Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00952

Orthogroup ID

OG0008722

Physical Location & Seq

Genomic Coordinates Reverse (-)

17208 .. 19778

Gene Structure 2571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G020790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGACATTGATTCCGATTTCCAGAAAATGAACATCGCCTCACACCAACAACAGGTTGGGGGAGCTTCATCGGTGCCAATGGACGCTGAGGAAGACGACCCTTCCGTCGTCAAAGGTAAAGAGGCTGAGGACCTCCATGGTTCAATGGAGAAACTTAATATTGAGGAATCATCCACCAGCTTCAAGAAAAAACCTGTTATTATTATTGTTGTGGGCATGGCAGGGAGTGGTAAAACAACCTTTCTTCATCGTTTGGTTGCCCACACTCATCAATCCGGTATTCGTGGCTATGTGATGAACCTTGACCCGGCTGTGTTGACTCTTCCATTCGGTGCAAACATTGACATCCGGGATACTGTTAAGTACAAGGAAGTGATGAAACAATTCAACCTTGGACCTAATGGTGGCATTTTGACCTCACTCAATTTGTTTGCGACCAAGTTTGATGAGGTTATCAACGTTATCGAGAAGCGAGCAGATCAGCTTGATTATGTTCTTGTGGACACTCCTGGTCAGATTGAGATATTCACTTGGTCAGCATCTGGTGCTATCATCACAGAAGCATTTGCTTCAACATTTCCTACTGTTGTGGCTTATGTAGTCGATACACCTCGCTCAGCTAGCCCAGTTACTTTTATGAGCAACATGCTTTATGCTTGTAGTATCCTCTACAAGACAAGGCTCCCCCTTGTGCTGGCATTCAATAAAATTGACGTGGCTCAACATGAATTTGCTTTGGAGTGGATGCAGGATTTTGAGGCATTTCAAGCAGCAGTGAGTGAAGACCACTCATACACTTCAACCTTAACAGAGAACTTGCGGTCTGTTGGAGTGTCTGCTATTTCTGGTGCTGGAATGGACGCCTTCTTTAAGGCTATTGAAGCAAGTGCTGAGGAGTACATGGCCACCTATAAGGCTGATCTGGACAAGAGACGTGCAGAAAAGGAGCGTTGTTTAGAGGAGGAACATAGGAGGGAGAACATGGAGAAGTTGAGGAAGGATATGGAGCAATCCAGGGGAGAAAATGTGGTCTTGAGCACTGGTTTGAAGGACAATGGAGAGAGGAGCAAAGCCATGATGGATGAGGATGAGGATGAGGAACTGGACGAGGATGAGGAGATAATAACTGAAGATGAGGATGTCATAGATGAGGATGAAGATGATGAAGATAGCAAGTTCCCCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005874 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP_bind_1

Protein Analysis

395

Amino Acids

44.14

Weight (kDa)

4.47

Isoelectric Point (pI)

