Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0008722

Physical Location & Seq

Genomic Coordinates Forward (+)

32395329 .. 32399133

Gene Structure 3805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG163100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGAGAAACTTAATATTGAGGAATCATCCACCAGCTTCAAGAAAAAACCTGTTATTATTATTGTTGTAGGCATGGCAGGGAGTGGTAAAACAACCTTTCTTCATCGTTTGGTTGCCCACACTCATCAATCCGGTATTCGTGGCTATGTGATGAACCTTGACCCGGCTGTGTTGACTCTTCCATTCGGTGCAAACATTGACATCCGGGATACTGTTAAGTACAAGGAAGTTATGAAACAATTCAACCTTGGACCTAATGGTGGCATTTTGACCTCGCTTAATTTGTTTGCGACCAAGTTTGATGAGGTTATCAACGTTATCGAGAAGCGAGCAGATCAGCTTGATTTTGTTCTTGTGGACACTCCTGGTCAGATTGAGATATTCACTTGGTCAGCATCTGGTGCTATCATCACAGAAGCATTTGCTTCAACATTTCCTACTGTTGTGACTTATGTAGTCGATACACCTCGCTCAGCTAGCCCAGTTACTTTTATGAGCAACATGCTTTATGCTTGTAGTATCCTCTACAAGACAAGGCTCCCCCTTGTGCTGGCATTCAACAAAATTGACGTGGCTCAACATGAATTTGCTTTGGAGTGGATGCAGGATTTTGAGGCATTTCAAGCAGCAGTGAGTGAAGACCACTCATACACTTCAACTTTAACAGAGAGCCTCTCCCTTGTGTTGGATGAATTCTATAAGAACTTGCGGTCTGTTGGAGTGTCTGCTATTTCTGGTGCTGGAATGGACGCCTTCTTTAAGGCTATTGAAGCAAGTGCTGAGGAGTACATGGCCACCTATAAGGCTGATCTGGACAAGAGACGTGCAGAAAAGGAGCGTTTAGAGGAGGAACATAGGAGGGAGAACATGGAGAAGTTGAGGAAGGATATGGAGCAATCCAGGGGAGAAAATGTGGTCTTGAGCACTGGTTTGAAGGACAATGGAGAGAGGAGCAAAGCCATGATGGATGAGGATGAGGATGAGGAACTGGACGAGGATGAGGAGATAATAACTGAAGATGAGGATGTCATAGATGAGGATGAAGATGATGAAGATAGCAAGTTCCCCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005874 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP_bind_1

Protein Analysis

357

Amino Acids

40.23

Weight (kDa)

4.52

Isoelectric Point (pI)

