Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0008722

Physical Location & Seq

Genomic Coordinates Forward (+)

42382361 .. 42386176

Gene Structure 3816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG168800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGCTGCCATTCTGTAACTCAGTGTTATTAGCAATCAACAGTAACTATCATATTGAATTGCGTGTTGCATTGTTCGACTTGATGTTTGTTTTACTGGTTGAAATTGTTTGCATATGTATGGAAATCTTTCCCTTCATTGCTTCGTGCTGGTTGTATCCATTTGATTTTGCTCTTTTTTCACCAAACCATTTGATCTCATGTCATTCTTTTAGCTCATGCATTATATTTTATTCTTCTTTTTATGCCCCCAACCCAAAAAGTGATCATCATACTCGTCGATTTCAGGTTATCAACGTTATCGAGAAGCGAGCAGATCAGCTTGATTATGTTCTTGTGGACACTCCTGGTCAGATTGAGATATTCACTTGGTCAGCATCTGGTGCTATCATCACAGAAGCATTTGCTTCAACATTTCCTACTGTTGTGGCTTATGTAGTCGATACACCTCGCTCAGCTAGCCCAGTTACTTTTATGAGCAACATGCTTTATGCTTGTAGTATCCTCTACAAGACAAGGCTCCCCCTTGTGCTGGCATTCAACAAAATTGACGTGGCTCAACATGAATTTGCTTTGGAGTGGATGCAGGATTTTGAGGCATTTCAAGCAGCAGTGAGTGAAGACCACTCATACACTTCAACTTTAACAGAGAGCCTCTCCCTTGTATTGGATGAATTCTATAAGAACTTGCGGTCTGTTGGAGTGTCTGCTATTTCTGGTGCTGGAATGGACGCCTTCTTTAAGGCTATTGAAGCAAGTGCTGAGGAGTACATGGCCACCTATAAGGCTGATCTGGACAAGAGACGTGCAGAAAAGGAGCGTTTAGAGGAGGAACATAGGAGGGAGAACATGGAGAAGTTGAGGAAGGATATGGAGCAATCCAGGGGAGAAAATGTGGTCTTGAGCACTGGTTTGAAGGACAATGGAGAGAGGAGCAAAGCCATGATGGATGAGGATGAGGATGAGGAACTGGACGAGGATGAGGAGATAATAACTGAAGATGAGGATGTCATAGATGAGGATGAAGATGATGAAGATAGCAAGTTCCCCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005874 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP_bind_1

Protein Analysis

350

Amino Acids

40.07

Weight (kDa)

4.4

Isoelectric Point (pI)