52.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	66 - 295	4.3e-07	Elongation factor Tu GTP binding domain
ATP_bind_1	PF03029	70 - 275	1.6e-74	Conserved hypothetical ATP binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21800 AT4G21800
fragaria_vesca	FvH4_4g12660 FvH4_4g12660
malus_domestica	MD12G1007400.v1.1 MD13G1150100.v1.1 MD14G1004700.v1.1 MD16G1150500.v1.1
prunus_persica	Prupe.1G114400_v2.0.a1
pyrus_communis	pycom12g00540 pycom14g00320 pycom16g12890
rosa_chinensis	RchiOBHm_Chr4g0411531
rosa_laevigata	RLG00000008348
rosa_multiflora	Rmu_sc0001868.1_g000001
rosa_roxburghii	Rroxscaffold_5G00356100
rosa_rugosa	Rorug04G0108000
rosa_samantha	Rh4AG168800 Rh4BG165400 Rh4CG180200 Rh4DG163100
rosa_wichuraiana	Rw0G020790 Rw4G014020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	104
AccB1I	GGYRCC	1 cut(s)	73
AciI	CCGC	1 cut(s)	820
AclI	AACGTT	1 cut(s)	459
AcoI	YGGCCR	1 cut(s)	903
AcsI	RAATTY	1 cut(s)	728
AcuI	CTGAAG	1 cut(s)	1149
AcyI	GRCGYC	1 cut(s)	861
AfaI	GTAC	2 cut(s)	365, 899
AfiI	CCNNNNNNNGG	4 cut(s)	52, 307, 404, 694
AgsI	TTSAA	9 cut(s)	144, 184, 388, 573, 703, 767, 801, 881, 1048
AjiI	CACGTC	2 cut(s)	715, 935
AjnI	CCWGG	2 cut(s)	508, 1013
AluBI	AGCT	4 cut(s)	65, 180, 484, 620
AluI	AGCT	4 cut(s)	65, 180, 484, 620
Alw21I	GWGCWC	1 cut(s)	1040
Alw26I	GTCTC	1 cut(s)	925
AlwNI	CAGNNNCTG	1 cut(s)	542
AoxI	GGCC	1 cut(s)	903
ApeKI	GCWGC	1 cut(s)	770
ApoI	RAATTY	1 cut(s)	728
Asp700I	GAANNNNTTC	1 cut(s)	383
AspS9I	GGNCC	2 cut(s)	130, 395
AsuC2I	CCSGG	2 cut(s)	308, 350
AsuNHI	GCTAGC	1 cut(s)	620
AvaII	GGWCC	2 cut(s)	130, 395
BalI	TGGCCA	1 cut(s)	905
BanI	GGYRCC	1 cut(s)	73
BbsI	GAAGAC	2 cut(s)	99, 789
Bbv12I	GWGCWC	1 cut(s)	1040
BbvCI	CCTCAGC	3 cut(s)	87, 126, 891
BbvI	GCAGC	1 cut(s)	782
BccI	CCATC	1 cut(s)	1072
BciT130I	CCWGG	2 cut(s)	510, 1015
BciVI	GTATCC	2 cut(s)	346, 674
BcnI	CCSGG	2 cut(s)	308, 350
BcoDI	GTCTC	1 cut(s)	925
BfaI	CTAG	1 cut(s)	621
BfuI	GTATCC	2 cut(s)	346, 674
BisI	GCNGC	1 cut(s)	771
BlpI	GCTNAGC	1 cut(s)	616
BlsI	GCNGC	1 cut(s)	772
Bme1390I	CCNGG	4 cut(s)	308, 350, 510, 1015
Bme18I	GGWCC	2 cut(s)	130, 395
BmgBI	CACGTC	2 cut(s)	715, 935
BmgT120I	GGNCC	2 cut(s)	130, 395
BmiI	GGNNCC	2 cut(s)	75, 683
BmrFI	CCNGG	4 cut(s)	308, 350, 510, 1015
BmrI	ACTGGG	1 cut(s)	620
BmsI	GCATC	2 cut(s)	548, 735
BmtI	GCTAGC	1 cut(s)	624
BmuI	ACTGGG	1 cut(s)	620
BpiI	GAAGAC	2 cut(s)	99, 789
