Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0008722

Physical Location & Seq

Genomic Coordinates Forward (+)

188973 .. 191473

Gene Structure 2501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g00320.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGACTCGGAAAACTCATCCGCCGTTAAAAAGAATGAGGGGAAAGAAGATGAGGAGCTTACTAACTCAATGAAGAAACTACAATTTGAGGAATCATCATCCGGTTCAGGGCAGGCATCAGTGTCTAACTTCAAGAGAAAACCGGTTATTGTAATCGTTATCGGCATGGCAGGGAGCGGTAAGACAACCTTTATGCATCGGTTGGTTTCGCACACACATGAATCCAACATTCGTGGATACGTGATGAATCTCGACCCAGCTGTGATGACTCTCCCGTTTGGTGCGAACATTGACATTCGGGATACTGTTCGGTACAAGGAGGTGATGAAACAGTTCAATCTTGGACCAAATGGTGGGATTTTGACTTCACTCAACTTGTTTGCTACCAAGTTTGATGAGGTTGTCTCAGTCATTGAGAAGCGAGCGGATCAGCTTGATTATGTTCTTGTGGATACTCCTGGTCAGATTGAGATATTCACTTGGTCCGCTTCTGGTGCTATCATCACAGAAGCATTTGCTTCAACGTTTCCCACTGTAATCGCTTATGTGGTAGATACGCCTCGTTCAGCTAGCCCAGTCACTTTTATGAGCAATATGCTGTATGCTTGTAGTATTCTTTACAAGACAAGGCTGCCCCTTGTGTTGGCATTCAACAAAATTGACATTGCTCAACATCAATTTGCTTTGGAGTGGATGGAGGATTTTGAGTCATTTCAAGCAGCAGTGAGTGCAGATAGTTCATACTCTTCAAATTTGGCTCAGAGCCTCTCCCTTGTGTTGGATGAATTCTATAAGAACTTGCGGTCTGTTGGAGTGTCTGCGGTTACTGGTGCTGGAATGAAGGATTTCTTTAACGCCATTGAAGCAAGTGCTGACGAGTACATGGAAACCTATAAGGCTGATCGGGACAAGAGACGGGCAGAGAAGCAACGATTAGAGGAGGAACACAGAAAGGAGAACATGGAGAAGTTGAGGAAGGATGTGGAGAAATCCAGGGGAGAAACTGTGGTCTTGAGCACTGGTTTGAAGGACAAAGATGAGAGGGGTAATGCCATGATGGATGAGGATGAAGAAGATGAAGTCGAAGAGGAAGATGAGGTTTTTTCTGAAGATGAGGAAGGTATAGATGAAGATGAAGACGAAGAGGTTGGCAGGTTCTCGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005874 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP_bind_1

Protein Analysis

389

Amino Acids

43.55

Weight (kDa)

