Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008722

Physical Location & Seq

Genomic Coordinates Reverse (-)

16835736 .. 16839349

Gene Structure 3614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0108000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGTCTGTGGCCTCATCCCAACAGAGCTTTCTTGCAAACGCTCTCATTCCACAAACCCACAAACCTAAAACCAAGTTCTTCACTTCACCAAACACCATCTCATGCAAAAGAAGCTCCTCATCAGATGATGATGATCAGAAAGGTCTTTCCAGTAATGAAATTCCCAGAAAGAATGAGAACCAATTTGCAAAGTTGGCAATGGTGACATTGGCAGCTGGTGTGTTGACTCTGGGCTCTGTTCATGATGCTTCAGCTGCCAAGAGTGGTGGCAGAGTAGGTGGACAGGCGTTCCGGTCTTCGGCTCCTCGGCCTTCCTCCCCTAGGATCAATAACAATTCCAGGACCAATATTTACATCAATCCTCCTATTGCTCCGCCATTAGTCGGTGGTTATGGATATGGTTATGGATCACCATTCTTTGGTGGGTGGGGTTGGTCTCCATTTTCATTTTTCGCCCCAGGTCCTGGTGTTGCCGTTGGCATTGGTGGCGGCTTCCAACTGTTAGCTATTGCTGTGTTTCTTGGTGCAATTGCTGCCGTGGCAAGGAGATTCAACGCTTCAAGAGACGAAGAAGATGATGATTACTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005874 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP_bind_1

Protein Analysis

196

Amino Acids

20.65

Weight (kDa)

9.48

Isoelectric Point (pI)