Bpu10I	CCTNAGC	3 cut(s)	87, 126, 891
Bpu1102I	GCTNAGC	1 cut(s)	616
BpuEI	CTTGAG	1 cut(s)	1054
BpuMI	CCSGG	2 cut(s)	308, 350
BsaHI	GRCGYC	1 cut(s)	861
BsaJI	CCNNGG	3 cut(s)	136, 391, 1014
BsaWI	WCCGGW	1 cut(s)	275
BsaXI	ACNNNNNCTCC	2 cut(s)	1011, 1041
Bsc4I	CCNNNNNNNGG	4 cut(s)	52, 307, 404, 694
Bse1I	ACTGG	3 cut(s)	626, 1045, 1107
BseBI	CCWGG	2 cut(s)	510, 1015
BseDI	CCNNGG	3 cut(s)	136, 391, 1014
BseGI	GGATG	9 cut(s)	170, 345, 750, 1087, 1093, 1099, 1117, 1144, 1159
BseLI	CCNNNNNNNGG	4 cut(s)	52, 307, 404, 694
BseMII	CTCAG	4 cut(s)	78, 117, 630, 882
BseNI	ACTGG	3 cut(s)	626, 1045, 1107
BseRI	GAGGAG	4 cut(s)	908, 974, 1078, 1130
BseXI	GCAGC	1 cut(s)	782
BsgI	GTGCAG	1 cut(s)	957
BshFI	GGCC	1 cut(s)	905
BshNI	GGYRCC	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	1040
BsiSI	CCGG	3 cut(s)	276, 308, 349
BslI	CCNNNNNNNGG	4 cut(s)	52, 307, 404, 694
BsmAI	GTCTC	1 cut(s)	925
BsmBI	CGTCTC	1 cut(s)	925
BsmI	GAATGC	1 cut(s)	698
BsnI	GGCC	1 cut(s)	905
Bsp1286I	GDGCHC	1 cut(s)	1040
Bsp143I	GATC	2 cut(s)	478, 919
Bsp1720I	GCTNAGC	1 cut(s)	616
Bsp19I	CCATGG	1 cut(s)	136
BspACI	CCGC	1 cut(s)	820
BspANI	GGCC	1 cut(s)	905
BspCNI	CTCAG	4 cut(s)	79, 118, 629, 883
BspLI	GGNNCC	2 cut(s)	75, 683
BspOI	GCTAGC	1 cut(s)	624
BspT107I	GGYRCC	1 cut(s)	73
BsrI	ACTGG	3 cut(s)	626, 1045, 1107
BssECI	CCNNGG	3 cut(s)	136, 391, 1014
BssMI	GATC	2 cut(s)	478, 919
BssNI	GRCGYC	1 cut(s)	861
BssT1I	CCWWGG	2 cut(s)	136, 391
Bst2UI	CCWGG	2 cut(s)	510, 1015
Bst4CI	ACNGT	2 cut(s)	358, 586
Bst6I	CTCTTC	1 cut(s)	327
BstACI	GRCGYC	1 cut(s)	861
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstC8I	GCNNGC	3 cut(s)	474, 622, 696
BstDEI	CTNAG	4 cut(s)	87, 126, 616, 891
BstDSI	CCRYGG	1 cut(s)	136
BstF5I	GGATG	9 cut(s)	170, 345, 750, 1087, 1093, 1099, 1117, 1144, 1159
BstKTI	GATC	2 cut(s)	481, 922
BstMAI	GTCTC	1 cut(s)	925
BstMBI	GATC	2 cut(s)	478, 919
BstMWI	GCNNNNNNNGC	4 cut(s)	545, 621, 767, 881
BstNI	CCWGG	2 cut(s)	510, 1015
BstNSI	RCATGY	1 cut(s)	649
BstSCI	CCNGG	4 cut(s)	306, 348, 508, 1013
BstV1I	GCAGC	1 cut(s)	782
BstV2I	GAAGAC	2 cut(s)	99, 789
BsuI	GTATCC	2 cut(s)	346, 674
BsuRI	GGCC	1 cut(s)	905
BtgI	CCRYGG	1 cut(s)	136
BtgZI	GCGATG	1 cut(s)	19
BtrI	CACGTC	2 cut(s)	715, 935
BtsCI	GGATG	9 cut(s)	170, 345, 750, 1087, 1093, 1099, 1117, 1144, 1159
BtsI	GCAGTG	1 cut(s)	780
BtsIMutI	CAGTG	2 cut(s)	780, 1038