4.59

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21800 AT4G21800
fragaria_vesca	FvH4_4g12660 FvH4_4g12660
malus_domestica	MD12G1007400.v1.1 MD13G1150100.v1.1 MD14G1004700.v1.1 MD16G1150500.v1.1
prunus_persica	Prupe.1G114400_v2.0.a1
pyrus_communis	pycom12g00540 pycom14g00320 pycom16g12890
rosa_chinensis	RchiOBHm_Chr4g0411531
rosa_laevigata	RLG00000008348
rosa_multiflora	Rmu_sc0001868.1_g000001
rosa_roxburghii	Rroxscaffold_5G00356100
rosa_rugosa	Rorug04G0108000
rosa_samantha	Rh4AG168800 Rh4BG165400 Rh4CG180200 Rh4DG163100
rosa_wichuraiana	Rw0G020790 Rw4G014020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1143
AccB7I	CCANNNNNTGG	1 cut(s)	353
AccBSI	CCGCTC	2 cut(s)	177, 425
AciI	CCGC	6 cut(s)	21, 177, 425, 486, 802, 821
AclI	AACGTT	1 cut(s)	524
AclWI	GGATC	1 cut(s)	435
AcsI	RAATTY	2 cut(s)	751, 785
AcuI	CTGAAG	1 cut(s)	1128
AfaI	GTAC	2 cut(s)	314, 881
AfiI	CCNNNNNNNGG	4 cut(s)	108, 353, 643, 778
AgeI	ACCGGT	1 cut(s)	142
AgsI	TTSAA	8 cut(s)	133, 337, 522, 652, 716, 750, 863, 1027
AjnI	CCWGG	2 cut(s)	457, 992
AluBI	AGCT	4 cut(s)	58, 260, 433, 569
AluI	AGCT	4 cut(s)	58, 260, 433, 569
Alw21I	GWGCWC	1 cut(s)	1019
Alw26I	GTCTC	2 cut(s)	409, 907
AlwI	GGATC	1 cut(s)	435
ApeKI	GCWGC	2 cut(s)	631, 719
ApoI	RAATTY	2 cut(s)	751, 785
AsiGI	ACCGGT	1 cut(s)	142
Asp700I	GAANNNNTTC	2 cut(s)	332, 845
AspS9I	GGNCC	2 cut(s)	344, 483
AsuHPI	GGTGA	1 cut(s)	334
AsuNHI	GCTAGC	1 cut(s)	569
AvaII	GGWCC	2 cut(s)	344, 483
BbsI	GAAGAC	1 cut(s)	1143
Bbv12I	GWGCWC	1 cut(s)	1019
BbvI	GCAGC	2 cut(s)	618, 731
BccI	CCATC	2 cut(s)	688, 1051
BceAI	ACGGC	1 cut(s)	8
BciT130I	CCWGG	2 cut(s)	459, 994
BciVI	GTATCC	3 cut(s)	230, 295, 445
BcoDI	GTCTC	2 cut(s)	409, 907
BfaI	CTAG	1 cut(s)	570
BfuAI	ACCTGC	1 cut(s)	1143
BfuI	GTATCC	3 cut(s)	230, 295, 445
BisI	GCNGC	2 cut(s)	632, 720
BlsI	GCNGC	2 cut(s)	633, 721
Bme1390I	CCNGG	2 cut(s)	459, 994
Bme18I	GGWCC	2 cut(s)	344, 483
BmgT120I	GGNCC	2 cut(s)	344, 483
BmrFI	CCNGG	2 cut(s)	459, 994
BmrI	ACTGGG	1 cut(s)	569
BmsI	GCATC	2 cut(s)	125, 205
BmtI	GCTAGC	1 cut(s)	573
BmuI	ACTGGG	1 cut(s)	569
BpiI	GAAGAC	1 cut(s)	1143
BplI	GAGNNNNNCTC	2 cut(s)	389, 421
BpuEI	CTTGAG	1 cut(s)	1033
BsaAI	YACGTR	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	993
BsaWI	WCCGGW	2 cut(s)	101, 142
BsaXI	ACNNNNNCTCC	2 cut(s)	990, 1020
Bsc4I	CCNNNNNNNGG	4 cut(s)	108, 353, 643, 778
Bse118I	RCCGGY	1 cut(s)	142
Bse1I	ACTGG	3 cut(s)	575, 832, 1024
Bse3DI	GCAATG	1 cut(s)	663
BseBI	CCWGG	2 cut(s)	459, 994
BseDI	CCNNGG	1 cut(s)	993
BseGI	GGATG	7 cut(s)	17, 98, 699, 787, 985, 1066, 1072
BseLI	CCNNNNNNNGG	4 cut(s)	108, 353, 643, 778
BseMI	GCAATG	1 cut(s)	663
BseMII	CTCAG	2 cut(s)	420, 773
BseNI	ACTGG	3 cut(s)	575, 832, 1024
BseRI	GAGGAG	2 cut(s)	68, 953
BseXI	GCAGC	2 cut(s)	618, 731
BseYI	CCCAGC	1 cut(s)	256
BsgI	GTGCAG	1 cut(s)	750