56.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21800 AT4G21800
fragaria_vesca	FvH4_4g12660 FvH4_4g12660
malus_domestica	MD12G1007400.v1.1 MD13G1150100.v1.1 MD14G1004700.v1.1 MD16G1150500.v1.1
prunus_persica	Prupe.1G114400_v2.0.a1
pyrus_communis	pycom12g00540 pycom14g00320 pycom16g12890
rosa_chinensis	RchiOBHm_Chr4g0411531
rosa_laevigata	RLG00000008348
rosa_multiflora	Rmu_sc0001868.1_g000001
rosa_roxburghii	Rroxscaffold_5G00356100
rosa_rugosa	Rorug04G0108000
rosa_samantha	Rh4AG168800 Rh4BG165400 Rh4CG180200 Rh4DG163100
rosa_wichuraiana	Rw0G020790 Rw4G014020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	419, 464
AciI	CCGC	2 cut(s)	374, 489
AclWI	GGATC	2 cut(s)	332, 415
AcsI	RAATTY	1 cut(s)	159
AcuI	CTGAAG	1 cut(s)	234
AfiI	CCNNNNNNNGG	6 cut(s)	298, 321, 383, 419, 464, 543
AgsI	TTSAA	2 cut(s)	553, 561
AjnI	CCWGG	3 cut(s)	338, 457, 463
AjuI	GAANNNNNNNTTGG	2 cut(s)	12, 44
AluBI	AGCT	5 cut(s)	27, 114, 215, 254, 506
AluI	AGCT	5 cut(s)	27, 114, 215, 254, 506
Alw26I	GTCTC	2 cut(s)	441, 558
AlwI	GGATC	2 cut(s)	332, 415
AlwNI	CAGNNNCTG	1 cut(s)	464
AoxI	GGCC	2 cut(s)	9, 308
ApeKI	GCWGC	3 cut(s)	212, 254, 533
ApoI	RAATTY	1 cut(s)	159
AspA2I	CCTAGG	1 cut(s)	320
AspS9I	GGNCC	2 cut(s)	342, 461
AsuHPI	GGTGA	3 cut(s)	78, 214, 402
AvaII	GGWCC	2 cut(s)	342, 461
AvrII	CCTAGG	1 cut(s)	320
BanII	GRGCYC	1 cut(s)	236
BbsI	GAAGAC	1 cut(s)	288
BbvI	GCAGC	3 cut(s)	224, 241, 520
BccI	CCATC	1 cut(s)	104
BceAI	ACGGC	2 cut(s)	458, 521
BciT130I	CCWGG	3 cut(s)	340, 459, 465
BclI	TGATCA	1 cut(s)	133
BcoDI	GTCTC	2 cut(s)	441, 558
BfaI	CTAG	1 cut(s)	321
BisI	GCNGC	4 cut(s)	213, 255, 490, 534
BlnI	CCTAGG	1 cut(s)	320
BlsI	GCNGC	4 cut(s)	214, 256, 491, 535
Bme1390I	CCNGG	3 cut(s)	340, 459, 465
Bme18I	GGWCC	2 cut(s)	342, 461
BmgT120I	GGNCC	2 cut(s)	342, 461
BmiI	GGNNCC	1 cut(s)	303
BmrFI	CCNGG	3 cut(s)	340, 459, 465
BmsI	GCATC	1 cut(s)	235
BpiI	GAAGAC	1 cut(s)	288
BsaBI	GATNNNNATC	1 cut(s)	132
BsaI	GGTCTC	1 cut(s)	441
BsaJI	CCNNGG	4 cut(s)	305, 320, 457, 537
BsaWI	WCCGGW	1 cut(s)	291
Bsc4I	CCNNNNNNNGG	6 cut(s)	298, 321, 383, 419, 464, 543
Bse1I	ACTGG	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	204
Bse8I	GATNNNNATC	1 cut(s)	132
BseBI	CCWGG	3 cut(s)	340, 459, 465
BseDI	CCNNGG	4 cut(s)	305, 320, 457, 537
BseGI	GGATG	1 cut(s)	14
BseJI	GATNNNNATC	1 cut(s)	132
BseLI	CCNNNNNNNGG	6 cut(s)	298, 321, 383, 419, 464, 543
BseMI	GCAATG	1 cut(s)	204
BseNI	ACTGG	1 cut(s)	150
BseRI	GAGGAG	2 cut(s)	106, 294
BseXI	GCAGC	3 cut(s)	224, 241, 520
BshFI	GGCC	2 cut(s)	11, 310
BsiSI	CCGG	1 cut(s)	292
BslI	CCNNNNNNNGG	6 cut(s)	298, 321, 383, 419, 464, 543
BsmAI	GTCTC	2 cut(s)	441, 558
BsmBI	CGTCTC	1 cut(s)	558
BsnI	GGCC	2 cut(s)	11, 310
Bso31I	GGTCTC	1 cut(s)	441
Bsp1286I	GDGCHC	1 cut(s)	236
Bsp143I	GATC	3 cut(s)	133, 324, 407
BspACI	CCGC	2 cut(s)	374, 489
BspANI	GGCC	2 cut(s)	11, 310
BspHI	TCATGA	1 cut(s)	241
BspLI	GGNNCC	1 cut(s)	303
BspPI	GGATC	2 cut(s)	332, 415
BspTNI	GGTCTC	1 cut(s)	441
BsrDI	GCAATG	1 cut(s)	204
BsrI	ACTGG	1 cut(s)	150
BssECI	CCNNGG	4 cut(s)	305, 320, 457, 537
BssMI	GATC	3 cut(s)	133, 324, 407
BssT1I	CCWWGG	1 cut(s)	320
Bst2UI	CCWGG	3 cut(s)	340, 459, 465
Bst4CI	ACNGT	1 cut(s)	501
BstAPI	GCANNNNNTGC	1 cut(s)	533
BstDSI	CCRYGG	1 cut(s)	537
BstENI	CCTNNNNNAGG	1 cut(s)	319
BstF5I	GGATG	1 cut(s)	14
BstKTI	GATC	3 cut(s)	136, 327, 410
BstMAI	GTCTC	2 cut(s)	441, 558
BstMBI	GATC	3 cut(s)	133, 324, 407
BstMWI	GCNNNNNNNGC	6 cut(s)	111, 194, 254, 486, 533, 539
BstNI	CCWGG	3 cut(s)	340, 459, 465
BstSCI	CCNGG	3 cut(s)	338, 457, 463
BstV1I	GCAGC	3 cut(s)	224, 241, 520
BstV2I	GAAGAC	1 cut(s)	288
BsuRI	GGCC	2 cut(s)	11, 310
BtgI	CCRYGG	1 cut(s)	537
BtsCI	GGATG	1 cut(s)	14
CaiI	CAGNNNCTG	1 cut(s)	464
CciI	TCATGA	1 cut(s)	241
Cfr13I	GGNCC	2 cut(s)	342, 461
CspCI	CAANNNNNGTGG	2 cut(s)	247, 282