51.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	18 - 258	7.2e-07	Elongation factor Tu GTP binding domain
ATP_bind_1	PF03029	22 - 260	1.2e-81	Conserved hypothetical ATP binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21800 AT4G21800
fragaria_vesca	FvH4_4g12660 FvH4_4g12660
malus_domestica	MD12G1007400.v1.1 MD13G1150100.v1.1 MD14G1004700.v1.1 MD16G1150500.v1.1
prunus_persica	Prupe.1G114400_v2.0.a1
pyrus_communis	pycom12g00540 pycom14g00320 pycom16g12890
rosa_chinensis	RchiOBHm_Chr4g0411531
rosa_laevigata	RLG00000008348
rosa_multiflora	Rmu_sc0001868.1_g000001
rosa_roxburghii	Rroxscaffold_5G00356100
rosa_rugosa	Rorug04G0108000
rosa_samantha	Rh4AG168800 Rh4BG165400 Rh4CG180200 Rh4DG163100
rosa_wichuraiana	Rw0G020790 Rw4G014020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	709
AclI	AACGTT	1 cut(s)	315
AcoI	YGGCCR	1 cut(s)	792
AcsI	RAATTY	2 cut(s)	584, 692
AcuI	CTGAAG	1 cut(s)	1035
AcyI	GRCGYC	1 cut(s)	750
AfaI	GTAC	2 cut(s)	221, 788
AfiI	CCNNNNNNNGG	4 cut(s)	163, 260, 550, 685
AgsI	TTSAA	8 cut(s)	40, 244, 429, 559, 623, 657, 770, 934
AjiI	CACGTC	2 cut(s)	571, 824
AjnI	CCWGG	2 cut(s)	364, 899
AluBI	AGCT	3 cut(s)	36, 340, 476
AluI	AGCT	3 cut(s)	36, 340, 476
Alw21I	GWGCWC	1 cut(s)	926
Alw26I	GTCTC	1 cut(s)	814
AlwNI	CAGNNNCTG	1 cut(s)	398
AoxI	GGCC	1 cut(s)	792
ApeKI	GCWGC	1 cut(s)	626
ApoI	RAATTY	2 cut(s)	584, 692
Asp700I	GAANNNNTTC	1 cut(s)	239
AspS9I	GGNCC	1 cut(s)	251
AsuC2I	CCSGG	2 cut(s)	164, 206
AsuNHI	GCTAGC	1 cut(s)	476
AvaII	GGWCC	1 cut(s)	251
BalI	TGGCCA	1 cut(s)	794
BbsI	GAAGAC	1 cut(s)	645
Bbv12I	GWGCWC	1 cut(s)	926
BbvCI	CCTCAGC	1 cut(s)	780
BbvI	GCAGC	1 cut(s)	638
BccI	CCATC	1 cut(s)	958
BciT130I	CCWGG	2 cut(s)	366, 901
BciVI	GTATCC	2 cut(s)	202, 530
BcnI	CCSGG	2 cut(s)	164, 206
BcoDI	GTCTC	1 cut(s)	814
BfaI	CTAG	1 cut(s)	477
BfuI	GTATCC	2 cut(s)	202, 530
BisI	GCNGC	1 cut(s)	627
BlpI	GCTNAGC	1 cut(s)	472
BlsI	GCNGC	1 cut(s)	628
Bme1390I	CCNGG	4 cut(s)	164, 206, 366, 901
Bme18I	GGWCC	1 cut(s)	251
BmgBI	CACGTC	2 cut(s)	571, 824
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	1 cut(s)	539
BmrFI	CCNGG	4 cut(s)	164, 206, 366, 901
BmrI	ACTGGG	1 cut(s)	476
BmsI	GCATC	2 cut(s)	404, 591
BmtI	GCTAGC	1 cut(s)	480
BmuI	ACTGGG	1 cut(s)	476
BpiI	GAAGAC	1 cut(s)	645
BplI	GAGNNNNNCTC	2 cut(s)	659, 691
Bpu10I	CCTNAGC	1 cut(s)	780
Bpu1102I	GCTNAGC	1 cut(s)	472
BpuEI	CTTGAG	1 cut(s)	940
BpuMI	CCSGG	2 cut(s)	164, 206
BsaHI	GRCGYC	1 cut(s)	750
BsaJI	CCNNGG	2 cut(s)	247, 900
BsaWI	WCCGGW	1 cut(s)	131
BsaXI	ACNNNNNCTCC	2 cut(s)	897, 927
Bsc4I	CCNNNNNNNGG	4 cut(s)	163, 260, 550, 685
Bse1I	ACTGG	3 cut(s)	482, 931, 993
BseBI	CCWGG	2 cut(s)	366, 901
BseDI	CCNNGG	2 cut(s)	247, 900
BseLI	CCNNNNNNNGG	4 cut(s)	163, 260, 550, 685
BseMII	CTCAG	2 cut(s)	486, 771
BseNI	ACTGG	3 cut(s)	482, 931, 993
BseRI	GAGGAG	4 cut(s)	797, 860, 964, 1016