Cac8I	GCNNGC	3 cut(s)	474, 622, 696
CaiI	CAGNNNCTG	1 cut(s)	542
Cfr13I	GGNCC	2 cut(s)	130, 395
CseI	GACGC	2 cut(s)	92, 869
Csp6I	GTAC	2 cut(s)	364, 898
CviAII	CATG	7 cut(s)	137, 217, 646, 725, 901, 982, 1075
CviQI	GTAC	2 cut(s)	364, 898
DdeI	CTNAG	4 cut(s)	87, 126, 616, 891
DpnI	GATC	2 cut(s)	480, 921
DpnII	GATC	2 cut(s)	478, 919
DrdI	GACNNNNNNGTC	1 cut(s)	104
DseDI	GACNNNNNNGTC	1 cut(s)	104
EaeI	YGGCCR	1 cut(s)	903
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco130I	CCWWGG	2 cut(s)	136, 391
Eco47I	GGWCC	2 cut(s)	130, 395
Eco57I	CTGAAG	1 cut(s)	1149
EcoO109I	RGGNCCY	1 cut(s)	130
EcoRII	CCWGG	2 cut(s)	508, 1013
EcoT14I	CCWWGG	2 cut(s)	136, 391
ErhI	CCWWGG	2 cut(s)	136, 391
Esp3I	CGTCTC	1 cut(s)	925
FaeI	CATG	7 cut(s)	140, 220, 649, 728, 904, 985, 1078
FalI	AAGNNNNNCTT	1 cut(s)	1166
FatI	CATG	7 cut(s)	136, 216, 645, 724, 900, 981, 1074
Fnu4HI	GCNGC	1 cut(s)	771
FokI	GGATG	9 cut(s)	157, 332, 757, 1094, 1100, 1106, 1124, 1151, 1166
Fsp4HI	GCNGC	1 cut(s)	771
FspBI	CTAG	1 cut(s)	621
GluI	GCNGC	1 cut(s)	771
HaeIII	GGCC	1 cut(s)	905
HapII	CCGG	3 cut(s)	276, 308, 349
HgaI	GACGC	2 cut(s)	92, 869
Hin1I	GRCGYC	1 cut(s)	861
Hin1II	CATG	7 cut(s)	140, 220, 649, 728, 904, 985, 1078
HincII	GTYRAC	1 cut(s)	318
HindII	GTYRAC	1 cut(s)	318
HinfI	GANTC	3 cut(s)	11, 167, 319
HpaII	CCGG	3 cut(s)	276, 308, 349
Hpy166II	GTNNAC	2 cut(s)	318, 502
Hpy188I	TCNGA	2 cut(s)	16, 516
Hpy188III	TCNNGA	5 cut(s)	22, 184, 466, 923, 1033
Hpy8I	GTNNAC	2 cut(s)	318, 502
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	4 cut(s)	111, 874, 991, 1042
HpyCH4III	ACNGT	2 cut(s)	358, 586
HpyCH4IV	ACGT	3 cut(s)	459, 714, 934
HpyCH4V	TGCA	3 cut(s)	335, 748, 938
HpyF10VI	GCNNNNNNNGC	4 cut(s)	545, 621, 767, 881
HpyF3I	CTNAG	4 cut(s)	87, 126, 616, 891
HpySE526I	ACGT	3 cut(s)	459, 714, 934
Hsp92I	GRCGYC	1 cut(s)	861
Hsp92II	CATG	7 cut(s)	140, 220, 649, 728, 904, 985, 1078
Kzo9I	GATC	2 cut(s)	478, 919
LmnI	GCTCC	5 cut(s)	62, 687, 946, 1006, 1065
Lsp1109I	GCAGC	1 cut(s)	782
LweI	GCATC	2 cut(s)	548, 735
MaeI	CTAG	1 cut(s)	621
MaeII	ACGT	3 cut(s)	459, 714, 934
MaeIII	GTNAC	1 cut(s)	628
MalI	GATC	2 cut(s)	480, 921
MboI	GATC	2 cut(s)	478, 919
MboII	GAAGA	7 cut(s)	104, 236, 314, 794, 1142, 1169, 1178
MhlI	GDGCHC	1 cut(s)	1040
MlsI	TGGCCA	1 cut(s)	905
MluCI	AATT	4 cut(s)	383, 424, 708, 728
MluNI	TGGCCA	1 cut(s)	905
MlyI	GAGTC	1 cut(s)	313