CviAII	CATG	2 cut(s)	102, 242
DpnI	GATC	3 cut(s)	135, 326, 409
DpnII	GATC	3 cut(s)	133, 324, 407
EciI	GGCGGA	1 cut(s)	363
Eco130I	CCWWGG	1 cut(s)	320
Eco24I	GRGCYC	1 cut(s)	236
Eco31I	GGTCTC	1 cut(s)	441
Eco47I	GGWCC	2 cut(s)	342, 461
Eco57I	CTGAAG	1 cut(s)	234
EcoNI	CCTNNNNNAGG	1 cut(s)	319
EcoO109I	RGGNCCY	1 cut(s)	461
EcoRII	CCWGG	3 cut(s)	338, 457, 463
EcoT14I	CCWWGG	1 cut(s)	320
EcoT38I	GRGCYC	1 cut(s)	236
ErhI	CCWWGG	1 cut(s)	320
Esp3I	CGTCTC	1 cut(s)	558
FaeI	CATG	2 cut(s)	105, 245
FaiI	YATR	5 cut(s)	103, 243, 393, 399, 405
FatI	CATG	2 cut(s)	101, 241
FbaI	TGATCA	1 cut(s)	133
Fnu4HI	GCNGC	4 cut(s)	213, 255, 490, 534
FriOI	GRGCYC	1 cut(s)	236
Fsp4HI	GCNGC	4 cut(s)	213, 255, 490, 534
FspBI	CTAG	1 cut(s)	321
GluI	GCNGC	4 cut(s)	213, 255, 490, 534
HaeIII	GGCC	2 cut(s)	11, 310
HapII	CCGG	1 cut(s)	292
Hin1II	CATG	2 cut(s)	105, 245
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HinfI	GANTC	2 cut(s)	226, 549
HpaII	CCGG	1 cut(s)	292
HphI	GGTGA	3 cut(s)	78, 214, 402
Hpy166II	GTNNAC	2 cut(s)	225, 281
Hpy188I	TCNGA	2 cut(s)	124, 138
Hpy188III	TCNNGA	2 cut(s)	242, 561
Hpy8I	GTNNAC	2 cut(s)	225, 281
HpyAV	CCTTC	1 cut(s)	321
HpyCH4III	ACNGT	1 cut(s)	501
HpyCH4V	TGCA	4 cut(s)	35, 105, 188, 527
HpyF10VI	GCNNNNNNNGC	6 cut(s)	111, 194, 254, 486, 533, 539
Hsp92II	CATG	2 cut(s)	105, 245
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	3 cut(s)	133, 324, 407
LmnI	GCTCC	3 cut(s)	119, 307, 376
Lsp1109I	GCAGC	3 cut(s)	224, 241, 520
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	1 cut(s)	321
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	3 cut(s)	135, 326, 409
MboI	GATC	3 cut(s)	133, 324, 407
MboII	GAAGA	4 cut(s)	70, 288, 581, 584
MfeI	CAATTG	1 cut(s)	528
MhlI	GDGCHC	1 cut(s)	236
MluCI	AATT	4 cut(s)	159, 182, 334, 528
MlyI	GAGTC	1 cut(s)	220
MmeI	TCCRAC	1 cut(s)	520
MnlI	CCTC	5 cut(s)	22, 127, 315, 325, 372
MseI	TTAA	1 cut(s)	589
MspA1I	CMGCKG	2 cut(s)	215, 254
MspI	CCGG	1 cut(s)	292
MspR9I	CCNGG	3 cut(s)	340, 459, 465
MunI	CAATTG	1 cut(s)	528
MvaI	CCWGG	3 cut(s)	340, 459, 465
MwoI	GCNNNNNNNGC	6 cut(s)	111, 194, 254, 486, 533, 539
NdeII	GATC	3 cut(s)	133, 324, 407
NlaIII	CATG	2 cut(s)	105, 245
NlaIV	GGNNCC	1 cut(s)	303
NmeAIII	GCCGAG	1 cut(s)	286
NmuCI	GTSAC	1 cut(s)	202
PagI	TCATGA	1 cut(s)	241
PfeI	GAWTC	1 cut(s)	549
PflMI	CCANNNNNTGG	2 cut(s)	419, 464
PfoI	TCCNGGA	1 cut(s)	338
PkrI	GCNGC	4 cut(s)	214, 256, 491, 535
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
PpuMI	RGGWCCY	1 cut(s)	461
Psp5II	RGGWCCY	1 cut(s)	461
Psp6I	CCWGG	3 cut(s)	338, 457, 463
PspGI	CCWGG	3 cut(s)	338, 457, 463
PspN4I	GGNNCC	1 cut(s)	303
PspPI	GGNCC	2 cut(s)	342, 461
PspPPI	RGGWCCY	1 cut(s)	461
PstNI	CAGNNNCTG	1 cut(s)	464
PvuII	CAGCTG	2 cut(s)	215, 254
SaqAI	TTAA	1 cut(s)	589
SatI	GCNGC	4 cut(s)	213, 255, 490, 534
Sau3AI	GATC	3 cut(s)	133, 324, 407
Sau96I	GGNCC	2 cut(s)	342, 461
SchI	GAGTC	1 cut(s)	220
ScrFI	CCNGG	3 cut(s)	340, 459, 465
SduI	GDGCHC	1 cut(s)	236
SetI	ASST	9 cut(s)	29, 67, 116, 145, 217, 256, 280, 463, 508
SfaNI	GCATC	1 cut(s)	235
SinI	GGWCC	2 cut(s)	342, 461
Sse9I	AATT	4 cut(s)	159, 182, 334, 528
SsiI	CCGC	2 cut(s)	374, 489
SspI	AATATT	1 cut(s)	349
SspMI	CTAG	1 cut(s)	321
StyD4I	CCNGG	3 cut(s)	338, 457, 463
StyI	CCWWGG	1 cut(s)	320
TaaI	ACNGT	1 cut(s)	501
TasI	AATT	4 cut(s)	159, 182, 334, 528
TauI	GCSGC	1 cut(s)	492
TfiI	GAWTC	1 cut(s)	549
Tru1I	TTAA	1 cut(s)	589
Tru9I	TTAA	1 cut(s)	589
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	3 cut(s)	212, 254, 533
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	3 cut(s)	171, 230, 435
Van91I	CCANNNNNTGG	2 cut(s)	419, 464
VpaK11BI	GGWCC	2 cut(s)	342, 461
XagI	CCTNNNNNAGG	1 cut(s)	319
XapI	RAATTY	1 cut(s)	159
XmaJI	CCTAGG	1 cut(s)	320
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.