCNNGA	4 cut(s)	82, 364, 854, 961
Hpy8I	GTNNAC	2 cut(s)	216, 400
HpyAV	CCTTC	3 cut(s)	805, 919, 970
HpyCH4III	ACNGT	2 cut(s)	256, 484
HpyCH4IV	ACGT	2 cut(s)	357, 865
HpyCH4V	TGCA	3 cut(s)	233, 646, 869
HpyF10VI	GCNNNNNNNGC	5 cut(s)	443, 519, 589, 665, 812
HpyF3I	CTNAG	4 cut(s)	24, 514, 674, 822
HpySE526I	ACGT	2 cut(s)	357, 865
Hsp92I	GRCGYC	1 cut(s)	792
Hsp92II	CATG	7 cut(s)	38, 118, 547, 626, 835, 913, 1006
Kzo9I	GATC	2 cut(s)	376, 850
LmnI	GCTCC	3 cut(s)	877, 934, 993
Lsp1109I	GCAGC	2 cut(s)	567, 680
LweI	GCATC	2 cut(s)	446, 633
MaeI	CTAG	1 cut(s)	519
MaeII	ACGT	2 cut(s)	357, 865
MaeIII	GTNAC	1 cut(s)	526
MalI	GATC	2 cut(s)	378, 852
MboI	GATC	2 cut(s)	376, 850
MboII	GAAGA	6 cut(s)	134, 212, 692, 1070, 1097, 1106
MhlI	GDGCHC	1 cut(s)	968
MlsI	TGGCCA	1 cut(s)	836
MluCI	AATT	4 cut(s)	281, 322, 606, 734
MluNI	TGGCCA	1 cut(s)	836
MlyI	GAGTC	1 cut(s)	211
MmeI	TCCRAC	2 cut(s)	708, 739
Mox20I	TGGCCA	1 cut(s)	836
MroXI	GAANNNNTTC	1 cut(s)	281
MscI	TGGCCA	1 cut(s)	836
MseI	TTAA	4 cut(s)	54, 258, 704, 801
Msp20I	TGGCCA	1 cut(s)	836
MspI	CCGG	3 cut(s)	174, 206, 247
MspR9I	CCNGG	4 cut(s)	206, 248, 408, 943
Mva1269I	GAATGC	1 cut(s)	596
MvaI	CCWGG	2 cut(s)	408, 943
MwoI	GCNNNNNNNGC	5 cut(s)	443, 519, 589, 665, 812
NciI	CCSGG	2 cut(s)	206, 248
NcoI	CCATGG	1 cut(s)	34
NdeII	GATC	2 cut(s)	376, 850
NheI	GCTAGC	1 cut(s)	518
NlaIII	CATG	7 cut(s)	38, 118, 547, 626, 835, 913, 1006
NspI	RCATGY	1 cut(s)	547
PctI	GAATGC	1 cut(s)	596
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	65
PfoI	TCCNGGA	1 cut(s)	246
PkrI	GCNGC	2 cut(s)	582, 670
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
PpuMI	RGGWCCY	1 cut(s)	28
Psp1406I	AACGTT	1 cut(s)	357
Psp5II	RGGWCCY	1 cut(s)	28
Psp6I	CCWGG	2 cut(s)	406, 941
PspGI	CCWGG	2 cut(s)	406, 941
PspPI	GGNCC	2 cut(s)	28, 293
PspPPI	RGGWCCY	1 cut(s)	28
PstNI	CAGNNNCTG	1 cut(s)	440
RsaI	GTAC	2 cut(s)	263, 830
RsaNI	GTAC	2 cut(s)	262, 829
SaqAI	TTAA	4 cut(s)	54, 258, 704, 801
SatI	GCNGC	2 cut(s)	581, 669
Sau3AI	GATC	2 cut(s)	376, 850
Sau96I	GGNCC	2 cut(s)	28, 293
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	4 cut(s)	206, 248, 408, 943
SduI	GDGCHC	1 cut(s)	968
SfaNI	GCATC	2 cut(s)	446, 633
SinI	GGWCC	2 cut(s)	28, 293
SmlI	CTYRAG	1 cut(s)	961
SmoI	CTYRAG	1 cut(s)	961
Sse9I	AATT	4 cut(s)	281, 322, 606, 734
SsiI	CCGC	1 cut(s)	751
SspI	AATATT	1 cut(s)	58
SspMI	CTAG	1 cut(s)	519
StyD4I	CCNGG	4 cut(s)	204, 246, 406, 941
StyI	CCWWGG	2 cut(s)	34, 289
TaaI	ACNGT	2 cut(s)	256, 484
TaiI	ACGT	2 cut(s)	360, 868
TaqI	TCGA	2 cut(s)	363, 501
TasI	AATT	4 cut(s)	281, 322, 606, 734
TatI	WGTACW	2 cut(s)	261, 828
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	4 cut(s)	54, 258, 704, 801
Tru9I	TTAA	4 cut(s)	54, 258, 704, 801
TscAI	CASTG	2 cut(s)	678, 973
TseI	GCWGC	2 cut(s)	580, 668
TspDTI	ATGAA	6 cut(s)	134, 209, 290, 747, 1098, 1107
TspRI	CASTG	2 cut(s)	678, 973
VpaK11BI	GGWCC	2 cut(s)	28, 293
XapI	RAATTY	1 cut(s)	734
XceI	RCATGY	1 cut(s)	547
XmnI	GAANNNNTTC	1 cut(s)	281
XspI	CTAG	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.