65.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP_bind_1	PF03029	95 - 253	8.5e-47	Conserved hypothetical ATP binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21800 AT4G21800
fragaria_vesca	FvH4_4g12660 FvH4_4g12660
malus_domestica	MD12G1007400.v1.1 MD13G1150100.v1.1 MD14G1004700.v1.1 MD16G1150500.v1.1
prunus_persica	Prupe.1G114400_v2.0.a1
pyrus_communis	pycom12g00540 pycom14g00320 pycom16g12890
rosa_chinensis	RchiOBHm_Chr4g0411531
rosa_laevigata	RLG00000008348
rosa_multiflora	Rmu_sc0001868.1_g000001
rosa_roxburghii	Rroxscaffold_5G00356100
rosa_rugosa	Rorug04G0108000
rosa_samantha	Rh4AG168800 Rh4BG165400 Rh4CG180200 Rh4DG163100
rosa_wichuraiana	Rw0G020790 Rw4G014020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	688
AclI	AACGTT	1 cut(s)	294
AcoI	YGGCCR	1 cut(s)	771
AcsI	RAATTY	2 cut(s)	563, 671
AcuI	CTGAAG	1 cut(s)	1014
AcyI	GRCGYC	1 cut(s)	729
AfaI	GTAC	1 cut(s)	767
AfiI	CCNNNNNNNGG	2 cut(s)	529, 664
AgsI	TTSAA	8 cut(s)	56, 101, 408, 538, 602, 636, 749, 913
AjiI	CACGTC	2 cut(s)	550, 803
AjnI	CCWGG	2 cut(s)	343, 878
AluBI	AGCT	3 cut(s)	213, 319, 455
AluI	AGCT	3 cut(s)	213, 319, 455
Alw21I	GWGCWC	1 cut(s)	905
Alw26I	GTCTC	1 cut(s)	793
AlwNI	CAGNNNCTG	1 cut(s)	377
AoxI	GGCC	1 cut(s)	771
ApeKI	GCWGC	2 cut(s)	4, 605
ApoI	RAATTY	2 cut(s)	563, 671
ArsI	GACNNNNNNTTYG	2 cut(s)	68, 100
Asp700I	GAANNNNTTC	1 cut(s)	126
AsuHPI	GGTGA	1 cut(s)	171
AsuNHI	GCTAGC	1 cut(s)	455
BalI	TGGCCA	1 cut(s)	773
BbsI	GAAGAC	1 cut(s)	624
Bbv12I	GWGCWC	1 cut(s)	905
BbvCI	CCTCAGC	1 cut(s)	759
BbvI	GCAGC	1 cut(s)	617
BccI	CCATC	1 cut(s)	937
BciT130I	CCWGG	2 cut(s)	345, 880
BciVI	GTATCC	2 cut(s)	165, 509
BclI	TGATCA	1 cut(s)	262
BcoDI	GTCTC	1 cut(s)	793
BfaI	CTAG	1 cut(s)	456
BfuI	GTATCC	2 cut(s)	165, 509
BisI	GCNGC	2 cut(s)	5, 606
BlpI	GCTNAGC	1 cut(s)	451
BlsI	GCNGC	2 cut(s)	6, 607
Bme1390I	CCNGG	2 cut(s)	345, 880
BmgBI	CACGTC	2 cut(s)	550, 803
BmiI	GGNNCC	1 cut(s)	518
BmrFI	CCNGG	2 cut(s)	345, 880
BmrI	ACTGGG	1 cut(s)	455
BmsI	GCATC	2 cut(s)	383, 570
BmtI	GCTAGC	1 cut(s)	459
BmuI	ACTGGG	1 cut(s)	455
BpiI	GAAGAC	1 cut(s)	624
BplI	GAGNNNNNCTC	2 cut(s)	638, 670
Bpu10I	CCTNAGC	1 cut(s)	759
Bpu1102I	GCTNAGC	1 cut(s)	451
BpuEI	CTTGAG	1 cut(s)	919
BsaHI	GRCGYC	1 cut(s)	729
BsaJI	CCNNGG	1 cut(s)	879
BsaXI	ACNNNNNCTCC	2 cut(s)	876, 906
Bsc4I	CCNNNNNNNGG	2 cut(s)	529, 664
Bse1I	ACTGG	4 cut(s)	99, 461, 910, 972
Bse3DI	GCAATG	1 cut(s)	135
BseBI	CCWGG	2 cut(s)	345, 880
BseDI	CCNNGG	1 cut(s)	879
BseGI	GGATG	8 cut(s)	585, 673, 952, 958, 964, 982, 1009, 1024
BseLI	CCNNNNNNNGG	2 cut(s)	529, 664
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	3 cut(s)	33, 465, 750
BseNI	ACTGG	4 cut(s)	99, 461, 910, 972