BseXI	GCAGC	1 cut(s)	638
BsgI	GTGCAG	1 cut(s)	846
BshFI	GGCC	1 cut(s)	794
BsiHKAI	GWGCWC	1 cut(s)	926
BsiSI	CCGG	3 cut(s)	132, 164, 205
BslI	CCNNNNNNNGG	4 cut(s)	163, 260, 550, 685
BsmAI	GTCTC	1 cut(s)	814
BsmBI	CGTCTC	1 cut(s)	814
BsmI	GAATGC	1 cut(s)	554
BsnI	GGCC	1 cut(s)	794
Bsp1286I	GDGCHC	1 cut(s)	926
Bsp143I	GATC	2 cut(s)	334, 808
Bsp1720I	GCTNAGC	1 cut(s)	472
BspACI	CCGC	1 cut(s)	709
BspANI	GGCC	1 cut(s)	794
BspCNI	CTCAG	2 cut(s)	485, 772
BspLI	GGNNCC	1 cut(s)	539
BspOI	GCTAGC	1 cut(s)	480
BsrI	ACTGG	3 cut(s)	482, 931, 993
BssECI	CCNNGG	2 cut(s)	247, 900
BssMI	GATC	2 cut(s)	334, 808
BssNI	GRCGYC	1 cut(s)	750
BssT1I	CCWWGG	1 cut(s)	247
Bst2UI	CCWGG	2 cut(s)	366, 901
Bst4CI	ACNGT	2 cut(s)	214, 442
Bst6I	CTCTTC	1 cut(s)	183
BstACI	GRCGYC	1 cut(s)	750
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstC8I	GCNNGC	3 cut(s)	330, 478, 552
BstDEI	CTNAG	2 cut(s)	472, 780
BstKTI	GATC	2 cut(s)	337, 811
BstMAI	GTCTC	1 cut(s)	814
BstMBI	GATC	2 cut(s)	334, 808
BstMWI	GCNNNNNNNGC	4 cut(s)	401, 477, 623, 770
BstNI	CCWGG	2 cut(s)	366, 901
BstNSI	RCATGY	1 cut(s)	505
BstSCI	CCNGG	4 cut(s)	162, 204, 364, 899
BstV1I	GCAGC	1 cut(s)	638
BstV2I	GAAGAC	1 cut(s)	645
BsuI	GTATCC	2 cut(s)	202, 530
BsuRI	GGCC	1 cut(s)	794
BtrI	CACGTC	2 cut(s)	571, 824
BtsI	GCAGTG	1 cut(s)	636
BtsIMutI	CAGTG	2 cut(s)	636, 924
Cac8I	GCNNGC	3 cut(s)	330, 478, 552
CaiI	CAGNNNCTG	1 cut(s)	398
Cfr13I	GGNCC	1 cut(s)	251
CseI	GACGC	1 cut(s)	758
Csp6I	GTAC	2 cut(s)	220, 787
CviAII	CATG	6 cut(s)	73, 502, 581, 790, 868, 961
CviQI	GTAC	2 cut(s)	220, 787
DdeI	CTNAG	2 cut(s)	472, 780
DpnI	GATC	2 cut(s)	336, 810
DpnII	GATC	2 cut(s)	334, 808
EaeI	YGGCCR	1 cut(s)	792
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	247
Eco47I	GGWCC	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	1035
EcoRI	GAATTC	1 cut(s)	692
EcoRII	CCWGG	2 cut(s)	364, 899
EcoT14I	CCWWGG	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	247
Esp3I	CGTCTC	1 cut(s)	814
FaeI	CATG	6 cut(s)	76, 505, 584, 793, 871, 964
FalI	AAGNNNNNCTT	1 cut(s)	1052
FatI	CATG	6 cut(s)	72, 501, 580, 789, 867, 960
Fnu4HI	GCNGC	1 cut(s)	627
Fsp4HI	GCNGC	1 cut(s)	627
FspBI	CTAG	1 cut(s)	477
GluI	GCNGC	1 cut(s)	627
HaeIII	GGCC	1 cut(s)	794
HapII	CCGG	3 cut(s)	132, 164, 205
HgaI	GACGC	1 cut(s)	758
Hin1I	GRCGYC	1 cut(s)	750
Hin1II	CATG	6 cut(s)	76, 505, 584, 793, 871, 964
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HinfI	GANTC	2 cut(s)	23, 175
HpaII	CCGG	3 cut(s)	132, 164, 205
Hpy166II	GTNNAC	2 cut(s)	174, 358
Hpy188I	TCNGA	1 cut(s)	372
Hpy188III	TCNNGA	4 cut(s)	40, 322, 812, 919
Hpy8I	GTNNAC	2 cut(s)	174, 358
HpyAV	CCTTC	3 cut(s)	763, 877, 928
HpyCH4III	ACNGT	2 cut(s)	214, 442
HpyCH4IV	ACGT	3 cut(s)	315, 570, 823
HpyCH4V	TGCA	3 cut(s)	191, 604, 827
HpyF10VI	GCNNNNNNNGC	4 cut(s)	401, 477, 623, 770