BshTI	ACCGGT	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	1019
BsiSI	CCGG	2 cut(s)	102, 143
BslFI	GGGAC	1 cut(s)	920
BslI	CCNNNNNNNGG	4 cut(s)	108, 353, 643, 778
BsmAI	GTCTC	2 cut(s)	409, 907
BsmBI	CGTCTC	1 cut(s)	907
BsmFI	GGGAC	1 cut(s)	920
BsmI	GAATGC	1 cut(s)	647
Bsp1286I	GDGCHC	1 cut(s)	1019
Bsp143I	GATC	2 cut(s)	427, 901
BspACI	CCGC	6 cut(s)	21, 177, 425, 486, 802, 821
BspCNI	CTCAG	2 cut(s)	419, 772
BspMI	ACCTGC	1 cut(s)	1143
BspOI	GCTAGC	1 cut(s)	573
BspPI	GGATC	1 cut(s)	435
BsrBI	CCGCTC	2 cut(s)	177, 425
BsrDI	GCAATG	1 cut(s)	663
BsrFI	RCCGGY	1 cut(s)	142
BsrI	ACTGG	3 cut(s)	575, 832, 1024
BssAI	RCCGGY	1 cut(s)	142
BssECI	CCNNGG	1 cut(s)	993
BssMI	GATC	2 cut(s)	427, 901
Bst2UI	CCWGG	2 cut(s)	459, 994
Bst4CI	ACNGT	4 cut(s)	307, 333, 535, 1006
Bst6I	CTCTTC	3 cut(s)	751, 1080, 1137
BstAPI	GCANNNNNTGC	1 cut(s)	728
BstBAI	YACGTR	1 cut(s)	241
BstC8I	GCNNGC	3 cut(s)	114, 423, 571
BstDEI	CTNAG	2 cut(s)	406, 759
BstF5I	GGATG	7 cut(s)	17, 98, 699, 787, 985, 1066, 1072
BstKTI	GATC	2 cut(s)	430, 904
BstMAI	GTCTC	2 cut(s)	409, 907
BstMBI	GATC	2 cut(s)	427, 901
BstMWI	GCNNNNNNNGC	3 cut(s)	494, 728, 863
BstNI	CCWGG	2 cut(s)	459, 994
BstSCI	CCNGG	2 cut(s)	457, 992
BstV1I	GCAGC	2 cut(s)	618, 731
BstV2I	GAAGAC	1 cut(s)	1143
BsuI	GTATCC	3 cut(s)	230, 295, 445
BtsCI	GGATG	7 cut(s)	17, 98, 699, 787, 985, 1066, 1072
BtsI	GCAGTG	1 cut(s)	729
BtsIMutI	CAGTG	4 cut(s)	126, 531, 729, 1017
BveI	ACCTGC	1 cut(s)	1143
Cac8I	GCNNGC	3 cut(s)	114, 423, 571
Cfr10I	RCCGGY	1 cut(s)	142
Cfr13I	GGNCC	2 cut(s)	344, 483
Csp6I	GTAC	2 cut(s)	313, 880
CspAI	ACCGGT	1 cut(s)	142
CspCI	CAANNNNNGTGG	2 cut(s)	214, 249
CviAII	CATG	5 cut(s)	166, 218, 883, 961, 1054
CviJI	RGCY	9 cut(s)	58, 260, 433, 569, 573, 631, 758, 765, 899
CviKI_1	RGCY	9 cut(s)	58, 260, 433, 569, 573, 631, 758, 765, 899
CviQI	GTAC	2 cut(s)	313, 880
DdeI	CTNAG	2 cut(s)	406, 759
DpnI	GATC	2 cut(s)	429, 903
DpnII	GATC	2 cut(s)	427, 901
Eam1104I	CTCTTC	3 cut(s)	751, 1080, 1137
EarI	CTCTTC	3 cut(s)	751, 1080, 1137
EciI	GGCGGA	1 cut(s)	10
Eco47I	GGWCC	2 cut(s)	344, 483
Eco57I	CTGAAG	1 cut(s)	1128
EcoRI	GAATTC	1 cut(s)	785
EcoRII	CCWGG	2 cut(s)	457, 992
EcoT22I	ATGCAT	1 cut(s)	198
Esp3I	CGTCTC	1 cut(s)	907
FaeI	CATG	5 cut(s)	169, 221, 886, 964, 1057
FalI	AAGNNNNNCTT	4 cut(s)	173, 205, 833, 865
FaqI	GGGAC	1 cut(s)	920
FatI	CATG	5 cut(s)	165, 217, 882, 960, 1053
Fnu4HI	GCNGC	2 cut(s)	632, 720
FokI	GGATG	7 cut(s)	4, 85, 706, 794, 992, 1073, 1079
Fsp4HI	GCNGC	2 cut(s)	632, 720
FspBI	CTAG	1 cut(s)	570
GluI	GCNGC	2 cut(s)	632, 720
GsaI	CCCAGC	1 cut(s)	260
HapII	CCGG	2 cut(s)	102, 143
Hin1II	CATG	5 cut(s)	169, 221, 886, 964, 1057
HinfI	GANTC	6 cut(s)	5, 92, 221, 247, 268, 707
HpaII	CCGG	2 cut(s)	102, 143
HphI	GGTGA	1 cut(s)	334
Hpy188I	TCNGA	4 cut(s)	10, 465, 762, 1108
Hpy188III	TCNNGA	5 cut(s)	133, 251, 299, 905, 1012
HpyAV	CCTTC	4 cut(s)	835, 970, 1021, 1112