BseRI	GAGGAG	4 cut(s)	776, 839, 943, 995
BseXI	GCAGC	1 cut(s)	617
BsgI	GTGCAG	1 cut(s)	825
BshFI	GGCC	1 cut(s)	773
BsiHKAI	GWGCWC	1 cut(s)	905
BslI	CCNNNNNNNGG	2 cut(s)	529, 664
BsmAI	GTCTC	1 cut(s)	793
BsmBI	CGTCTC	1 cut(s)	793
BsmI	GAATGC	1 cut(s)	533
BsnI	GGCC	1 cut(s)	773
Bsp1286I	GDGCHC	1 cut(s)	905
Bsp143I	GATC	4 cut(s)	192, 262, 313, 787
Bsp1720I	GCTNAGC	1 cut(s)	451
BspACI	CCGC	1 cut(s)	688
BspANI	GGCC	1 cut(s)	773
BspCNI	CTCAG	3 cut(s)	32, 464, 751
BspLI	GGNNCC	1 cut(s)	518
BspOI	GCTAGC	1 cut(s)	459
BsrDI	GCAATG	1 cut(s)	135
BsrI	ACTGG	4 cut(s)	99, 461, 910, 972
BssECI	CCNNGG	1 cut(s)	879
BssMI	GATC	4 cut(s)	192, 262, 313, 787
BssNI	GRCGYC	1 cut(s)	729
Bst2UI	CCWGG	2 cut(s)	345, 880
Bst4CI	ACNGT	2 cut(s)	41, 421
BstACI	GRCGYC	1 cut(s)	729
BstAPI	GCANNNNNTGC	1 cut(s)	380
BstC8I	GCNNGC	3 cut(s)	309, 457, 531
BstDEI	CTNAG	3 cut(s)	19, 451, 759
BstF5I	GGATG	8 cut(s)	585, 673, 952, 958, 964, 982, 1009, 1024
BstKTI	GATC	4 cut(s)	195, 265, 316, 790
BstMAI	GTCTC	1 cut(s)	793
BstMBI	GATC	4 cut(s)	192, 262, 313, 787
BstMWI	GCNNNNNNNGC	4 cut(s)	380, 456, 602, 749
BstNI	CCWGG	2 cut(s)	345, 880
BstNSI	RCATGY	1 cut(s)	484
BstSCI	CCNGG	2 cut(s)	343, 878
BstV1I	GCAGC	1 cut(s)	617
BstV2I	GAAGAC	1 cut(s)	624
BsuI	GTATCC	2 cut(s)	165, 509
BsuRI	GGCC	1 cut(s)	773
BtrI	CACGTC	2 cut(s)	550, 803
BtsCI	GGATG	8 cut(s)	585, 673, 952, 958, 964, 982, 1009, 1024
BtsI	GCAGTG	1 cut(s)	615
BtsIMutI	CAGTG	3 cut(s)	27, 615, 903
Cac8I	GCNNGC	3 cut(s)	309, 457, 531
CaiI	CAGNNNCTG	1 cut(s)	377
CseI	GACGC	1 cut(s)	737
Csp6I	GTAC	1 cut(s)	766
CviAII	CATG	7 cut(s)	198, 216, 481, 560, 769, 847, 940
CviQI	GTAC	1 cut(s)	766
DdeI	CTNAG	3 cut(s)	19, 451, 759
DpnI	GATC	4 cut(s)	194, 264, 315, 789
DpnII	GATC	4 cut(s)	192, 262, 313, 787
EaeI	YGGCCR	1 cut(s)	771
Eco57I	CTGAAG	1 cut(s)	1014
EcoRI	GAATTC	1 cut(s)	671
EcoRII	CCWGG	2 cut(s)	343, 878
EcoT22I	ATGCAT	1 cut(s)	221
Esp3I	CGTCTC	1 cut(s)	793
FaeI	CATG	7 cut(s)	201, 219, 484, 563, 772, 850, 943
FalI	AAGNNNNNCTT	1 cut(s)	1031
FatI	CATG	7 cut(s)	197, 215, 480, 559, 768, 846, 939
FauNDI	CATATG	1 cut(s)	113
FbaI	TGATCA	1 cut(s)	262
Fnu4HI	GCNGC	2 cut(s)	5, 606
FokI	GGATG	8 cut(s)	592, 680, 959, 965, 971, 989, 1016, 1031
Fsp4HI	GCNGC	2 cut(s)	5, 606
FspBI	CTAG	1 cut(s)	456
GluI	GCNGC	2 cut(s)	5, 606
HaeIII	GGCC	1 cut(s)	773
HgaI	GACGC	1 cut(s)	737
Hin1I	GRCGYC	1 cut(s)	729
Hin1II	CATG	7 cut(s)	201, 219, 484, 563, 772, 850, 943
HphI	GGTGA	1 cut(s)	171
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	1 cut(s)	351
Hpy188III	TCNNGA	3 cut(s)	301, 791, 898
Hpy8I	GTNNAC	1 cut(s)	337
Hpy99I	CGWCG	1 cut(s)	279
HpyAV	CCTTC	4 cut(s)	142, 742, 856, 907
HpyCH4III	ACNGT	2 cut(s)	41, 421