MmeI	TCCRAC	1 cut(s)	808
Mox20I	TGGCCA	1 cut(s)	905
MroXI	GAANNNNTTC	1 cut(s)	383
MscI	TGGCCA	1 cut(s)	905
MseI	TTAA	4 cut(s)	156, 360, 806, 870
Msp20I	TGGCCA	1 cut(s)	905
MspI	CCGG	3 cut(s)	276, 308, 349
MspR9I	CCNGG	4 cut(s)	308, 350, 510, 1015
Mva1269I	GAATGC	1 cut(s)	698
MvaI	CCWGG	2 cut(s)	510, 1015
MwoI	GCNNNNNNNGC	4 cut(s)	545, 621, 767, 881
NciI	CCSGG	2 cut(s)	308, 350
NcoI	CCATGG	1 cut(s)	136
NdeII	GATC	2 cut(s)	478, 919
NheI	GCTAGC	1 cut(s)	620
NlaIII	CATG	7 cut(s)	140, 220, 649, 728, 904, 985, 1078
NlaIV	GGNNCC	2 cut(s)	75, 683
NspI	RCATGY	1 cut(s)	649
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PctI	GAATGC	1 cut(s)	698
PdmI	GAANNNNTTC	1 cut(s)	383
PfeI	GAWTC	2 cut(s)	11, 167
PfoI	TCCNGGA	1 cut(s)	348
PkrI	GCNGC	1 cut(s)	772
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
PpuMI	RGGWCCY	1 cut(s)	130
Psp1406I	AACGTT	1 cut(s)	459
Psp5II	RGGWCCY	1 cut(s)	130
Psp6I	CCWGG	2 cut(s)	508, 1013
PspGI	CCWGG	2 cut(s)	508, 1013
PspN4I	GGNNCC	2 cut(s)	75, 683
PspPI	GGNCC	2 cut(s)	130, 395
PspPPI	RGGWCCY	1 cut(s)	130
PstNI	CAGNNNCTG	1 cut(s)	542
RsaI	GTAC	2 cut(s)	365, 899
RsaNI	GTAC	2 cut(s)	364, 898
SaqAI	TTAA	4 cut(s)	156, 360, 806, 870
SatI	GCNGC	1 cut(s)	771
Sau3AI	GATC	2 cut(s)	478, 919
Sau96I	GGNCC	2 cut(s)	130, 395
SchI	GAGTC	1 cut(s)	313
ScrFI	CCNGG	4 cut(s)	308, 350, 510, 1015
SduI	GDGCHC	1 cut(s)	1040
SfaNI	GCATC	2 cut(s)	548, 735
SinI	GGWCC	2 cut(s)	130, 395
SmlI	CTYRAG	1 cut(s)	1033
SmoI	CTYRAG	1 cut(s)	1033
Sse9I	AATT	4 cut(s)	383, 424, 708, 728
SsiI	CCGC	1 cut(s)	820
SspI	AATATT	1 cut(s)	160
SspMI	CTAG	1 cut(s)	621
StyD4I	CCNGG	4 cut(s)	306, 348, 508, 1013
StyI	CCWWGG	2 cut(s)	136, 391
TaaI	ACNGT	2 cut(s)	358, 586
TaiI	ACGT	3 cut(s)	462, 717, 937
TaqI	TCGA	2 cut(s)	465, 603
TasI	AATT	4 cut(s)	383, 424, 708, 728
TatI	WGTACW	2 cut(s)	363, 897
TfiI	GAWTC	2 cut(s)	11, 167
Tru1I	TTAA	4 cut(s)	156, 360, 806, 870
Tru9I	TTAA	4 cut(s)	156, 360, 806, 870
TscAI	CASTG	2 cut(s)	780, 1045
TseI	GCWGC	1 cut(s)	770
TspDTI	ATGAA	8 cut(s)	44, 57, 236, 311, 392, 741, 1170, 1179
TspGWI	ACGGA	1 cut(s)	94
TspRI	CASTG	2 cut(s)	780, 1045
VpaK11BI	GGWCC	2 cut(s)	130, 395
XapI	RAATTY	1 cut(s)	728
XceI	RCATGY	1 cut(s)	649
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53
XmnI	GAANNNNTTC	1 cut(s)	383
XspI	CTAG	1 cut(s)	621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.