HpyCH4III	ACNGT	4 cut(s)	307, 333, 535, 1006
HpyCH4IV	ACGT	2 cut(s)	240, 524
HpyCH4V	TGCA	2 cut(s)	196, 731
HpyF10VI	GCNNNNNNNGC	3 cut(s)	494, 728, 863
HpyF3I	CTNAG	2 cut(s)	406, 759
HpySE526I	ACGT	2 cut(s)	240, 524
Hsp92II	CATG	5 cut(s)	169, 221, 886, 964, 1057
Kzo9I	GATC	2 cut(s)	427, 901
LmnI	GCTCC	2 cut(s)	55, 174
Lsp1109I	GCAGC	2 cut(s)	618, 731
LweI	GCATC	2 cut(s)	125, 205
MaeI	CTAG	1 cut(s)	570
MaeII	ACGT	2 cut(s)	240, 524
MaeIII	GTNAC	2 cut(s)	577, 823
MalI	GATC	2 cut(s)	429, 903
MbiI	CCGCTC	2 cut(s)	177, 425
MboI	GATC	2 cut(s)	427, 901
MhlI	GDGCHC	1 cut(s)	1019
MluCI	AATT	5 cut(s)	83, 657, 677, 751, 785
MlyI	GAGTC	2 cut(s)	262, 716
MmeI	TCCRAC	3 cut(s)	249, 759, 790
Mph1103I	ATGCAT	1 cut(s)	198
MroXI	GAANNNNTTC	2 cut(s)	332, 845
MseI	TTAA	2 cut(s)	27, 852
MslI	CAYNNNNRTG	2 cut(s)	216, 584
MspA1I	CMGCKG	1 cut(s)	260
MspI	CCGG	2 cut(s)	102, 143
MspR9I	CCNGG	2 cut(s)	459, 994
Mva1269I	GAATGC	1 cut(s)	647
MvaI	CCWGG	2 cut(s)	459, 994
MwoI	GCNNNNNNNGC	3 cut(s)	494, 728, 863
NdeII	GATC	2 cut(s)	427, 901
NheI	GCTAGC	1 cut(s)	569
NlaIII	CATG	5 cut(s)	169, 221, 886, 964, 1057
NmuCI	GTSAC	1 cut(s)	577
NsiI	ATGCAT	1 cut(s)	198
PctI	GAATGC	1 cut(s)	647
PdmI	GAANNNNTTC	2 cut(s)	332, 845
PfeI	GAWTC	3 cut(s)	92, 221, 247
PflMI	CCANNNNNTGG	1 cut(s)	353
PinAI	ACCGGT	1 cut(s)	142
PkrI	GCNGC	2 cut(s)	633, 721
PleI	GAGTC	2 cut(s)	262, 715
PpsI	GAGTC	2 cut(s)	262, 715
Ppu21I	YACGTR	1 cut(s)	241
Psp1406I	AACGTT	1 cut(s)	524
Psp6I	CCWGG	2 cut(s)	457, 992
PspFI	CCCAGC	1 cut(s)	256
PspGI	CCWGG	2 cut(s)	457, 992
PspPI	GGNCC	2 cut(s)	344, 483
PvuII	CAGCTG	1 cut(s)	260
RsaI	GTAC	2 cut(s)	314, 881
RsaNI	GTAC	2 cut(s)	313, 880
RseI	CAYNNNNRTG	2 cut(s)	216, 584
SaqAI	TTAA	2 cut(s)	27, 852
SatI	GCNGC	2 cut(s)	632, 720
Sau3AI	GATC	2 cut(s)	427, 901
Sau96I	GGNCC	2 cut(s)	344, 483
SchI	GAGTC	2 cut(s)	262, 716
ScrFI	CCNGG	2 cut(s)	459, 994
SduI	GDGCHC	1 cut(s)	1019
SfaNI	GCATC	2 cut(s)	125, 205
SinI	GGWCC	2 cut(s)	344, 483
SmiMI	CAYNNNNRTG	2 cut(s)	216, 584
SmlI	CTYRAG	1 cut(s)	1012
SmoI	CTYRAG	1 cut(s)	1012
Sse9I	AATT	5 cut(s)	83, 657, 677, 751, 785
SsiI	CCGC	6 cut(s)	21, 177, 425, 486, 802, 821
SspMI	CTAG	1 cut(s)	570
StyD4I	CCNGG	2 cut(s)	457, 992
TaaI	ACNGT	4 cut(s)	307, 333, 535, 1006
TaiI	ACGT	2 cut(s)	243, 527
TaqI	TCGA	2 cut(s)	252, 1083
TasI	AATT	5 cut(s)	83, 657, 677, 751, 785
TatI	WGTACW	1 cut(s)	879
TfiI	GAWTC	3 cut(s)	92, 221, 247
Tru1I	TTAA	2 cut(s)	27, 852
Tru9I	TTAA	2 cut(s)	27, 852
TscAI	CASTG	4 cut(s)	126, 538, 729, 1024
TseFI	GTSAC	1 cut(s)	577
TseI	GCWGC	2 cut(s)	631, 719
Tsp45I	GTSAC	1 cut(s)	577
TspRI	CASTG	4 cut(s)	126, 538, 729, 1024
Van91I	CCANNNNNTGG	1 cut(s)	353
VpaK11BI	GGWCC	2 cut(s)	344, 483
XapI	RAATTY	2 cut(s)	751, 785
XmnI	GAANNNNTTC	2 cut(s)	332, 845
XspI	CTAG	1 cut(s)	570
Zsp2I	ATGCAT	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.