HpyCH4IV	ACGT	3 cut(s)	294, 549, 802
HpyCH4V	TGCA	5 cut(s)	68, 111, 219, 583, 806
HpyF10VI	GCNNNNNNNGC	4 cut(s)	380, 456, 602, 749
HpyF3I	CTNAG	3 cut(s)	19, 451, 759
HpySE526I	ACGT	3 cut(s)	294, 549, 802
Hsp92I	GRCGYC	1 cut(s)	729
Hsp92II	CATG	7 cut(s)	201, 219, 484, 563, 772, 850, 943
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	4 cut(s)	192, 262, 313, 787
LmnI	GCTCC	4 cut(s)	522, 814, 871, 930
Lsp1109I	GCAGC	1 cut(s)	617
LweI	GCATC	2 cut(s)	383, 570
MaeI	CTAG	1 cut(s)	456
MaeII	ACGT	3 cut(s)	294, 549, 802
MaeIII	GTNAC	3 cut(s)	14, 41, 463
MalI	GATC	4 cut(s)	194, 264, 315, 789
MboI	GATC	4 cut(s)	192, 262, 313, 787
MboII	GAAGA	5 cut(s)	225, 629, 1007, 1034, 1043
MhlI	GDGCHC	1 cut(s)	905
MlsI	TGGCCA	1 cut(s)	773
MluCI	AATT	5 cut(s)	56, 102, 543, 563, 671
MluNI	TGGCCA	1 cut(s)	773
MmeI	TCCRAC	1 cut(s)	676
Mox20I	TGGCCA	1 cut(s)	773
Mph1103I	ATGCAT	1 cut(s)	221
MroXI	GAANNNNTTC	1 cut(s)	126
MscI	TGGCCA	1 cut(s)	773
MseI	TTAA	2 cut(s)	641, 738
MslI	CAYNNNNRTG	1 cut(s)	116
Msp20I	TGGCCA	1 cut(s)	773
MspR9I	CCNGG	2 cut(s)	345, 880
Mva1269I	GAATGC	1 cut(s)	533
MvaI	CCWGG	2 cut(s)	345, 880
MwoI	GCNNNNNNNGC	4 cut(s)	380, 456, 602, 749
NdeI	CATATG	1 cut(s)	113
NdeII	GATC	4 cut(s)	192, 262, 313, 787
NheI	GCTAGC	1 cut(s)	455
NlaIII	CATG	7 cut(s)	201, 219, 484, 563, 772, 850, 943
NlaIV	GGNNCC	1 cut(s)	518
NsiI	ATGCAT	1 cut(s)	221
NspI	RCATGY	1 cut(s)	484
PctI	GAATGC	1 cut(s)	533
PdmI	GAANNNNTTC	1 cut(s)	126
PkrI	GCNGC	2 cut(s)	6, 607
Psp1406I	AACGTT	1 cut(s)	294
Psp6I	CCWGG	2 cut(s)	343, 878
PspGI	CCWGG	2 cut(s)	343, 878
PspN4I	GGNNCC	1 cut(s)	518
PstNI	CAGNNNCTG	1 cut(s)	377
RsaI	GTAC	1 cut(s)	767
RsaNI	GTAC	1 cut(s)	766
RseI	CAYNNNNRTG	1 cut(s)	116
SaqAI	TTAA	2 cut(s)	641, 738
SatI	GCNGC	2 cut(s)	5, 606
Sau3AI	GATC	4 cut(s)	192, 262, 313, 787
ScrFI	CCNGG	2 cut(s)	345, 880
SduI	GDGCHC	1 cut(s)	905
SetI	ASST	9 cut(s)	215, 288, 297, 321, 448, 457, 552, 779, 805
SfaNI	GCATC	2 cut(s)	383, 570
SmiMI	CAYNNNNRTG	1 cut(s)	116
SmlI	CTYRAG	1 cut(s)	898
SmoI	CTYRAG	1 cut(s)	898
Sse9I	AATT	5 cut(s)	56, 102, 543, 563, 671
SsiI	CCGC	1 cut(s)	688
SspMI	CTAG	1 cut(s)	456
StyD4I	CCNGG	2 cut(s)	343, 878
TaaI	ACNGT	2 cut(s)	41, 421
TaiI	ACGT	3 cut(s)	297, 552, 805
TaqI	TCGA	4 cut(s)	75, 277, 300, 438
TasI	AATT	5 cut(s)	56, 102, 543, 563, 671
TatI	WGTACW	1 cut(s)	765
Tru1I	TTAA	2 cut(s)	641, 738
Tru9I	TTAA	2 cut(s)	641, 738
TscAI	CASTG	3 cut(s)	27, 615, 910
TseI	GCWGC	2 cut(s)	4, 605
TspDTI	ATGAA	5 cut(s)	124, 576, 684, 1035, 1044
TspRI	CASTG	3 cut(s)	27, 615, 910
XapI	RAATTY	2 cut(s)	563, 671
XceI	RCATGY	1 cut(s)	484
XmnI	GAANNNNTTC	1 cut(s)	126
XspI	CTAG	1 cut(s)	456
Zsp2I	ATGCAT	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.