HpyF3I	CTNAG	2 cut(s)	472, 780
HpySE526I	ACGT	3 cut(s)	315, 570, 823
Hsp92I	GRCGYC	1 cut(s)	750
Hsp92II	CATG	6 cut(s)	76, 505, 584, 793, 871, 964
Kzo9I	GATC	2 cut(s)	334, 808
LmnI	GCTCC	4 cut(s)	543, 835, 892, 951
Lsp1109I	GCAGC	1 cut(s)	638
LweI	GCATC	2 cut(s)	404, 591
MaeI	CTAG	1 cut(s)	477
MaeII	ACGT	3 cut(s)	315, 570, 823
MaeIII	GTNAC	2 cut(s)	445, 484
MalI	GATC	2 cut(s)	336, 810
MboI	GATC	2 cut(s)	334, 808
MboII	GAAGA	6 cut(s)	92, 170, 650, 1028, 1055, 1064
MhlI	GDGCHC	1 cut(s)	926
MlsI	TGGCCA	1 cut(s)	794
MluCI	AATT	5 cut(s)	239, 280, 564, 584, 692
MluNI	TGGCCA	1 cut(s)	794
MlyI	GAGTC	1 cut(s)	169
MmeI	TCCRAC	2 cut(s)	666, 697
Mox20I	TGGCCA	1 cut(s)	794
MroXI	GAANNNNTTC	1 cut(s)	239
MscI	TGGCCA	1 cut(s)	794
MseI	TTAA	5 cut(s)	12, 216, 279, 662, 759
Msp20I	TGGCCA	1 cut(s)	794
MspI	CCGG	3 cut(s)	132, 164, 205
MspR9I	CCNGG	4 cut(s)	164, 206, 366, 901
Mva1269I	GAATGC	1 cut(s)	554
MvaI	CCWGG	2 cut(s)	366, 901
MwoI	GCNNNNNNNGC	4 cut(s)	401, 477, 623, 770
NciI	CCSGG	2 cut(s)	164, 206
NdeII	GATC	2 cut(s)	334, 808
NheI	GCTAGC	1 cut(s)	476
NlaIII	CATG	6 cut(s)	76, 505, 584, 793, 871, 964
NlaIV	GGNNCC	1 cut(s)	539
NmuCI	GTSAC	1 cut(s)	445
NspI	RCATGY	1 cut(s)	505
PctI	GAATGC	1 cut(s)	554
PdmI	GAANNNNTTC	1 cut(s)	239
PfeI	GAWTC	1 cut(s)	23
PfoI	TCCNGGA	1 cut(s)	204
PkrI	GCNGC	1 cut(s)	628
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
Psp1406I	AACGTT	1 cut(s)	315
Psp6I	CCWGG	2 cut(s)	364, 899
PspGI	CCWGG	2 cut(s)	364, 899
PspN4I	GGNNCC	1 cut(s)	539
PspPI	GGNCC	1 cut(s)	251
PstNI	CAGNNNCTG	1 cut(s)	398
RsaI	GTAC	2 cut(s)	221, 788
RsaNI	GTAC	2 cut(s)	220, 787
SaqAI	TTAA	5 cut(s)	12, 216, 279, 662, 759
SatI	GCNGC	1 cut(s)	627
Sau3AI	GATC	2 cut(s)	334, 808
Sau96I	GGNCC	1 cut(s)	251
SchI	GAGTC	1 cut(s)	169
ScrFI	CCNGG	4 cut(s)	164, 206, 366, 901
SduI	GDGCHC	1 cut(s)	926
SfaNI	GCATC	2 cut(s)	404, 591
SinI	GGWCC	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	919
SmoI	CTYRAG	1 cut(s)	919
Sse9I	AATT	5 cut(s)	239, 280, 564, 584, 692
SsiI	CCGC	1 cut(s)	709
SspI	AATATT	1 cut(s)	16
SspMI	CTAG	1 cut(s)	477
StyD4I	CCNGG	4 cut(s)	162, 204, 364, 899
StyI	CCWWGG	1 cut(s)	247
TaaI	ACNGT	2 cut(s)	214, 442
TaiI	ACGT	3 cut(s)	318, 573, 826
TaqI	TCGA	2 cut(s)	321, 459
TasI	AATT	5 cut(s)	239, 280, 564, 584, 692
TatI	WGTACW	2 cut(s)	219, 786
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	5 cut(s)	12, 216, 279, 662, 759
Tru9I	TTAA	5 cut(s)	12, 216, 279, 662, 759
TscAI	CASTG	2 cut(s)	636, 931
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	1 cut(s)	626
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	7 cut(s)	92, 167, 248, 597, 705, 1056, 1065
TspRI	CASTG	2 cut(s)	636, 931
VpaK11BI	GGWCC	1 cut(s)	251
XapI	RAATTY	2 cut(s)	584, 692
XceI	RCATGY	1 cut(s)	505
XmnI	GAANNNNTTC	1 cut(s)	239
XspI	CTAG	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.